#PDBTitleRNA source organismCompoundsMethodResolutionDate
15LZT|1|9 (rep)Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.Oryctolagus cuniculusNascent chain, P-site tRNA, E-site tRNA, 28S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 18S ribosomal RNA, uL2, uS2, uL3, eS1, uL4, uS5, uL18, uS3, eL6, eS4, uL30, uS7, eL8, eS6, uL6, eS7, uL16, eS8, uL5, uS4, eS10, eL13, uS17, eL14, eS12, eL15, uS15, uL13, uS11, uL22, uS19, eL18, uS9, eL19, eS17, eL20, uS13, eL21, eS19, eL22, uS10, uL14, eS21, eL24, uS8, uL23, uS12, uL24, eS24, eL27, eS25, uL15, eS26, eL29, eS27, eL30, eS28, eL31, uS14, eL32, eS30, eL33, eS31, eL34, RACK1, uL29, mRNA (UGA stop codon), eL36, eRF1, eL37, eRF3a, eL38, eL39, eL40, eL41, eL42, eL43, eL28, uL10, uL11ELECTRON MICROSCOPY3.652016-11-30
25LZV|1|9Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.Oryctolagus cuniculusNascent chain, P-site tRNA, E-site tRNA, 28S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 18S ribosomal RNA, uL2, uS2, uL3, eS1, uL4, uS5, uL18, uS3, eL6, eS4, uL30, uS7, eL8, eS6, uL6, eS7, uL16, eS8, uL5, uS4, eS10, eL13, uS17, eL14, eS12, eL15, uS15, uL13, uS11, uL22, uS19, eL18, uS9, eL19, eS17, eL20, uS13, eL21, eS19, eL22, uS10, uL14, eS21, eL24, uS8, uL23, uS12, uL24, eS24, eL27, eS25, uL15, eS26, eL29, eS27, eL30, eS28, eL31, uS14, eL32, eS30, eL33, eS31, eL34, RACK1, uL29, mRNA (UGA stop codon), eL36, eRF1(AAQ), eL37, ABCE1, eL38, eL39, eL40, eL41, eL42, eL43, eL28, uL10, uL11ELECTRON MICROSCOPY3.352016-11-30
35LZX|1|9Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.Oryctolagus cuniculusNascent chain, P-site tRNA, E-site tRNA, 28S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 18S ribosomal RNA, uL2, uS2, Ul3, 40S ribosomal protein S3a, uL4, uS5, 60S ribosomal protein L5, uS3, 60S ribosomal protein L6, eS4, uL30, uS7, eL8, 40S ribosomal protein S6, uL6, eS7, Ribosomal protein L10 (Predicted), eS8, uL5, Ribosomal protein S9 (Predicted), eS10, eL13, uS17, eL14, 40S ribosomal protein S12, Ribosomal protein L15, uS15, uL13, uS11, uL22, uS19, eL18, uS9, eL19, eS17, eL20, uS13, eL21, eS19, eL22, uS10, uL14, eS21, eL24, uS8, uL23, uS12, uL24, eS24, 60S ribosomal protein L27, eS25, uL15, eS26, eL29, 40S ribosomal protein S27, eL30, eS28, eL31, uS14, eL32, eS30, eL33, eS31, eL34, RACK1, uL29, mRNA (UGA stop codon), 60S ribosomal protein L36, Protein pelota homolog, Ribosomal protein L37, HBS1-like protein, eL38, eL39, eL40, eL41, eL42, eL43, eL28, uL10, uL11ELECTRON MICROSCOPY3.672016-11-30
45LZU|1|9Structure of the mammalian ribosomal termination complex with accommodated eRF1Oryctolagus cuniculusP-site tRNA, E-site tRNA, 28S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 18S ribosomal RNA, uL2, uS2, uL3, 40S ribosomal protein S3a, uL4, uS5, 60S ribosomal protein L5, uS3, 60S ribosomal protein L6, 40S ribosomal protein S4, uL30, uS7, eL8, 40S ribosomal protein S6, uL6, eS7, uL16, 40S ribosomal protein S8, uL5, Ribosomal protein S9 (Predicted), eS10, eL13, uS17, eL14, 40S ribosomal protein S12, Ribosomal