#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14FAU|1|A (rep)Group II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exonX-ray diffraction2.872012-11-14
24FAW|1|AGroup II catalytic intron D1-D4-1Group IIC intron, 5'-R(*A*UP*UP*UP*AP*UP*UP*A)-3'Oceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragmentX-ray diffraction2.72012-11-14
34Y1O|1|AGroup II catalytic intron D1-D4-3group II intron, domain 1Oceanobacillus iheyensisBacteriaRF02001Oceanobacillus iheyensis group II intron domain 1X-ray diffraction2.952015-10-14
44Y1N|1|AGroup II catalytic intron D1-D4-3group II intron, domain 1Oceanobacillus iheyensisBacteriaRF02001Oceanobacillus iheyensis group II intron domain 1 with iridium hexamineX-ray diffraction32015-10-14
53G78|1|AGroup II catalytic intron D1-D4-1Group II intron, Ligated EXON productOceanobacillus iheyensisBacteriaRF01998Insight into group II intron catalysis from revised crystal structureX-ray diffraction2.82010-02-16
63IGI|1|AGroup IIC intron, 5'-R(*CP*GP*CP*UP*CP*UP*AP*CP*UP*CP*UP*AP*U)-3'Tertiary Architecture of the Oceanobacillus Iheyensis Group II IntronX-ray diffraction3.122009-12-22
74Y1N|1|BGroup II catalytic intron D1-D4-3group II intron, domain 1Oceanobacillus iheyensisBacteriaRF02001Oceanobacillus iheyensis group II intron domain 1 with iridium hexamineX-ray diffraction32015-10-14
84E8Q|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+X-ray diffraction2.842012-11-14
94E8N|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of NH4+ and Mg2+X-ray diffraction2.962012-11-14
104E8K|1|AGroup II catalytic intron D1-D4-1Group IIC intron, 5'-R(*CP*G*AP*UP*UP*UP*AP*UP*UP*A)-3'Oceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and a non-hydrolyzed oligonucleotide substrateX-ray diffraction3.032012-11-14
114FAR|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exonX-ray diffraction2.862012-11-14
124Y1O|1|BGroup II catalytic intron D1-D4-3group II intron, domain 1Oceanobacillus iheyensisBacteriaRF02001Oceanobacillus iheyensis group II intron domain 1X-ray diffraction2.952015-10-14
134E8T|1|AGroup II catalytic intron D1-D4-1Group IIC intron, 5'-R(*AP*UP*UP*UP*AP*UP*UP*A)-3'Oceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and an oligonucleotide fragment substrate (low energy dataset)X-ray diffraction3.342012-11-14
144FB0|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron C377G mutant in a ligand-free state in the presence of K+ and Mg2+X-ray diffraction3.222012-11-14
154E8P|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Rb+ and Mg2+X-ray diffraction3.282012-11-14
164FAQ|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and 5'-exonX-ray diffraction3.112012-11-14
173BWP|1|AGroup IIC intronCrystal structure of a self-spliced group II intronX-ray diffraction3.12008-04-15
184E8R|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Cs+ and Mg2+X-ray diffraction3.362012-11-14
194DS6|1|AGroup II catalytic intron D1-D4-1Mutant Group IIC IntronOceanobacillus iheyensisBacteriaRF01998Crystal structure of a group II intron in the pre-catalytic stateX-ray diffraction3.642012-04-18
204E8M|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Mg2+X-ray diffraction3.52012-11-14
213EOH|1|AGroup IIC intron, 5'-R(*UP*UP*AP*UP*UP*A)-3'Refined group II intron structureX-ray diffraction3.122008-10-28
224FAX|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Na+ and Mg2+X-ray diffraction3.12012-11-14
233EOG|1|AGroup IIC intron, 5'-R(*UP*UP*AP*UP*UP*A)-3'Co-crystallization showing exon recognition by a group II intronX-ray diffraction3.392008-10-28
244E8V|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Ba2+X-ray diffraction3.992012-11-14

Release history

Release2.452.462.472.482.492.502.512.522.532.542.552.562.572.582.592.602.612.622.632.642.652.662.672.682.692.702.712.722.732.742.752.762.772.782.792.802.812.822.832.842.852.862.872.882.892.902.912.922.932.942.952.962.972.982.992.1002.1012.1022.1032.1042.105
Date2015-10-162015-10-232015-10-302015-11-062015-11-132015-11-202015-11-272015-12-042015-12-112015-12-182015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-192016-02-262016-03-042016-03-112016-03-182016-03-252016-04-012016-04-082016-04-152016-04-222016-04-292016-05-062016-05-132016-05-202016-05-272016-06-032016-06-102016-06-172016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-262016-09-022016-09-092016-09-162016-09-232016-09-302016-10-072016-10-142016-10-212016-10-282016-11-042016-11-112016-11-182016-11-252016-12-022016-12-09

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14FAX|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Na+ and Mg2+X-RAY DIFFRACTION3.1392
24E8R|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Cs+ and Mg2+X-RAY DIFFRACTION3.36393
34E8P|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Rb+ and Mg2+X-RAY DIFFRACTION3.28393
44E8Q|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+X-RAY DIFFRACTION2.84393
54E8N|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of NH4+ and Mg2+X-RAY DIFFRACTION2.96393
64FB0|1|AStructure of Oceanobacillus iheyensis group II intron C377G mutant in a ligand-free state in the presence of K+ and Mg2+X-RAY DIFFRACTION3.22393
74E8M|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Mg2+X-RAY DIFFRACTION3.5394
84FAW|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragmentX-RAY DIFFRACTION2.7390
94FAR|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exonX-RAY DIFFRACTION2.86390
104FAU|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exonX-RAY DIFFRACTION2.87395
113G78|1|AInsight into group II intron catalysis from revised crystal structureX-RAY DIFFRACTION2.8389
123IGI|1|ATertiary Architecture of the Oceanobacillus Iheyensis Group II IntronX-RAY DIFFRACTION3.12389
134E8T|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and an oligonucleotide fragment substrate (low energy dataset)X-RAY DIFFRACTION3.34388
144E8K|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and a non-hydrolyzed oligonucleotide substrateX-RAY DIFFRACTION3.03388
154FAQ|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and 5'-exonX-RAY DIFFRACTION3.11396
164E8V|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Ba2+X-RAY DIFFRACTION3.99389
174DS6|1|ACrystal structure of a group II intron in the pre-catalytic stateX-RAY DIFFRACTION3.64393
183BWP|1|ACrystal structure of a self-spliced group II intronX-RAY DIFFRACTION3.1356
193EOH|1|ARefined group II intron structureX-RAY DIFFRACTION3.12381
203EOG|1|ACo-crystallization showing exon recognition by a group II intronX-RAY DIFFRACTION3.39388
214Y1O|1|BOceanobacillus iheyensis group II intron domain 1X-RAY DIFFRACTION2.95256
224Y1N|1|AOceanobacillus iheyensis group II intron domain 1 with iridium hexamineX-RAY DIFFRACTION3249
234Y1O|1|AOceanobacillus iheyensis group II intron domain 1X-RAY DIFFRACTION2.95258
244Y1N|1|BOceanobacillus iheyensis group II intron domain 1 with iridium hexamineX-RAY DIFFRACTION3259
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