#IFECompound(s)RNA source organismTitleMethodResolutionDate
15TBW|1|AS (rep)5S ribosomal RNASaccharomyces cerevisiaeCrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION32017-07-26
25TBW|1|35S ribosomal RNASaccharomyces cerevisiaeCrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION32017-07-26
34V88|1|A35S rRNASaccharomyces cerevisiaeThe structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION32014-07-09
44V88|1|A75S rRNASaccharomyces cerevisiaeThe structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION32014-07-09
55I4L|1|75S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12016-06-22
66HHQ|1|AS5S ribosomal RNASaccharomyces cerevisiaeCrystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12019-02-20
75MEI|1|AS5S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.52017-06-28
85MEI|1|35S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.52017-06-28
95OBM|1|75S Ribosomal RNASaccharomyces cerevisiaeCrystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.42017-12-13
106HHQ|1|35S ribosomal RNASaccharomyces cerevisiaeCrystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12019-02-20
115LYB|1|75S rRNASaccharomyces cerevisiaeCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.252016-11-23
125ON6|1|35S ribosomal RNASaccharomyces cerevisiaeCrystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.12018-02-28
135I4L|1|35S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12016-06-22
145ON6|1|AS5S ribosomal RNASaccharomyces cerevisiaeCrystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.12018-02-28
155LYB|1|35S rRNASaccharomyces cerevisiaeCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.252016-11-23
165OBM|1|35S Ribosomal RNASaccharomyces cerevisiaeCrystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.42017-12-13
175NDW|1|75S ribosomal RNASaccharomyces cerevisiaeCrystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.72017-12-13
185NDW|1|35S ribosomal RNASaccharomyces cerevisiaeCrystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.72017-12-13
195NDV|1|75S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32017-12-13
205NDV|1|35S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32017-12-13
215NDG|1|75S ribosomal RNASaccharomyces cerevisiaeCrystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.72017-12-13
225NDG|1|35S ribosomal RNASaccharomyces cerevisiaeCrystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.72017-12-13
235TGM|1|75S ribosomal RNASaccharomyces cerevisiaeCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.52017-01-18
245TGM|1|35S ribosomal RNASaccharomyces cerevisiaeCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.52017-01-18
254V7R|1|B25S ribosomal RNASaccharomyces cerevisiaeYeast 80S ribosome.X-RAY DIFFRACTION42014-07-09
264V7R|1|D25S ribosomal RNASaccharomyces cerevisiaeYeast 80S ribosome.X-RAY DIFFRACTION42014-07-09
275DAT|1|75S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.152016-08-31
285DGV|1|75S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.12016-12-14
295DGF|1|75S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.32016-12-14
305DAT|1|35S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.152016-08-31
315DGE|1|75S ribosomal RNASaccharomyces cerevisiaeCoping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.452017-01-25
325DGV|1|35S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.12016-12-14
335TGA|1|75S ribosomal RNASaccharomyces cerevisiaeCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.32016-11-23
345DC3|1|75S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.252016-06-01
355DGE|1|35S ribosomal RNASaccharomyces cerevisiaeCoping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.452017-01-25
365DC3|1|35S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.252016-06-01
375TGA|1|35S ribosomal RNASaccharomyces cerevisiaeCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.32016-11-23
385DGF|1|35S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.32016-12-14
396T4Q|1|C45S rRNASaccharomyces cerevisiaeStructure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.ELECTRON MICROSCOPY2.62019-12-25
406TB3|1|BR5S rRNASaccharomyces cerevisiaeyeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexELECTRON MICROSCOPY2.82020-04-22
416SNT|1|45S rRNASaccharomyces cerevisiaeYeast 80S ribosome stalled on SDD1 mRNA.ELECTRON MICROSCOPY2.82020-03-04
427AZY|1|F5S ribosomal RNAContext-specific inhibition of eukaryotic translation by macrolide antibioticsELECTRON MICROSCOPY2.8772021-05-19
434U4R|1|35S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.82014-10-22
444U3U|1|75S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.92014-10-22
456WOO|1|75S ribosomal RNASaccharomyces cerevisiaeCryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPELECTRON MICROSCOPY2.92020-09-23
464U4R|1|75S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.82014-10-22
474U3U|1|35S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.92014-10-22
484U4Q|1|75S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