protein L15, uS15, uL13, uS11, uL22, uS19, eL18, uS9, eL19, eS17, eL20, uS13, eL21, eS19, eL22, uS10, uL14, eS21, eL24, uS8, uL23, uS12, uL24, eS24, 60S ribosomal protein L27, eS25, uL15, eS26, eL29, 40S ribosomal protein S27, eL30, eS28, eL31, uS14, eL32, eS30, eL33, eS31, eL34, RACK1, uL29, mRNA (UGA stop codon), 60S ribosomal protein L36, Eukaryotic peptide chain release factor subunit 1, Ribosomal protein L37, eL38, eL39, eL40, 60s ribosomal protein l41, eL42, eL43, eL28, uL10, uL11ELECTRON MICROSCOPY3.752016-11-30
55LZY|1|9Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.Oryctolagus cuniculustRNA, tRNA, 28S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 18S ribosomal RNA, uL2, uS2, uL3, 40S ribosomal protein S3a, uL4, uS5, 60S ribosomal protein L5, uS3, 60S ribosomal protein L6, eS4, uL30, uS7, eL8, 40S ribosomal protein S6, uL6, eS7, Ribosomal protein L10 (Predicted), eS8, uL5, Ribosomal protein S9 (Predicted), eS10, eL13, uS17, eL14, 40S ribosomal protein S12, Ribosomal protein L15, uS15, uL13, uS11, uL22, uS19, eL18, uS9, eL19, eS17, eL20, uS13, eL21, eS19, eL22, uS10, eL14, eS21, eL24, uS8, eL23, uS12, uL24, eS24, 60S ribosomal protein L27, eS25, uL15, eS26, eL29, 40S ribosomal protein S27, eL30, eS28, eL31, uS14, eL32, eS30, eL33, eS31, eL34, RACK1, uL29, mRNA (polyadenylated), 60S ribosomal protein L36, Protein pelota homolog, eL37, HBS1-like protein, eL38, eL39, eL40, eL41, eL42, eL43, eL28, uL10, uL11ELECTRON MICROSCOPY3.992016-11-30
65LZZ|1|9Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)Oryctolagus cuniculusNascent chain, P-site tRNA, E-site tRNA, 28S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 18S ribosomal RNA, uL2, uS2, uL3, 40S ribosomal protein S3a, uL4, uS5, 60S ribosomal protein L5, Uncharacterized protein, 60S ribosomal protein L6, eS4, Uncharacterized protein, uS7, 60S ribosomal protein L7a,eL8, 40S ribosomal protein S6, uL6, eS7, Ribosomal protein L10 (Predicted), 40S ribosomal protein S8, uL5, Ribosomal protein S9 (Predicted), Uncharacterized protein, eL13, Uncharacterized protein, eL14, 40S ribosomal protein S12, Ribosomal protein L15, uS15, uL13, uS11, uL22, uS19, eL18, uS9, eL19, eS17, eL20, uS13, eL21, eS19, eL22, uS10, uL14, eS21, eL24, uS8, uL23, uS12, uL24, 40S ribosomal protein S24, 60S ribosomal protein L27, eS25, uL15, eS26, eL29, 40S ribosomal protein S27, eL30, eS28, eL31, uS14, eL32, eS30, eL33, eS31, eL34, RACK1, uL29, mRNA, 60S ribosomal protein L36, Protein pelota homolog, Ribosomal protein L37, HBS1-like protein, eL38, eL39, eL40, eL41, eL42, eL43, eL28, uL10, uL11ELECTRON MICROSCOPY3.472016-11-30
75LZW|1|9Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.Oryctolagus cuniculusNascent chain, P-site tRNA, E-site tRNA, 28S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 18S ribosomal RNA, uL2, uS2, uL3, eS1, uL4, uS5, uL18, uS3, eL6, eS4, uL30, uS7, eL8, eS6, uL6, eS7, uL16, eS8, uL5, uS4, eS10, eL13, uS17, eL14, eS12, eL15, uS15, uL13, uS11, uL22, uS19, eL18, uS9, eL19, eS17, eL20, uS13, eL21, eS19, eL22, uS10, uL14, eS21, eL24, uS8, uL23, uS12, uL24, eS24, eL27, eS25, uL15, eS26, eL29, eS27, eL30, eS28, eL31, uS14, eL32, eS30, eL33, eS31, eL34, RACK1, uL29, mRNA (truncated), eL36, Pelota, eL37, Hbs1l, eL38, eL39, eL40, eL41, eL42, eL43, eL28, uL10, uL11ELECTRON MICROSCOPY3.532016-11-30
