#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
18V87|1|6 (rep)ITS2 RNASaccharomyces cerevisiae BY474160S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)Electron microscopy2.662024-05-01
28V83|1|6Saccharomyces cerevisiae ITS-2Saccharomyces cerevisiae BY474160S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)Electron microscopy2.532024-05-01
38V84|1|6ITS2 RNASaccharomyces cerevisiae BY474160S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)Electron microscopy2.72024-05-01
47OHQ|1|6ITS2Saccharomyces cerevisiae S288CNog1-TAP associated immature ribosomal particle population C from S. cerevisiaeElectron microscopy3.12021-11-03
56M62|1|6ITS2-1 miscRNASaccharomyces cerevisiaeCryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.Electron microscopy3.22020-08-26
66EM3|1|65.8S ribosomal RNASaccharomyces cerevisiaeState A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesElectron microscopy3.22017-12-27
77BTB|1|6ITS2-1 miscRNASaccharomyces cerevisiaeCryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)Electron microscopy3.222020-10-28
87OHX|1|6ITS2Saccharomyces cerevisiae S288CNog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population AElectron microscopy3.32021-11-03
96ELZ|1|6Internal transcribed spacer 2Saccharomyces cerevisiaeState E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmesElectron microscopy3.32017-12-27
106C0F|1|6ITS2Saccharomyces cerevisiaeYeast nucleolar pre-60S ribosomal subunit (state 2)Electron microscopy3.72018-03-14
113JCT|1|6ITS2-1 miscRNASaccharomyces cerevisiaeCryo-em structure of eukaryotic pre-60S ribosomal subunitsElectron microscopy3.082016-06-01
126EM1|1|65.8S ribosomal RNASaccharomyces cerevisiaeState C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesElectron microscopy3.62017-12-27
136YLY|1|6ITS2Saccharomyces cerevisiaepre-60S State NE2 (TAP-Flag-Nop53)Electron microscopy3.82020-07-29
148E5T|1|3ITS2 ribosomal RNASaccharomyces cerevisiae BY4741Yeast co-transcriptional Noc1-Noc2 RNP assembly checkpoint intermediateElectron microscopy42023-04-12
157OHP|1|6ITS2Saccharomyces cerevisiae S288CNog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population AElectron microscopy3.92021-11-03
167OHV|1|6ITS2Saccharomyces cerevisiae S288CNog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population CElectron microscopy3.92021-11-03
176YLX|1|6ITS2Saccharomyces cerevisiaepre-60S State NE1 (TAP-Flag-Nop53)Electron microscopy3.92020-07-29
187OHW|1|6ITS2Saccharomyces cerevisiae S288CNog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population BElectron microscopy3.52021-11-03
195Z3G|1|CITS2 RNASaccharomyces cerevisiaeCryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)Electron microscopy3.652018-04-11

Release history

Release3.3333.3343.3353.3363.3373.3383.3393.3403.3413.3423.343
Date2024-05-012024-05-082024-05-152024-05-222024-05-292024-06-052024-06-122024-06-192024-06-262024-07-032024-07-10

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16YLY|1|6pre-60S State NE2 (TAP-Flag-Nop53)ELECTRON MICROSCOPY3.865
26YLX|1|6pre-60S State NE1 (TAP-Flag-Nop53)ELECTRON MICROSCOPY3.965
38V83|1|660S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)ELECTRON MICROSCOPY2.5358
48V84|1|660S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)ELECTRON MICROSCOPY2.758
58V87|1|660S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)ELECTRON MICROSCOPY2.6687
67OHQ|1|6Nog1-TAP associated immature ribosomal particle population C from S. cerevisiaeELECTRON MICROSCOPY3.165
76M62|1|6Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.ELECTRON MICROSCOPY3.265
83JCT|1|6Cryo-em structure of eukaryotic pre-60S ribosomal subunitsELECTRON MICROSCOPY3.0865
97BTB|1|6Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)ELECTRON MICROSCOPY3.2265
106C0F|1|6Yeast nucleolar pre-60S ribosomal subunit (state 2)ELECTRON MICROSCOPY3.787
118E5T|1|3Yeast co-transcriptional Noc1-Noc2 RNP assembly checkpoint intermediateELECTRON MICROSCOPY487
125Z3G|1|CCryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)ELECTRON MICROSCOPY3.6565
137OHP|1|6Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population AELECTRON MICROSCOPY3.965
147OHW|1|6Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population BELECTRON MICROSCOPY3.565
157OHV|1|6Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population CELECTRON MICROSCOPY3.965
166EM1|1|6State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesELECTRON MICROSCOPY3.665
176ELZ|1|6State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmesELECTRON MICROSCOPY3.365
187OHX|1|6Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population AELECTRON MICROSCOPY3.365
196EM3|1|6State A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesELECTRON MICROSCOPY3.265
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