494U4Q|1|35S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
504U3M|1|75.8s rRNASaccharomyces cerevisiaeCrystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
514U52|1|75S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
524U3M|1|35.8s rRNASaccharomyces cerevisiaeCrystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
536QIK|1|x5S ribosomal RNASaccharomyces cerevisiaeCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.12019-06-26
547OHQ|1|35S rRNANog1-TAP associated immature ribosomal particle population C from S. cerevisiaeELECTRON MICROSCOPY3.12021-11-03
554U4U|1|75S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
567BT6|1|3RDN5-2 rRNASaccharomyces cerevisiaeCryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)ELECTRON MICROSCOPY3.122020-10-28
576Q8Y|1|BR5S ribosomal RNASaccharomyces cerevisiaeCryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complexELECTRON MICROSCOPY3.12019-03-13
586YLG|1|35S rRNASaccharomyces cerevisiaeRix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)ELECTRON MICROSCOPY32020-07-29
594U6F|1|75S ribosomal RNASaccharomyces cerevisiaeCrystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
605T62|1|B5S Ribosomal RNASaccharomyces cerevisiaeNmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 ComplexELECTRON MICROSCOPY3.12017-02-08
614U52|1|35S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
624U4U|1|35S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
636T7T|1|C45S rRNASaccharomyces cerevisiaeStructure of yeast 80S ribosome stalled on poly(A) tract.ELECTRON MICROSCOPY3.12019-12-25
646XIR|1|35S ribosomal RNASaccharomyces cerevisiaeCryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative StressELECTRON MICROSCOPY3.22020-08-26
656RZZ|1|x5S ribosomal RNASaccharomyces cerevisiaeCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.22019-06-26
666M62|1|3RDN5-2 rRNASaccharomyces cerevisiaeCryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.ELECTRON MICROSCOPY3.22020-08-26
677BTB|1|3RDN5-2 rRNASaccharomyces cerevisiaeCryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)ELECTRON MICROSCOPY3.222020-10-28
686YLH|1|35S rRNASaccharomyces cerevisiaeRix1-Rea1 pre-60S particle - full composite structureELECTRON MICROSCOPY3.12020-07-29
694U4N|1|75S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
704U6F|1|35S ribosomal RNASaccharomyces cerevisiaeCrystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
716TNU|1|BR5S rRNASaccharomyces cerevisiaeYeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.ELECTRON MICROSCOPY3.12020-04-22
723JCT|1|3RDN5-2 rRNASaccharomyces cerevisiaeCryo-em structure of eukaryotic pre-60S ribosomal subunitsELECTRON MICROSCOPY3.082016-06-01
734U3N|1|35S ribosomal RNASaccharomyces cerevisiaeCrystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
744U4Z|1|75S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
754U4N|1|35S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
766T7I|1|C45S ribosomal RNASaccharomyces cerevisiaeStructure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.ELECTRON MICROSCOPY3.22019-12-25
777B7D|1|LB5S rRNAYeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAsELECTRON MICROSCOPY3.32021-03-10
786RI5|1|x5S rRNASaccharomyces cerevisiaeCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.32019-06-26
796S47|1|AB5S ribosomal RNASaccharomyces cerevisiaeSaccharomyces cerevisiae 80S ribosome bound with ABCF protein New1ELECTRON MICROSCOPY3.282019-07-24
804U4Z|1|35S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
814U55|1|75S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
824U50|1|35S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
835M1J|1|345S ribosomal RNASaccharomyces cerevisiaeNonstop ribosomal complex bound with Dom34 and Hbs1ELECTRON MICROSCOPY3.32017-01-18
844U50|1|75S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
854U3N|1|75S ribosomal RNASaccharomyces cerevisiaeCrystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
864U4Y|1|75S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
874U4Y|1|35S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
884U51|1|75S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
896Z6K|1|C45S rRNASaccharomyces cerevisiaeCryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomesELECTRON MICROSCOPY3.42020-07-29
906Z6J|1|C45S rRNASaccharomyces cerevisiaeCryo-EM structure of yeast Lso2 bound to 80S ribosomes under native conditionELECTRON MICROSCOPY3.42020-07-29
916QT0|1|x5S rRNASaccharomyces cerevisiaeCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.42019-06-26
927OH3|1|35S rRNANog1-TAP associated immature ribosomal particle population B from S. cerevisiaeELECTRON MICROSCOPY3.42021-11-03
934U55|1|35S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
945H4P|1|35S ribosomal RNASaccharomyces cerevisiaeStructural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1ELECTRON MICROSCOPY3.072017-01-25
956SV4|1|YR5S rRNASaccharomyces cerevisiaeThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.32020-03-04