85LZS|1|9Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BOryctolagus cuniculustRNA, E-site tRNA, 28S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 18S ribosomal RNA, Uncharacterized protein, uS2, Uncharacterized protein, 40S ribosomal protein S3a, Uncharacterized protein,uL4, uS5, 60S ribosomal protein L5, Uncharacterized protein, 60S ribosomal protein L6, 40S ribosomal protein S4, Uncharacterized protein, Uncharacterized protein, eL8,Uncharacterized protein, 40S ribosomal protein S6, Uncharacterized protein, Uncharacterized protein, Ribosomal protein L10 (Predicted), 40S ribosomal protein S8, Uncharacterized protein, Ribosomal protein S9 (Predicted), Uncharacterized protein, eL13, Uncharacterized protein, Uncharacterized protein, 40S ribosomal protein S12, Ribosomal protein L15, Uncharacterized protein, uL13, uS11,Uncharacterized protein, Uncharacterized protein, Uncharacterized protein, eL18, Uncharacterized protein, eL19, Uncharacterized protein, eL20, Uncharacterized protein, Uncharacterized protein, Uncharacterized protein, eL22, Uncharacterized protein, Uncharacterized proELECTRON MICROSCOPY3.312016-11-30
93JAG|1|9Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonOryctolagus cuniculuspeptide, tRNA(Val), tRNA(Lys), 28S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 18S ribosomal RNA, uL2, uS2, uL3, eS1, uL4, uS5, uL18, uS3, eL6, eS4, uL30, uS7, eL8, eS6, uL6, eS7, uL16, eS8, uL5, uS4, eS10, eL13, uS17, eL14, eS12, eL15, uS15, uL13, uS11, uL22, uS19, eL18, uS9, eL19, eS17, eL20, uS13, eL21, eS19, eL22, uS10, uL14, eS21, eL24, uS8, uL23, uS12, uL24, eS24, eL27, eS25, uL15, eS26, eL29, eS27, eL30, eS28, eL31, uS14, eL32, eS30, eL33, eS31, eL34, RACK1, uL29, mRNA, eL36, eRF1, eL37, ABCE1, eL38, eL39, eL40, eL41, eL42, eL43, eL28, uL10, uL11ELECTRON MICROSCOPY3.652015-08-12
103JAH|1|9Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonOryctolagus cuniculuspeptide, tRNA(Val), tRNA(Lys), 28S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 18S ribosomal RNA, uL2, uS2, uL3, eS1, uL4, uS5, uL18, uS3, eL6, eS4, uL30, uS7, eL8, eS6, uL6, eS7, uL16, eS8, uL5, uS4, eS10, eL13, uS17, eL14, eS12, eL15, uS15, uL13, uS11, uL22, uS19, uL14, uS9, eL19, eS17, eL20, uS13, eL21, eS19, eL22, uS10, uL14, eS21, eL24, uS8, uL23, uS12, uL24, eS24, eL27, eS25, uL15, eS26, eL29, eS27, eL30, eS28, eL31, uS14, eL32, eS30, eL33, eS31, eL34, RACK1, uL29, mRNA, eL36, eRF1, eL37, ABCE1, eL38, eL39, eL40, eL41, eL42, eL43, eL28, uL10, uL11ELECTRON MICROSCOPY3.452015-08-12
