BGSU RNA Site //

Equivalence class NR_4.0_33014.3 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
16LQP|1|SA+ 6LQP|1|5A+ 6LQP|1|3A (rep)Small subunit ribosomal RNA + U3 small nucleolar RNA18S pre-rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960 + RF01846Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)ELECTRON MICROSCOPY3.22020-09-16
26KE6|1|SA+ 6KE6|1|5A+ 6KE6|1|3ASmall subunit ribosomal RNA + U3 small nucleolar RNA18S rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960 + RF018463.4 angstrom cryo-EM structure of yeast 90S small subunit preribosomeELECTRON MICROSCOPY3.42020-08-05
36ZQG|1|D3Small subunit ribosomal RNA18S rRNA, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-CELECTRON MICROSCOPY3.52020-09-23
46LQU|1|SA+ 6LQU|1|5A+ 6LQU|1|3ASmall subunit ribosomal RNA + U3 small nucleolar RNA18S pre-rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960 + RF01846Cryo-EM structure of 90S small subunit preribosomes in transition states (State A1)ELECTRON MICROSCOPY3.72020-09-16
56ZQD|1|D3Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1ELECTRON MICROSCOPY3.82020-09-23
67AJU|1|D3Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiae S288CEukaryaRF01960Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)ELECTRON MICROSCOPY3.82020-12-30
76LQS|1|SASmall subunit ribosomal RNA18S pre-rRNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)ELECTRON MICROSCOPY3.82020-09-16
86ZQB|1|D3+ 6ZQB|1|D2+ 6ZQB|1|D4Small subunit ribosomal RNA + U3 small nucleolar RNA18S rRNA, 5ETS RNA, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960 + RF01846Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2ELECTRON MICROSCOPY3.92020-09-23
96ZQC|1|D3Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1ELECTRON MICROSCOPY3.82020-09-23
105WLC|1|L1+ 5WLC|1|L0+ 5WLC|1|L2Small subunit ribosomal RNA + U3 small nucleolar RNA18S pre-rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960 + RF01846The complete structure of the small subunit processomeELECTRON MICROSCOPY3.82017-09-27

Release history

Release3.1593.1603.1613.1623.1633.1643.1653.1663.1673.1683.1693.1703.1713.1723.1733.1743.1753.1763.1773.1783.1793.1803.1813.1823.1833.1843.1853.1863.1873.1883.1893.1903.1913.1923.1933.1943.1953.1963.1973.198
Date2020-12-302021-01-062021-01-132021-01-202021-01-272021-02-032021-02-102021-02-172021-02-242021-03-032021-03-102021-03-172021-03-242021-03-312021-04-072021-04-142021-04-212021-04-282021-05-052021-05-122021-05-192021-05-262021-06-022021-06-092021-06-162021-06-232021-06-302021-07-072021-07-142021-07-212021-07-282021-08-042021-08-112021-08-182021-08-252021-09-012021-09-082021-09-152021-09-222021-09-29

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_33014.3NR_4.0_33014.23.159(9) 6ZQG|1|D3, 6ZQD|1|D3, 6ZQC|1|D3, 6ZQB|1|D3+6ZQB|1|D2+6ZQB|1|D4, 6LQU|1|SA+6LQU|1|5A+6LQU|1|3A, 6LQS|1|SA, 6LQP|1|SA+6LQP|1|5A+6LQP|1|3A, 6KE6|1|SA+6KE6|1|5A+6KE6|1|3A, 5WLC|1|L1+5WLC|1|L0+5WLC|1|L2(1) 7AJU|1|D3(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_33014.3NR_4.0_33014.43.199(10) 7AJU|1|D3, 6ZQG|1|D3, 6ZQD|1|D3, 6ZQC|1|D3, 6ZQB|1|D3+6ZQB|1|D2+6ZQB|1|D4, 6LQU|1|SA+6LQU|1|5A+6LQU|1|3A, 6LQS|1|SA, 6LQP|1|SA+6LQP|1|5A+6LQP|1|3A, 6KE6|1|SA+6KE6|1|5A+6KE6|1|3A, 5WLC|1|L1+5WLC|1|L0+5WLC|1|L2(0) (1) 7D4I|1|SA

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15WLC|1|L1+5WLC|1|L0+5WLC|1|L2The complete structure of the small subunit processomeELECTRON MICROSCOPY3.81025
26LQU|1|SA+6LQU|1|5A+6LQU|1|3ACryo-EM structure of 90S small subunit preribosomes in transition states (State A1)ELECTRON MICROSCOPY3.71242
36LQP|1|SA+6LQP|1|5A+6LQP|1|3ACryo-EM structure of 90S small subunit preribosomes in transition states (State A)ELECTRON MICROSCOPY3.21325
46KE6|1|SA+6KE6|1|5A+6KE6|1|3A3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosomeELECTRON MICROSCOPY3.41310
56ZQB|1|D3+6ZQB|1|D2+6ZQB|1|D4Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2ELECTRON MICROSCOPY3.91198
66ZQC|1|D3Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1ELECTRON MICROSCOPY3.81327
76LQS|1|SACryo-EM structure of 90S small subunit preribosomes in transition states (State D)ELECTRON MICROSCOPY3.81249
87AJU|1|D3Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)ELECTRON MICROSCOPY3.81409
96ZQD|1|D3Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1ELECTRON MICROSCOPY3.81409
106ZQG|1|D3Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-CELECTRON MICROSCOPY3.51387