966SV4|1|ZR5S rRNASaccharomyces cerevisiaeThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.32020-03-04
974U53|1|35S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32014-10-22
985APO|1|75S ribosomal RNASaccharomyces cerevisiaeStructure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1ELECTRON MICROSCOPY3.412015-12-16
996QTZ|1|x5S rRNASaccharomyces cerevisiaeCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.52019-06-26
1006R86|1|35S ribosomal RNASaccharomyces cerevisiaeYeast Vms1-60S ribosomal subunit complex (post-state)ELECTRON MICROSCOPY3.42019-07-31
1016N8M|1|B5S rRNASaccharomyces cerevisiaeCryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunitELECTRON MICROSCOPY3.52019-03-13
1024U51|1|35S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
1034U53|1|75S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32014-10-22
1046SV4|1|BR5S rRNASaccharomyces cerevisiaeThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.32020-03-04
1056N8O|1|B5S rRNASaccharomyces cerevisiaeCryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunitELECTRON MICROSCOPY3.52019-03-13
1066N8J|1|25S rRNASaccharomyces cerevisiaeCryo-EM structure of late nuclear (LN) pre-60S ribosomal subunitELECTRON MICROSCOPY3.52019-03-13
1076R87|1|35S rRNASaccharomyces cerevisiaeYeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)ELECTRON MICROSCOPY3.42019-06-26
1086HD7|1|35S rRNASaccharomyces cerevisiaeCryo-EM structure of the ribosome-NatA complexELECTRON MICROSCOPY3.42018-12-19
1095JUP|1|D5S ribosomal RNASaccharomyces cerevisiaeSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)ELECTRON MICROSCOPY3.52016-10-05
1106N8K|1|25S rRNASaccharomyces cerevisiaeCryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunitELECTRON MICROSCOPY3.62019-03-13
1116N8L|1|25S rRNASaccharomyces cerevisiaeCryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunitELECTRON MICROSCOPY3.62019-03-13
1124U56|1|75S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.452014-10-22
1136R84|1|35S rRNASaccharomyces cerevisiaeYeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)ELECTRON MICROSCOPY3.62019-06-26
1144U56|1|35S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.452014-10-22
1156OIG|1|75S ribosomal RNASaccharomyces cerevisiaeSubunit joining exposes nascent pre-40S rRNA for processing and quality controlELECTRON MICROSCOPY3.82020-09-30
1166N8N|1|B5S rRNASaccharomyces cerevisiaeCryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunitELECTRON MICROSCOPY3.82019-03-13
1176S05|1|x5S ribosomal RNASaccharomyces cerevisiaeCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.92019-06-26
1187NRC|1|LB5S rRNA (121-MER)Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5AELECTRON MICROSCOPY3.92021-05-05
1196GQB|1|35S ribosomal RNASaccharomyces cerevisiaeCryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)ELECTRON MICROSCOPY3.92018-07-11
1205MC6|1|BR5S ribosomal RNASaccharomyces cerevisiaeCryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiaeELECTRON MICROSCOPY3.82017-01-18
1216T83|1|Bb5S rRNASaccharomyces cerevisiaeStructure of yeast disome (di-ribosome) stalled on poly(A) tract.ELECTRON MICROSCOPY42019-12-25
1226T83|1|4b5S rRNASaccharomyces cerevisiaeStructure of yeast disome (di-ribosome) stalled on poly(A) tract.ELECTRON MICROSCOPY42019-12-25
1235JUT|1|D5S ribosomal RNASaccharomyces cerevisiaeSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)ELECTRON MICROSCOPY42016-10-05
1246FT6|1|35S ribosomal RNASaccharomyces cerevisiaeStructure of the Nop53 pre-60S particle bound to the exosome nuclear cofactorsELECTRON MICROSCOPY3.92018-03-28
1255JUO|1|D5S ribosomal RNASaccharomyces cerevisiaeSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)ELECTRON MICROSCOPY42016-10-05
1265JUU|1|D5S ribosomal RNASaccharomyces cerevisiaeSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)ELECTRON MICROSCOPY42016-10-05
1276GQV|1|35S ribosomal RNASaccharomyces cerevisiaeCryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)ELECTRON MICROSCOPY42018-07-11
1285APN|1|75S rRNASaccharomyces cerevisiaeStructure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1ELECTRON MICROSCOPY3.912015-12-16
1294U4O|1|75S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.62014-10-22
1304U4O|1|35S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.62014-10-22
1315GAK|1|35S rRNASaccharomyces cerevisiaeYeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5AELECTRON MICROSCOPY3.882016-02-24
1327OF1|1|35S rRNANog1-TAP associated immature ribosomal particle population A from S. cerevisiaeELECTRON MICROSCOPY3.12021-11-03

Release history

Release3.203
Date2021-11-03

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17OF1|1|3Nog1-TAP associated immature ribosomal particle population A from S. cerevisiaeELECTRON MICROSCOPY3.143
25JUO|1|DSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)ELECTRON MICROSCOPY4121
35JUT|1|DSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)ELECTRON MICROSCOPY4121
45JUU|1|DSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)ELECTRON MICROSCOPY4121
