#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
17Z4D|1|A (rep)sgRNAsynthetic constructCrystal structure of SpCas9 bound to a 10 nucleotide complementary DNA substrateX-ray diffraction3.12022-08-31
27Z4D|1|FsgRNAsynthetic constructCrystal structure of SpCas9 bound to a 10 nucleotide complementary DNA substrateX-ray diffraction3.12022-08-31
37Z4L|1|AsgRNAsynthetic constructSpCas9 bound to 18-nucleotide complementary DNA substrate in the checkpoint stateElectron microscopy2.542022-08-31
47S4X|1|BgRNAsynthetic constructCas9:gRNA in complex with 18-20MM DNA, 1 minute time-point, kinked active conformationElectron microscopy2.762022-03-02
57Z4J|1|AsgRNAsynthetic constructSpCas9 bound to 18-nucleotide complementary DNA substrate in the catalytic stateElectron microscopy2.992022-08-31
68U3Y|1|BRNA (98-MER)synthetic constructSpG Cas9 with NGG PAM DNA targetElectron microscopy3.12024-05-01
76O0X|1|Bsingle guide RNAsynthetic constructConformational states of Cas9-sgRNA-DNA ternary complex in the presence of magnesiumElectron microscopy3.282019-07-10
87Z4I|1|AsgRNAsynthetic constructSpCas9 bound to 16-nucleotide complementary DNA substrateElectron microscopy3.122022-08-31
97S4V|1|BgRNAsynthetic constructCas9 bound to 12-14MM DNA, 60 min time-point, kinked conformationElectron microscopy3.282022-03-02
106O0Y|1|Bsingle guide RNAsynthetic constructConformational states of Cas9-sgRNA-DNA ternary complex in the presence of magnesiumElectron microscopy3.372019-07-10
116O0Z|1|Bsingle guide RNAsynthetic constructConformational states of Cas9-sgRNA-DNA ternary complex in the presence of magnesiumElectron microscopy3.32019-07-10
128TZZ|1|BRNA (98-MER)synthetic constructSpG Cas9 with NGC PAM DNA targetElectron microscopy3.562024-05-01
137S4U|1|BgRNAsynthetic constructCryo-EM structure of Cas9 in complex with 12-14MM DNA substrate, 5 minute time-pointElectron microscopy3.562022-03-02
147Z4H|1|AsgRNAsynthetic constructSpCas9 bound to 14-nucleotide complementary DNA substrateElectron microscopy3.492022-08-31
157Z4G|1|AsgRNAsynthetic constructSpCas9 bound to 12-nucleotide complementary DNA substrateElectron microscopy3.642022-08-31
167Z4C|1|AsgRNAsynthetic constructSpCas9 bound to 6 nucleotide complementary DNA substrateElectron microscopy3.872022-08-31
177Z4K|1|AsgRNAsynthetic constructSpCas9 bound to 10-nucleotide complementary DNA substrateElectron microscopy3.812022-08-31

Release history

Release3.3333.3343.3353.3363.3373.3383.3393.3403.3413.3423.343
Date2024-05-012024-05-082024-05-152024-05-222024-05-292024-06-052024-06-122024-06-192024-06-262024-07-032024-07-10

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17S4V|1|BCas9 bound to 12-14MM DNA, 60 min time-point, kinked conformationELECTRON MICROSCOPY3.2898
26O0Z|1|BConformational states of Cas9-sgRNA-DNA ternary complex in the presence of magnesiumELECTRON MICROSCOPY3.396
36O0X|1|BConformational states of Cas9-sgRNA-DNA ternary complex in the presence of magnesiumELECTRON MICROSCOPY3.2898
46O0Y|1|BConformational states of Cas9-sgRNA-DNA ternary complex in the presence of magnesiumELECTRON MICROSCOPY3.3798
58TZZ|1|BSpG Cas9 with NGC PAM DNA targetELECTRON MICROSCOPY3.5698
68U3Y|1|BSpG Cas9 with NGG PAM DNA targetELECTRON MICROSCOPY3.198
77Z4J|1|ASpCas9 bound to 18-nucleotide complementary DNA substrate in the catalytic stateELECTRON MICROSCOPY2.9998
87S4X|1|BCas9:gRNA in complex with 18-20MM DNA, 1 minute time-point, kinked active conformationELECTRON MICROSCOPY2.7698
97Z4C|1|ASpCas9 bound to 6 nucleotide complementary DNA substrateELECTRON MICROSCOPY3.8790
107Z4K|1|ASpCas9 bound to 10-nucleotide complementary DNA substrateELECTRON MICROSCOPY3.8188
117Z4H|1|ASpCas9 bound to 14-nucleotide complementary DNA substrateELECTRON MICROSCOPY3.4992
127Z4G|1|ASpCas9 bound to 12-nucleotide complementary DNA substrateELECTRON MICROSCOPY3.6491
137Z4I|1|ASpCas9 bound to 16-nucleotide complementary DNA substrateELECTRON MICROSCOPY3.1296
147Z4L|1|ASpCas9 bound to 18-nucleotide complementary DNA substrate in the checkpoint stateELECTRON MICROSCOPY2.5496
157Z4D|1|ACrystal structure of SpCas9 bound to a 10 nucleotide complementary DNA substrateX-RAY DIFFRACTION3.175
167Z4D|1|FCrystal structure of SpCas9 bound to a 10 nucleotide complementary DNA substrateX-RAY DIFFRACTION3.177
177S4U|1|BCryo-EM structure of Cas9 in complex with 12-14MM DNA substrate, 5 minute time-pointELECTRON MICROSCOPY3.5697
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