Equivalence class NR_4.0_33912.1 Current
| # | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
|---|---|---|---|---|---|---|---|
| 1 | 3S17|1|R (rep) | RNA (5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*G)-3') | RNA Polymerase II Initiation Complex with a 9-nt RNA | X-RAY DIFFRACTION | 3.2 | 2011-08-10 | |
| 2 | 6UPY|1|R | RNA | synthetic construct | RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 2E | X-RAY DIFFRACTION | 3.4 | 2020-06-10 |
| 3 | 6UQ2|1|R | RNA | synthetic construct | RNA polymerase II elongation complex with dG in state 1 | X-RAY DIFFRACTION | 3.2 | 2020-06-10 |
| 4 | 6UPX|1|R | RNA | synthetic construct | RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 1 | X-RAY DIFFRACTION | 3.4 | 2020-06-10 |
| 5 | 2E2J|1|R | 5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*G)-3' | synthetic construct | RNA polymerase II elongation complex in 5 mM Mg+2 with GMPCPP | X-RAY DIFFRACTION | 3.5 | 2006-12-12 |
| 6 | 6O6C|1|K | RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*G)-3') | Saccharomyces cerevisiae | RNA polymerase II elongation complex arrested at a CPD lesion | ELECTRON MICROSCOPY | 3.1 | 2019-06-26 |
Release history
| Release | 3.130 |
|---|---|
| Date | 2020-06-10 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 2E2J|1|R | RNA polymerase II elongation complex in 5 mM Mg+2 with GMPCPP | X-RAY DIFFRACTION | 3.5 | 9 |
| 2 | 6UPY|1|R | RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 2E | X-RAY DIFFRACTION | 3.4 | 9 |
| 3 | 6UPX|1|R | RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 1 | X-RAY DIFFRACTION | 3.4 | 9 |
| 4 | 3S17|1|R | RNA Polymerase II Initiation Complex with a 9-nt RNA | X-RAY DIFFRACTION | 3.2 | 9 |
| 5 | 6UQ2|1|R | RNA polymerase II elongation complex with dG in state 1 | X-RAY DIFFRACTION | 3.2 | 9 |
| 6 | 6O6C|1|K | RNA polymerase II elongation complex arrested at a CPD lesion | ELECTRON MICROSCOPY | 3.1 | 9 |