55JUP|1|DSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)ELECTRON MICROSCOPY3.5121
65GAK|1|3Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5AELECTRON MICROSCOPY3.88121
76HD7|1|3Cryo-EM structure of the ribosome-NatA complexELECTRON MICROSCOPY3.4121
85MC6|1|BRCryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiaeELECTRON MICROSCOPY3.8121
94U4O|1|7Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.6121
105TGM|1|7Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.5121
115DGE|1|7Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.45121
125DC3|1|7Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.25121
135DAT|1|7Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.15121
145DGF|1|7Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.3121
155DGV|1|7Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.1121
164U6F|1|7Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
174U52|1|7Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
184U50|1|7Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
194U51|1|7Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
204U53|1|7Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.3121
214U4U|1|7Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
224U4Q|1|7Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
234U4N|1|7Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
244U4Z|1|7Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
254U3N|1|7Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
264U55|1|7Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
274U4Y|1|7Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
284U3M|1|7Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
294U4R|1|7Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.8121
304U3U|1|7Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.9121
314V88|1|A7The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION3121
325I4L|1|7Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
335LYB|1|7Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.25121
345TGA|1|7Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.3121
354U56|1|7Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.45121
365MEI|1|ASCrystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.5121
375ON6|1|ASCrystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.1121
386HHQ|1|ASCrystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
395TBW|1|ASCrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
405APO|1|7Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1ELECTRON MICROSCOPY3.41121
415APN|1|7Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1ELECTRON MICROSCOPY3.91121
425NDG|1|7Crystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.7121
435NDW|1|7Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.7121
445NDV|1|7Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.3121
454U4O|1|3Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.6121
465TGM|1|3Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.5121
475DGF|1|3Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.3121
485DGE|1|3Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.45121
495DC3|1|3Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.25121
505DAT|1|3Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.15121
515DGV|1|3Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.1121
525LYB|1|3Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.25121
535TGA|1|3Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.3121
545MEI|1|3Crystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.5121
554U50|1|3Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
564U53|1|3Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.3121
575I4L|1|3Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
584U4Y|1|3Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
594U4Q|1|3Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
604U4U|1|3Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
614U3M|1|3Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
626HHQ|1|3Crystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
634U4N|1|3Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
644U4Z|1|3Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
654U3N|1|3Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
664U3U|1|3Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.9121
674U4R|1|3Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.8121
684V88|1|A3The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION3121
695TBW|1|3Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
705ON6|1|3Crystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.1121
714U52|1|3Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
724U6F|1|3Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
734U55|1|3Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
744U51|1|3Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
754U56|1|3Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.45121
765NDW|1|3Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.7121
