#PDBTitleRNA source organismCompoundsMethodResolutionDate
14FAW|A (rep)Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragmentOceanobacillus iheyensisGroup IIC intron, 5'-R(*A*UP*UP*UP*AP*UP*UP*A)-3'X-RAY DIFFRACTION2.72012-11-14
23BWP|ACrystal structure of a self-spliced group II intronGroup IIC intronX-RAY DIFFRACTION3.12008-04-15
33EOG|ACo-crystallization showing exon recognition by a group II intronGroup IIC intron, 5'-R(*UP*UP*AP*UP*UP*A)-3'X-RAY DIFFRACTION3.392008-10-28
43EOH|ARefined group II intron structureGroup IIC intron, 5'-R(*UP*UP*AP*UP*UP*A)-3'X-RAY DIFFRACTION3.122008-10-28
53G78|AInsight into group II intron catalysis from revised crystal structureOceanobacillus iheyensisGroup II intron, Ligated EXON productX-RAY DIFFRACTION2.82010-02-16
63IGI|ATertiary Architecture of the Oceanobacillus Iheyensis Group II IntronGroup IIC intron, 5'-R(*CP*GP*CP*UP*CP*UP*AP*CP*UP*CP*UP*AP*U)-3'X-RAY DIFFRACTION3.122009-12-22
74DS6|ACrystal structure of a group II intron in the pre-catalytic stateOceanobacillus iheyensisMutant Group IIC IntronX-RAY DIFFRACTION3.642012-04-18
84E8K|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and a non-hydrolyzed oligonucleotide substrateOceanobacillus iheyensisGroup IIC intron, 5'-R(*CP*G*AP*UP*UP*UP*AP*UP*UP*A)-3'X-RAY DIFFRACTION3.032012-11-14
94E8M|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Mg2+Oceanobacillus iheyensisGroup IIC intronX-RAY DIFFRACTION3.52012-11-14
104E8N|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of NH4+ and Mg2+Oceanobacillus iheyensisGroup IIC intronX-RAY DIFFRACTION2.962012-11-14
114E8P|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Rb+ and Mg2+Oceanobacillus iheyensisGroup IIC intronX-RAY DIFFRACTION3.282012-11-14
124E8Q|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+Oceanobacillus iheyensisGroup IIC intronX-RAY DIFFRACTION2.842012-11-14
134E8R|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Cs+ and Mg2+Oceanobacillus iheyensisGroup IIC intronX-RAY DIFFRACTION3.362012-11-14
144E8T|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and an oligonucleotide fragment substrate (low energy dataset)Oceanobacillus iheyensisGroup IIC intron, 5'-R(*AP*UP*UP*UP*AP*UP*UP*A)-3'X-RAY DIFFRACTION3.342012-11-14
154E8V|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Ba2+Oceanobacillus iheyensisGroup IIC intronX-RAY DIFFRACTION3.992012-11-14
164FAQ|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and 5'-exonOceanobacillus iheyensisGroup IIC intronX-RAY DIFFRACTION3.112012-11-14
174FAR|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exonOceanobacillus iheyensisGruup IIC intron, Group IIC intronX-RAY DIFFRACTION2.862012-11-14
184FAU|AStructure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exonOceanobacillus iheyensisGroup IIC intronX-RAY DIFFRACTION2.872012-11-14
194FAX|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Na+ and Mg2+Oceanobacillus iheyensisGroup IIC intronX-RAY DIFFRACTION3.12012-11-14
204FB0|AStructure of Oceanobacillus iheyensis group II intron C377G mutant in a ligand-free state in the presence of K+ and Mg2+Oceanobacillus iheyensisGroup IIC intronX-RAY DIFFRACTION3.222012-11-14

Release history

Release0.960.970.980.990.1000.1010.1020.1030.1040.1050.1060.1070.1080.1090.1101.01.11.21.31.41.51.61.71.81.91.101.111.121.131.141.151.161.171.181.191.201.211.221.231.241.251.261.271.281.291.301.311.321.331.341.351.361.371.381.391.401.411.421.431.441.451.461.471.481.491.501.511.521.531.541.551.561.571.581.591.601.611.621.631.641.651.661.671.681.691.701.711.721.731.741.751.761.771.781.791.801.811.821.831.841.851.861.871.881.89
Date2012-11-172012-11-242012-12-012012-12-082012-12-152012-12-222012-12-292013-01-052013-01-122013-01-192013-01-262013-02-022013-02-092013-02-162013-02-232013-03-022013-03-092013-03-162013-03-232013-03-302013-04-062013-04-132013-04-202013-04-272013-05-042013-05-112013-05-182013-05-252013-06-012013-06-082013-06-152013-06-222013-06-292013-07-062013-07-132013-07-202013-07-272013-08-032013-08-102013-08-172013-08-242013-08-312013-09-072013-09-142013-09-212013-09-282013-10-052013-10-122013-10-192013-10-262013-11-092013-11-162013-11-232013-11-302013-12-072013-12-142013-12-212013-12-282014-01-042014-01-112014-01-182014-01-252014-02-012014-02-082014-02-152014-02-222014-03-012014-03-082014-03-172014-03-222014-03-292014-04-052014-04-122014-04-192014-04-262014-05-032014-05-102014-05-172014-05-312014-06-072014-06-132014-06-202014-06-272014-07-042014-07-182014-07-252014-08-012014-08-082014-08-152014-08-222014-08-292014-09-052014-09-122014-09-192014-09-262014-10-032014-10-102014-10-172014-10-242014-10-312014-11-072014-11-142014-11-212014-11-282014-12-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This classDescendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14FAX|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Na+ and Mg2+X-RAY DIFFRACTION3.1394
24E8R|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Cs+ and Mg2+X-RAY DIFFRACTION3.36393
34E8N|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of NH4+ and Mg2+X-RAY DIFFRACTION2.96393
44E8Q|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+X-RAY DIFFRACTION2.84393
54E8P|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Rb+ and Mg2+X-RAY DIFFRACTION3.28393
64FB0|AStructure of Oceanobacillus iheyensis group II intron C377G mutant in a ligand-free state in the presence of K+ and Mg2+X-RAY DIFFRACTION3.22393
74E8M|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Mg2+X-RAY DIFFRACTION3.5394
84FAW|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragmentX-RAY DIFFRACTION2.7394
94FAR|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exonX-RAY DIFFRACTION2.86390
104FAU|AStructure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exonX-RAY DIFFRACTION2.87398
114DS6|ACrystal structure of a group II intron in the pre-catalytic stateX-RAY DIFFRACTION3.64422
123G78|AInsight into group II intron catalysis from revised crystal structureX-RAY DIFFRACTION2.8412
133IGI|ATertiary Architecture of the Oceanobacillus Iheyensis Group II IntronX-RAY DIFFRACTION3.12412
144E8T|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and an oligonucleotide fragment substrate (low energy dataset)X-RAY DIFFRACTION3.34393
154E8K|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and a non-hydrolyzed oligonucleotide substrateX-RAY DIFFRACTION3.03393
164FAQ|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and 5'-exonX-RAY DIFFRACTION3.11396
174E8V|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Ba2+X-RAY DIFFRACTION3.99393
183EOH|ARefined group II intron structureX-RAY DIFFRACTION3.12412
193EOG|ACo-crystallization showing exon recognition by a group II intronX-RAY DIFFRACTION3.39412
203BWP|ACrystal structure of a self-spliced group II intronX-RAY DIFFRACTION3.1412