Equivalence class NR_4.0_33912.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3S17|1|R (rep) | RNA (5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*G)-3') | RNA Polymerase II Initiation Complex with a 9-nt RNA | X-ray diffraction | 3.2 | 2011-08-10 | ||||
| 2 | 6UPY|1|R | RNA | synthetic construct | Synthetic | RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 2E | X-ray diffraction | 3.4 | 2020-06-10 | ||
| 3 | 6UQ2|1|R | RNA | synthetic construct | Synthetic | RNA polymerase II elongation complex with dG in state 1 | X-ray diffraction | 3.2 | 2020-06-10 | ||
| 4 | 6UPX|1|R | RNA | synthetic construct | Synthetic | RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 1 | X-ray diffraction | 3.4 | 2020-06-10 | ||
| 5 | 2E2J|1|R | 5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*G)-3' | synthetic construct | Synthetic | RNA polymerase II elongation complex in 5 mM Mg+2 with GMPCPP | X-ray diffraction | 3.5 | 2006-12-12 | ||
| 6 | 6O6C|1|K | RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*G)-3') | Saccharomyces cerevisiae | Eukarya | RNA polymerase II elongation complex arrested at a CPD lesion | Electron microscopy | 3.1 | 2019-06-26 |
Release history
| Release | 3.130 | 3.131 | 3.132 | 3.133 | 3.134 | 3.135 | 3.136 | 3.137 | 3.138 | 3.139 | 3.140 | 3.141 | 3.142 | 3.143 | 3.144 | 3.145 | 3.146 | 3.147 | 3.148 | 3.149 | 3.150 | 3.151 | 3.152 | 3.153 | 3.154 | 3.155 | 3.156 | 3.157 | 3.158 | 3.159 | 3.160 | 3.161 | 3.162 | 3.163 | 3.164 | 3.165 | 3.166 | 3.167 | 3.168 | 3.169 | 3.170 | 3.171 | 3.172 | 3.173 | 3.174 | 3.175 | 3.176 | 3.177 | 3.178 | 3.179 | 3.180 | 3.181 | 3.182 | 3.183 | 3.184 | 3.185 | 3.186 | 3.187 | 3.188 | 3.189 | 3.190 | 3.191 | 3.192 | 3.193 | 3.194 | 3.195 | 3.196 | 3.197 | 3.198 | 3.199 | 3.200 | 3.201 | 3.202 | 3.203 | 3.204 | 3.205 | 3.206 | 3.207 | 3.208 | 3.209 | 3.210 | 3.211 | 3.212 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-06-10 | 2020-06-17 | 2020-06-24 | 2020-07-01 | 2020-07-08 | 2020-07-15 | 2020-07-22 | 2020-07-29 | 2020-08-05 | 2020-08-12 | 2020-08-19 | 2020-08-26 | 2020-09-02 | 2020-09-09 | 2020-09-16 | 2020-09-23 | 2020-09-30 | 2020-10-07 | 2020-10-14 | 2020-10-21 | 2020-10-28 | 2020-11-04 | 2020-11-11 | 2020-11-18 | 2020-11-25 | 2020-12-02 | 2020-12-09 | 2020-12-16 | 2020-12-23 | 2020-12-30 | 2021-01-06 | 2021-01-13 | 2021-01-20 | 2021-01-27 | 2021-02-03 | 2021-02-10 | 2021-02-17 | 2021-02-24 | 2021-03-03 | 2021-03-10 | 2021-03-17 | 2021-03-24 | 2021-03-31 | 2021-04-07 | 2021-04-14 | 2021-04-21 | 2021-04-28 | 2021-05-05 | 2021-05-12 | 2021-05-19 | 2021-05-26 | 2021-06-02 | 2021-06-09 | 2021-06-16 | 2021-06-23 | 2021-06-30 | 2021-07-07 | 2021-07-14 | 2021-07-21 | 2021-07-28 | 2021-08-04 | 2021-08-11 | 2021-08-18 | 2021-08-25 | 2021-09-01 | 2021-09-08 | 2021-09-15 | 2021-09-22 | 2021-09-29 | 2021-10-06 | 2021-10-13 | 2021-10-20 | 2021-10-27 | 2021-11-03 | 2021-11-10 | 2021-11-17 | 2021-11-24 | 2021-12-01 | 2021-12-08 | 2021-12-15 | 2021-12-22 | 2021-12-29 | 2022-01-05 |
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 2E2J|1|R | RNA polymerase II elongation complex in 5 mM Mg+2 with GMPCPP | X-RAY DIFFRACTION | 3.5 | 9 |
| 2 | 6UPY|1|R | RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 2E | X-RAY DIFFRACTION | 3.4 | 9 |
| 3 | 6UPX|1|R | RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 1 | X-RAY DIFFRACTION | 3.4 | 9 |
| 4 | 3S17|1|R | RNA Polymerase II Initiation Complex with a 9-nt RNA | X-RAY DIFFRACTION | 3.2 | 9 |
| 5 | 6UQ2|1|R | RNA polymerase II elongation complex with dG in state 1 | X-RAY DIFFRACTION | 3.2 | 9 |
| 6 | 6O6C|1|K | RNA polymerase II elongation complex arrested at a CPD lesion | ELECTRON MICROSCOPY | 3.1 | 9 |