775NDG|1|3Crystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.7121
785NDV|1|3Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.3121
796WOO|1|7CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPELECTRON MICROSCOPY2.9121
806S47|1|ABSaccharomyces cerevisiae 80S ribosome bound with ABCF protein New1ELECTRON MICROSCOPY3.28121
816TB3|1|BRyeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexELECTRON MICROSCOPY2.8121
826T4Q|1|C4Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.ELECTRON MICROSCOPY2.6121
836SNT|1|4Yeast 80S ribosome stalled on SDD1 mRNA.ELECTRON MICROSCOPY2.8121
846T7T|1|C4Structure of yeast 80S ribosome stalled on poly(A) tract.ELECTRON MICROSCOPY3.1121
856T7I|1|C4Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.ELECTRON MICROSCOPY3.2121
866Q8Y|1|BRCryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complexELECTRON MICROSCOPY3.1121
877AZY|1|FContext-specific inhibition of eukaryotic translation by macrolide antibioticsELECTRON MICROSCOPY2.877121
886Z6J|1|C4Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native conditionELECTRON MICROSCOPY3.4121
896Z6K|1|C4Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomesELECTRON MICROSCOPY3.4121
907B7D|1|LBYeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAsELECTRON MICROSCOPY3.3121
916TNU|1|BRYeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.ELECTRON MICROSCOPY3.1121
927NRC|1|LBStructure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5AELECTRON MICROSCOPY3.9121
936T83|1|4bStructure of yeast disome (di-ribosome) stalled on poly(A) tract.ELECTRON MICROSCOPY4121
946T83|1|BbStructure of yeast disome (di-ribosome) stalled on poly(A) tract.ELECTRON MICROSCOPY4121
956SV4|1|BRThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.3121
966SV4|1|YRThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.3121
976SV4|1|ZRThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.3121
986R87|1|3Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)ELECTRON MICROSCOPY3.4121
996R84|1|3Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)ELECTRON MICROSCOPY3.6121
1006R86|1|3Yeast Vms1-60S ribosomal subunit complex (post-state)ELECTRON MICROSCOPY3.4121
1016RI5|1|xCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.3121
1026QTZ|1|xCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.5121
1035OBM|1|7Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.4121
1045OBM|1|3Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.4121
1056QT0|1|xCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.4121
1065M1J|1|34Nonstop ribosomal complex bound with Dom34 and Hbs1ELECTRON MICROSCOPY3.3121
1076XIR|1|3Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative StressELECTRON MICROSCOPY3.2121
1083JCT|1|3Cryo-em structure of eukaryotic pre-60S ribosomal subunitsELECTRON MICROSCOPY3.08121
1096S05|1|xCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.9121
1106QIK|1|xCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.1121
1116RZZ|1|xCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.2121
1125T62|1|BNmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 ComplexELECTRON MICROSCOPY3.1121
1136N8O|1|BCryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunitELECTRON MICROSCOPY3.5121
1146N8M|1|BCryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunitELECTRON MICROSCOPY3.5121
1156N8N|1|BCryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunitELECTRON MICROSCOPY3.8121
1166N8K|1|2Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunitELECTRON MICROSCOPY3.6121
1176N8L|1|2Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunitELECTRON MICROSCOPY3.6121
1185H4P|1|3Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1ELECTRON MICROSCOPY3.07121
1196N8J|1|2Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunitELECTRON MICROSCOPY3.5121
1206GQB|1|3Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)ELECTRON MICROSCOPY3.9121
1216GQV|1|3Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)ELECTRON MICROSCOPY4121
1226OIG|1|7Subunit joining exposes nascent pre-40S rRNA for processing and quality controlELECTRON MICROSCOPY3.8121
1236YLH|1|3Rix1-Rea1 pre-60S particle - full composite structureELECTRON MICROSCOPY3.1117
1246YLG|1|3Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)ELECTRON MICROSCOPY3117
1257BTB|1|3Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)ELECTRON MICROSCOPY3.22121
1266FT6|1|3Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactorsELECTRON MICROSCOPY3.9121
1277OHQ|1|3Nog1-TAP associated immature ribosomal particle population C from S. cerevisiaeELECTRON MICROSCOPY3.1121
1287OH3|1|3Nog1-TAP associated immature ribosomal particle population B from S. cerevisiaeELECTRON MICROSCOPY3.4121
1297BT6|1|3Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)ELECTRON MICROSCOPY3.12121
1306M62|1|3Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.ELECTRON MICROSCOPY3.2121
1314V7R|1|B2Yeast 80S ribosome.X-RAY DIFFRACTION4121
1324V7R|1|D2Yeast 80S ribosome.X-RAY DIFFRACTION4121