BGSU RNA Site //

Equivalence class NR_4.0_21280.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
15LZT|1|9 (rep)Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.Electron microscopy3.652016-11-30
25LZV|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.Electron microscopy3.352016-11-30
35LZX|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.Electron microscopy3.672016-11-30
45LZU|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian ribosomal termination complex with accommodated eRF1Electron microscopy3.752016-11-30
55LZY|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.Electron microscopy3.992016-11-30
65LZZ|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)Electron microscopy3.472016-11-30
75LZW|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.Electron microscopy3.532016-11-30
85LZS|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BElectron microscopy3.312016-11-30
93JAG|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonElectron microscopy3.652015-08-12
103JAH|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonElectron microscopy3.452015-08-12
113JAI|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonElectron microscopy3.652015-08-12
125FLX|1|1Small subunit ribosomal RNA18S RRNAOryctolagus cuniculusEukaryaRF01960Mammalian 40S HCV-IRES complexElectron microscopy3.92015-12-23
133JAN|1|S2Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the scanning state of the mammalian SRP-ribosome complexElectron microscopy3.752015-08-05
143JAJ|1|S2Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the engaged state of the mammalian SRP-ribosome complexElectron microscopy3.752015-08-05

Release history

Release2.1042.1052.1062.1072.1082.1092.1102.1112.1122.1132.1142.1152.1162.1172.1182.1192.1202.1212.1222.1232.1242.1252.1262.1272.1282.1292.1302.1312.1322.1332.1342.1352.1362.1372.1382.1392.1402.1412.1422.1432.1442.1452.1462.1472.1482.1492.1502.1512.1522.1532.1542.1552.1562.1572.158
Date2016-12-022016-12-092016-12-162016-12-232016-12-302017-01-062017-01-132017-01-202017-01-272017-02-032017-02-102017-02-172017-02-242017-03-032017-03-102017-03-172017-03-242017-03-312017-04-112017-04-152017-04-262017-04-292017-05-092017-05-152017-05-202017-05-272017-06-072017-06-112017-06-212017-06-242017-06-282017-07-042017-07-102017-07-152017-07-262017-07-312017-08-052017-08-122017-08-192017-08-262017-09-032017-09-092017-09-162017-09-232017-09-302017-10-072017-10-142017-10-212017-10-282017-11-032017-11-102017-11-172017-11-242017-12-012017-12-08

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_21280.1NR_4.0_03196.72.104(6) 3JAI|1|9, 3JAH|1|9, 5FLX|1|1, 3JAG|1|9, 3JAN|1|S2, 3JAJ|1|S2(8) 5LZS|1|9, 5LZZ|1|9, 5LZY|1|9, 5LZX|1|9, 5LZW|1|9, 5LZV|1|9, 5LZU|1|9, 5LZT|1|9(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_21280.1NR_4.0_21280.23.0(14) 5LZX|1|9, 3JAJ|1|S2, 5LZT|1|9, 5LZW|1|9, 3JAI|1|9, 5LZS|1|9, 5LZZ|1|9, 3JAH|1|9, 5FLX|1|1, 5LZV|1|9, 5LZY|1|9, 3JAG|1|9, 3JAN|1|S2, 5LZU|1|9(0) (4) 1VX2|1|2, 3J74|1|S2, 3J73|1|S2, 1VX5|1|2

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
13JAJ|1|S2Structure of the engaged state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.751742
23JAN|1|S2Structure of the scanning state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.751742
33JAH|1|9Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.451719
43JAG|1|9Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonELECTRON MICROSCOPY3.651719
53JAI|1|9Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonELECTRON MICROSCOPY3.651719
65LZS|1|9Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.311697
75LZT|1|9Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.ELECTRON MICROSCOPY3.651698
85LZV|1|9Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.351698
95LZU|1|9Structure of the mammalian ribosomal termination complex with accommodated eRF1ELECTRON MICROSCOPY3.751698
105LZW|1|9Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.ELECTRON MICROSCOPY3.531698
115LZX|1|9Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.ELECTRON MICROSCOPY3.671698
125LZZ|1|9Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.471698
135LZY|1|9Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.ELECTRON MICROSCOPY3.991698
145FLX|1|1Mammalian 40S HCV-IRES complexELECTRON MICROSCOPY3.91708