Equivalence class NR_4.0_26052.5 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5NEW|1|H (rep) | RNA (5'-R(P*AP*AP*AP*AP*AP*A)-3') | Escherichia coli | Bacteria | RNA-RNA base stacking in the crystal structure of an Hfq6:RNA dimer | X-ray diffraction | 2.51 | 2017-10-04 | ||
| 2 | 6HYU|1|B | RNA (5'-R(*AP*AP*AP*AP*AP*A)-3') | synthetic construct | Synthetic | Crystal structure of DHX8 helicase bound to single stranded poly-adenine RNA | X-ray diffraction | 3.22 | 2019-08-28 | ||
| 3 | 6NUT|1|D | RNA (5'-R(P*AP*AP*AP*AP*AP*A)-3') | Homo sapiens | Eukarya | Ebola virus nucleoprotein - RNA complex | Electron microscopy | 3.1 | 2019-05-01 | ||
| 4 | 6H5Q|1|R | RNA (5'-R(*AP*AP*AP*AP*AP*A)-3') | synthetic construct | Synthetic | Cryo-EM structure of in vitro assembled Measles virus N into nucleocapsid-like particles (NCLPs) bound to polyA RNA hexamers. | Electron microscopy | 3.3 | 2019-03-13 |
Release history
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_26052.5 | NR_4.0_56199.1 | 3.98 | (1) 5NEW|1|H | (3) 6HYU|1|B, 6H5Q|1|R, 6NUT|1|D | (0) |
| NR_4.0_26052.5 | NR_4.0_60226.1 | 3.98 | (1) 6H5Q|1|R | (3) 5NEW|1|H, 6NUT|1|D, 6HYU|1|B | (0) |
| NR_4.0_26052.5 | NR_4.0_61996.1 | 3.98 | (1) 6NUT|1|D | (3) 6HYU|1|B, 6H5Q|1|R, 5NEW|1|H | (0) |
| NR_4.0_26052.5 | NR_4.0_68616.1 | 3.98 | (1) 6HYU|1|B | (3) 6H5Q|1|R, 5NEW|1|H, 6NUT|1|D | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6H5Q|1|R | Cryo-EM structure of in vitro assembled Measles virus N into nucleocapsid-like particles (NCLPs) bound to polyA RNA hexamers. | ELECTRON MICROSCOPY | 3.3 | 6 |
| 2 | 6NUT|1|D | Ebola virus nucleoprotein - RNA complex | ELECTRON MICROSCOPY | 3.1 | 6 |
| 3 | 6HYU|1|B | Crystal structure of DHX8 helicase bound to single stranded poly-adenine RNA | X-RAY DIFFRACTION | 3.22 | 6 |
| 4 | 5NEW|1|H | RNA-RNA base stacking in the crystal structure of an Hfq6:RNA dimer | X-RAY DIFFRACTION | 2.51 | 6 |