BGSU RNA Site //

Equivalence class NR_4.0_12111.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
16D8A|1|C (rep)RNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3')Rhodobacter sphaeroidesBacteriaRsAgo Ternary Complex with guide RNA and Target DNA Containing A-A Bulge Within the Seed Segment of the Target StrandX-ray diffraction2.252018-07-25
26D92|1|CRNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3')Rhodobacter sphaeroidesBacteriaTernary RsAgo Complex with Guide RNA and Target DNA Containing A-A non-canonical pair at position 3X-ray diffraction1.812018-07-25
36D92|1|HRNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3')Rhodobacter sphaeroidesBacteriaTernary RsAgo Complex with Guide RNA and Target DNA Containing A-A non-canonical pair at position 3X-ray diffraction1.812018-07-25
46D8P|1|ERNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3')Rhodobacter sphaeroidesBacteriaTernary RsAgo Complex Containing Guide RNA Paired with Target DNAX-ray diffraction2.12018-07-25
56D8P|1|CRNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3')Rhodobacter sphaeroidesBacteriaTernary RsAgo Complex Containing Guide RNA Paired with Target DNAX-ray diffraction2.12018-07-25
66D8A|1|HRNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3')Rhodobacter sphaeroidesBacteriaRsAgo Ternary Complex with guide RNA and Target DNA Containing A-A Bulge Within the Seed Segment of the Target StrandX-ray diffraction2.252018-07-25
76D9K|1|HRNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3')Rhodobacter sphaeroidesBacteriaTernary RsAgo Complex with Guide RNA and Target DNA Containing A-G Non-canonical PairX-ray diffraction22018-07-25
86D9K|1|CRNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3')Rhodobacter sphaeroidesBacteriaTernary RsAgo Complex with Guide RNA and Target DNA Containing A-G Non-canonical PairX-ray diffraction22018-07-25
96D8F|1|CRNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3')Rhodobacter sphaeroidesBacteriaRsAgo Ternary Complex with Guide RNA and Target DNA Containing T-T Bulge Within the Seed SegmentX-ray diffraction2.152018-07-25
106D8F|1|HRNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3')Rhodobacter sphaeroidesBacteriaRsAgo Ternary Complex with Guide RNA and Target DNA Containing T-T Bulge Within the Seed SegmentX-ray diffraction2.152018-07-25

Release history

Release3.323.33
Date2018-07-272018-08-03

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_12111.1NR_4.0_12111.23.34(10) 6D8F|1|C, 6D8A|1|H, 6D9K|1|H, 6D8A|1|C, 6D9K|1|C, 6D92|1|H, 6D92|1|C, 6D8P|1|E, 6D8P|1|C, 6D8F|1|H(0) (2) 6D95|1|H, 6D95|1|B

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16D92|1|CTernary RsAgo Complex with Guide RNA and Target DNA Containing A-A non-canonical pair at position 3X-RAY DIFFRACTION1.8118
26D8A|1|CRsAgo Ternary Complex with guide RNA and Target DNA Containing A-A Bulge Within the Seed Segment of the Target StrandX-RAY DIFFRACTION2.2518
36D8F|1|CRsAgo Ternary Complex with Guide RNA and Target DNA Containing T-T Bulge Within the Seed SegmentX-RAY DIFFRACTION2.1518
46D8P|1|ETernary RsAgo Complex Containing Guide RNA Paired with Target DNAX-RAY DIFFRACTION2.118
56D9K|1|CTernary RsAgo Complex with Guide RNA and Target DNA Containing A-G Non-canonical PairX-RAY DIFFRACTION218
66D9K|1|HTernary RsAgo Complex with Guide RNA and Target DNA Containing A-G Non-canonical PairX-RAY DIFFRACTION218
76D8P|1|CTernary RsAgo Complex Containing Guide RNA Paired with Target DNAX-RAY DIFFRACTION2.118
86D8F|1|HRsAgo Ternary Complex with Guide RNA and Target DNA Containing T-T Bulge Within the Seed SegmentX-RAY DIFFRACTION2.1518
96D8A|1|HRsAgo Ternary Complex with guide RNA and Target DNA Containing A-A Bulge Within the Seed Segment of the Target StrandX-RAY DIFFRACTION2.2518
106D92|1|HTernary RsAgo Complex with Guide RNA and Target DNA Containing A-A non-canonical pair at position 3X-RAY DIFFRACTION1.8118