113JAI|1|9Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonOryctolagus cuniculuspeptide, tRNA(Val), tRNA(Lys), 28S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 18S ribosomal RNA, uL2, uS2, uL3, eS1, uL4, uS5, uL18, uS3, eL6, eS4, uL30, uS7, eL8, eS6, uL6, eS7, uL16, eS8, uL5, uS4, eS10, eL13, uS17, eL14, eS12, eL15, uS15, uL13, uS11, uL22, uS19, eL18, uS9, eL19, eS17, eL20, uS13, eL21, eS19, eL22, uS10, uL14, eS21, eL24, uS8, uL23, uS12, uL24, eS24, eL27, eS25, uL15, eS26, eL29, eS27, eL30, eS28, eL31, uS14, eL32, eS30, eL33, eS31, eL34, RACK1, uL29, mRNA, eL36, eRF1, eL37, ABCE1, eL38, eL39, eL40, eL41, eL42, eL43, eL28, uL10, uL11ELECTRON MICROSCOPY3.652015-08-12
125FLX|1|1Mammalian 40S HCV-IRES complexOryctolagus cuniculus18S RRNA, 40S RIBOSOMAL PROTEIN SA, 40S RIBOSOMAL PROTEIN S3A, 40S RIBOSOMAL PROTEIN S2, 40S RIBOSOMAL PROTEIN S3, 40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1, 40S RIBOSOMAL PROTEIN S5, 40S RIBOSOMAL PROTEIN S6, 40S RIBOSOMAL PROTEIN S7, 40S RIBOSOMAL PROTEIN S8, 40S RIBOSOMAL PROTEIN S9, 40S RIBOSOMAL PROTEIN S10, 40S RIBOSOMAL PROTEIN S11, 40S RIBOSOMAL PROTEIN S12, 40S RIBOSOMAL PROTEIN S13, 40S RIBOSOMAL PROTEIN S14, 40S RIBOSOMAL PROTEIN S15, 40S RIBOSOMAL PROTEIN S16, 40S RIBOSOMAL PROTEIN S17, 40S RIBOSOMAL PROTEIN S18, 40S RIBOSOMAL PROTEIN S19, 40S RIBOSOMAL PROTEIN S20, 40S RIBOSOMAL PROTEIN S21, 40S RIBOSOMAL PROTEIN S15A, 40S RIBOSOMAL PROTEIN S23, 40S RIBOSOMAL PROTEIN S24, 40S RIBOSOMAL PROTEIN S25, 40S RIBOSOMAL PROTEIN S26, 40S RIBOSOMAL PROTEIN S27, 40S RIBOSOMAL PROTEIN S28, 40S RIBOSOMAL PROTEIN S29, 40S RIBOSOMAL PROTEIN S30, UBIQUITIN-40S RIBOSOMAL PROTEIN S27A, GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-2-LIKE 1, HCV-IRESELECTRON MICROSCOPY3.92015-12-23
133JAN|1|S2Structure of the scanning state of the mammalian SRP-ribosome complexOryctolagus cuniculusVal tRNA, SRP 7S RNA, 28S ribosomal RNA, SRP68, 5S ribosomal RNA, 5.8S ribosomal RNA, SRP19, Ribosomal protein uL2, Ribosomal protein uL3, Ribosomal protein uL4, Ribosomal protein uL18, Ribosomal protein eL6, Ribosomal protein uL30, Ribosomal protein eL8, Ribosomal protein uL6, Ribosomal protein uL16, Ribosomal protein uL5, Ribosomal protein uL11, Ribosomal protein eL13, Ribosomal protein eL14, Ribosomal protein eL15, Ribosomal protein uL13, Ribosomal protein uL22, Ribosomal protein eL18, Ribosomal protein eL19, Ribosomal protein eL20, SRP9, 18S ribosomal RNA, SRP14, Ribosomal protein uS2, Ribosomal protein eS1, Ribosomal protein uS5, Ribosomal protein uS3, Ribosomal protein eS4, Ribosomal protein uS7, Ribosomal protein eS6, Ribosomal protein eS7, Ribosomal protein eS8, Ribosomal protein uS4, Ribosomal protein eS10, Ribosomal protein uS17, Ribosomal protein eS12, Ribosomal protein uS15, Ribosomal protein uS11, Ribosomal protein uS19, Ribosomal protein uS9, Ribosomal protein eS17, Ribosomal protein uS13, RibosELECTRON MICROSCOPY3.752015-08-05
