BGSU RNA Site //

Equivalence class NR_4.0_20829.6 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
16BK8|1|2+ 6BK8|1|6+ 6BK8|1|i (rep)U2 splicesomal small nuclear RNA + U6 spliceosomal RNAU2 snRNA, U6 snRNA, RNA (59-MER)Saccharomyces cerevisiaeEukaryaRF00004 + RF00026S. cerevisiae spliceosomal post-catalytic P complexElectron microscopy3.32018-02-21
26EXN|1|2+ 6EXN|1|6U2 splicesomal small nuclear RNA + U6 spliceosomal RNAU2 snRNA, U6 snRNA, Intron lariat: UBC4 RNASaccharomyces cerevisiaeEukaryaRF00004 + RF00026Post-catalytic P complex spliceosome with 3' splice site dockedElectron microscopy3.72018-01-17
35ZWM|1|H+ 5ZWM|1|I+ 5ZWM|1|FU2 splicesomal small nuclear RNA + U4 spliceosomal RNA + U6 spliceosomal RNAU2 snRNA, U4 snRNA, U6 snRNA, Pre-mRNA-BPSSaccharomyces cerevisiaeEukaryaRF00004 + RF00015 + RF00026Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.4~4.6 angstrom (tri-snRNP and U2 snRNP Part)Electron microscopy3.42018-08-29
45LJ3|1|Z+ 5LJ3|1|VU2 splicesomal small nuclear RNA + U6 spliceosomal RNAU2 snRNA (small nuclear RNA), U6 snRNA (small nuclear RNA), Intron of UBC4 pre-mRNASaccharomyces cerevisiaeEukaryaRF00004 + RF00026Structure of the core of the yeast spliceosome immediately after branchingElectron microscopy3.82016-08-03
55ZWO|1|H+ 5ZWO|1|I+ 5ZWO|1|FU2 splicesomal small nuclear RNA + U4 spliceosomal RNA + U6 spliceosomal RNAU2 snRNA, U4 snRNA, U6 snRNA, Pre-mRNASaccharomyces cerevisiaeEukaryaRF00004 + RF00015 + RF00026Cryo-EM structure of the yeast B complex at average resolution of 3.9 angstromElectron microscopy3.92018-08-29

Release history

Release3.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.70
Date2018-08-312018-09-072018-09-142018-09-212018-09-282018-10-052018-10-122018-10-192018-10-262018-11-022018-11-092018-11-162018-11-232018-11-302018-12-072018-12-142018-12-212018-12-282019-01-042019-01-112019-01-182019-01-252019-02-012019-02-082019-02-152019-02-222019-03-012019-03-082019-03-152019-03-222019-03-292019-04-052019-04-122019-04-19

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_20829.6NR_4.0_20829.53.37(3) 6EXN|1|2+6EXN|1|6, 6BK8|1|2+6BK8|1|6+6BK8|1|i, 5LJ3|1|Z+5LJ3|1|V(2) 5ZWO|1|H+5ZWO|1|I+5ZWO|1|F, 5ZWM|1|H+5ZWM|1|I+5ZWM|1|F(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_20829.6NR_4.0_20829.73.71(5) 6BK8|1|2+6BK8|1|6+6BK8|1|i, 5ZWO|1|H+5ZWO|1|I+5ZWO|1|F, 5ZWM|1|H+5ZWM|1|I+5ZWM|1|F, 5LJ3|1|Z+5LJ3|1|V, 6EXN|1|2+6EXN|1|6(0) (4) 6J6G|1|L+6J6G|1|E, 6J6Q|1|L+6J6Q|1|E, 6J6N|1|L+6J6N|1|E, 6J6H|1|L+6J6H|1|E

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15ZWO|1|H+5ZWO|1|I+5ZWO|1|FCryo-EM structure of the yeast B complex at average resolution of 3.9 angstromELECTRON MICROSCOPY3.9150
25ZWM|1|H+5ZWM|1|I+5ZWM|1|FCryo-EM structure of the yeast pre-B complex at an average resolution of 3.4~4.6 angstrom (tri-snRNP and U2 snRNP Part)ELECTRON MICROSCOPY3.4206
35LJ3|1|Z+5LJ3|1|VStructure of the core of the yeast spliceosome immediately after branchingELECTRON MICROSCOPY3.8171
46BK8|1|2+6BK8|1|6+6BK8|1|iS. cerevisiae spliceosomal post-catalytic P complexELECTRON MICROSCOPY3.3135
56EXN|1|2+6EXN|1|6Post-catalytic P complex spliceosome with 3' splice site dockedELECTRON MICROSCOPY3.7136