Equivalence class NR_4.0_18489.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6ELZ|1|6 (rep) | Internal transcribed spacer 2 | Saccharomyces cerevisiae | Eukarya | State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmes | Electron microscopy | 3.3 | 2017-12-27 | ||
| 2 | 6C0F|1|6 | ITS2 | Saccharomyces cerevisiae | Eukarya | Yeast nucleolar pre-60S ribosomal subunit (state 2) | Electron microscopy | 3.7 | 2018-03-14 | ||
| 3 | 3JCT|1|6 | ITS2-1 miscRNA | Saccharomyces cerevisiae | Eukarya | Cryo-em structure of eukaryotic pre-60S ribosomal subunits | Electron microscopy | 3.08 | 2016-06-01 | ||
| 4 | 6EM1|1|6 | 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes | Electron microscopy | 3.6 | 2017-12-27 | ||
| 5 | 6YLY|1|6 | ITS2 | Saccharomyces cerevisiae | Eukarya | pre-60S State NE2 (TAP-Flag-Nop53) | Electron microscopy | 3.8 | 2020-07-29 | ||
| 6 | 6YLX|1|6 | ITS2 | Saccharomyces cerevisiae | Eukarya | pre-60S State NE1 (TAP-Flag-Nop53) | Electron microscopy | 3.9 | 2020-07-29 | ||
| 7 | 5Z3G|1|C | ITS2 RNA | Saccharomyces cerevisiae | Eukarya | Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP) | Electron microscopy | 3.65 | 2018-04-11 |
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6ELZ|1|6 | State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmes | ELECTRON MICROSCOPY | 3.3 | 65 |
| 2 | 6EM1|1|6 | State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes | ELECTRON MICROSCOPY | 3.6 | 65 |
| 3 | 3JCT|1|6 | Cryo-em structure of eukaryotic pre-60S ribosomal subunits | ELECTRON MICROSCOPY | 3.08 | 65 |
| 4 | 6C0F|1|6 | Yeast nucleolar pre-60S ribosomal subunit (state 2) | ELECTRON MICROSCOPY | 3.7 | 87 |
| 5 | 5Z3G|1|C | Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP) | ELECTRON MICROSCOPY | 3.65 | 65 |
| 6 | 6YLX|1|6 | pre-60S State NE1 (TAP-Flag-Nop53) | ELECTRON MICROSCOPY | 3.9 | 65 |
| 7 | 6YLY|1|6 | pre-60S State NE2 (TAP-Flag-Nop53) | ELECTRON MICROSCOPY | 3.8 | 65 |