143JAJ|1|S2Structure of the engaged state of the mammalian SRP-ribosome complexOryctolagus cuniculusNascent chain, Val tRNA, SRP 7S RNA, 28S ribosomal RNA, SRP68, 5S ribosomal RNA, 5.8S ribosomal RNA, SRP19, Ribosomal protein uL2, Ribosomal protein uL3, Ribosomal protein uL4, Ribosomal protein uL18, Ribosomal protein eL6, Ribosomal protein uL30, Ribosomal protein eL8, Ribosomal protein uL6, Ribosomal protein uL16, Ribosomal protein uL5, Ribosomal protein uL11, Ribosomal protein eL13, Ribosomal protein eL14, Ribosomal protein eL15, Ribosomal protein uL13, Ribosomal protein uL22, Ribosomal protein eL18, Ribosomal protein eL19, Ribosomal protein eL20, SRP9, 18S ribosomal RNA, SRP14, Ribosomal protein uS2, Ribosomal protein eS1, Ribosomal protein uS5, Ribosomal protein uS3, Ribosomal protein eS4, Ribosomal protein uS7, Ribosomal protein eS6, Ribosomal protein eS7, Ribosomal protein eS8, Ribosomal protein uS4, Ribosomal protein eS10, Ribosomal protein uS17, Ribosomal protein eS12, Ribosomal protein uS15, Ribosomal protein uS11, Ribosomal protein uS19, Ribosomal protein uS9, Ribosomal protein eS17, Ribosomal protELECTRON MICROSCOPY3.752015-08-05

Release history

Release2.1042.1052.1062.1072.1082.1092.1102.1112.1122.1132.1142.1152.1162.1172.1182.1192.1202.1212.1222.1232.1242.1252.1262.1272.1282.1292.1302.1312.1322.1332.1342.1352.1362.1372.1382.1392.1402.1412.1422.1432.1442.1452.146
Date2016-12-022016-12-092016-12-162016-12-232016-12-302017-01-062017-01-132017-01-202017-01-272017-02-032017-02-102017-02-172017-02-242017-03-032017-03-102017-03-172017-03-242017-03-312017-04-112017-04-152017-04-262017-04-292017-05-092017-05-152017-05-202017-05-272017-06-072017-06-112017-06-212017-06-242017-06-282017-07-042017-07-102017-07-152017-07-262017-07-312017-08-052017-08-122017-08-192017-08-262017-09-032017-09-092017-09-16

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_21280.1NR_4.0_03196.72.104(6) 3JAJ|1|S2, 3JAI|1|9, 5FLX|1|1, 3JAH|1|9, 3JAN|1|S2, 3JAG|1|9(8) 5LZW|1|9, 5LZV|1|9, 5LZU|1|9, 5LZT|1|9, 5LZS|1|9, 5LZZ|1|9, 5LZY|1|9, 5LZX|1|9(0)

Children

This classDescendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15FLX|1|1Mammalian 40S HCV-IRES complexELECTRON MICROSCOPY3.91708
25LZY|1|9Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.ELECTRON MICROSCOPY3.991698
35LZZ|1|9Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.471698
45LZX|1|9Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.ELECTRON MICROSCOPY3.671698
55LZW|1|9Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.ELECTRON MICROSCOPY3.531698
65LZU|1|9Structure of the mammalian ribosomal termination complex with accommodated eRF1ELECTRON MICROSCOPY3.751698
75LZV|1|9Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.351698
85LZT|1|9Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.ELECTRON MICROSCOPY3.651698
95LZS|1|9Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.311697
103JAI|1|9Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonELECTRON MICROSCOPY3.651719
113JAG|1|9Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonELECTRON MICROSCOPY3.651719
123JAH|1|9Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.451719
133JAN|1|S2Structure of the scanning state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.751742
143JAJ|1|S2Structure of the engaged state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.751742