NR_4.0_35133.2

Members (13)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Domain	Rfam	Title	Method	Å	Date
1	2Z75\|1\|B (rep)	glmS glucosamine-6-phosphate activated ribozyme	glmS ribozyme RNA	Caldanaerobacter subterraneus	Bacteria	RF00234	T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate	X-ray diffraction	1.7	2007-09-04
2	2GCV\|1\|B	glmS glucosamine-6-phosphate activated ribozyme	glmS ribozyme product oligonucleotide, glmS ribozyme RNA			RF00234	Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme	X-ray diffraction	2.1	2006-09-26
3	2Z74\|1\|B	glmS glucosamine-6-phosphate activated ribozyme	glmS ribozyme RNA			RF00234	T. tengcongensis glmS ribozyme bound to glucose-6-phosphate	X-ray diffraction	2.2	2007-09-04
4	2H0X\|1\|B	glmS glucosamine-6-phosphate activated ribozyme	glmS ribozyme amino RNA inhibitor, glmS ribozyme RNA			RF00234	Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme	X-ray diffraction	2.3	2006-09-26
5	2H0W\|1\|B	glmS glucosamine-6-phosphate activated ribozyme	glmS ribozyme product oligonucleotide, glmS ribozyme RNA			RF00234	Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme	X-ray diffraction	2.4	2006-09-26
6	2GCS\|1\|B	glmS glucosamine-6-phosphate activated ribozyme	glmS ribozyme amino RNA inhibitor, glmS ribozyme RNA			RF00234	Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme	X-ray diffraction	2.1	2006-09-26
7	3B4B\|1\|B	glmS glucosamine-6-phosphate activated ribozyme	glmS ribozyme substrate with 2'5'-phosphodiester linkage, glmS ribozyme RNA	Caldanaerobacter subterraneus	Bacteria	RF00234	T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage	X-ray diffraction	2.7	2007-12-11
8	2HO6\|1\|B	glmS glucosamine-6-phosphate activated ribozyme	glmS ribozyme substrate RNA, glmS ribozyme RNA			RF00234	Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme	X-ray diffraction	2.8	2006-09-26
9	2HO7\|1\|B	glmS glucosamine-6-phosphate activated ribozyme	glmS ribozyme substrate RNA, glmS ribozyme RNA			RF00234	Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate	X-ray diffraction	2.9	2006-09-26
10	3B4A\|1\|B	glmS glucosamine-6-phosphate activated ribozyme	glmS ribozyme substrate RNA, glmS ribozyme RNA	Caldanaerobacter subterraneus	Bacteria	RF00234	T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate	X-ray diffraction	2.7	2007-12-11
11	4MEG\|1\|B	glmS glucosamine-6-phosphate activated ribozyme	glmS triple mutant ribozyme, (121-MER) ribozyme			RF00234	In vitro evolved glmS ribozyme triple mutant, magnesium ion complex	X-ray diffraction	3.1	2013-10-16
12	3B4C\|1\|B	glmS glucosamine-6-phosphate activated ribozyme	glmS ribozyme substrate with a 2'5'-phosphodiester linkage, glmS ribozyme RNA	Caldanaerobacter subterraneus	Bacteria	RF00234	T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage	X-ray diffraction	3	2007-12-11
13	4MEH\|1\|B	glmS glucosamine-6-phosphate activated ribozyme	glmS triple mutant ribozyme, (122-MER) ribozyme			RF00234	In vitro evolved glmS ribozyme triple mutant, calcium ion complex	X-ray diffraction	3.12	2013-10-16

Release history

Release	3.0	3.1	3.2	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.11	3.12	3.13	3.14	3.15	3.16	3.17	3.18	3.19	3.20	3.21	3.22	3.23	3.24	3.25	3.26	3.27	3.28	3.29	3.30	3.31	3.32	3.33	3.34	3.35	3.36	3.37	3.38	3.39	3.40	3.41	3.42	3.43	3.44	3.45	3.46	3.47	3.48	3.49	3.50
Date	2017-12-15	2017-12-22	2017-12-29	2018-01-05	2018-01-12	2018-01-19	2018-01-26	2018-02-02	2018-02-09	2018-02-16	2018-02-23	2018-03-01	2018-03-08	2018-03-15	2018-03-22	2018-03-29	2018-04-06	2018-04-13	2018-04-20	2018-04-27	2018-05-04	2018-05-11	2018-05-18	2018-05-25	2018-06-01	2018-06-08	2018-06-15	2018-06-22	2018-06-29	2018-07-06	2018-07-13	2018-07-20	2018-07-27	2018-08-03	2018-08-10	2018-08-17	2018-08-24	2018-08-31	2018-09-07	2018-09-14	2018-09-21	2018-09-28	2018-10-05	2018-10-12	2018-10-19	2018-10-26	2018-11-02	2018-11-09	2018-11-16	2018-11-23	2018-11-30

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_4.0_35133.2	NR_4.0_35133.1	3.0	(13) 2GCS\|1\|B, 4MEG\|1\|B, 3B4A\|1\|B, 2Z74\|1\|B, 2H0X\|1\|B, 2GCV\|1\|B, 4MEH\|1\|B, 3B4B\|1\|B, 2Z75\|1\|B, 2HO6\|1\|B, 2H0W\|1\|B, 3B4C\|1\|B, 2HO7\|1\|B	(0)	(2) 2H0S\|1\|B, 2H0Z\|1\|B

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_4.0_35133.2	NR_4.0_35133.3	3.51	(13) 4MEG\|1\|B, 2H0X\|1\|B, 3B4C\|1\|B, 2H0W\|1\|B, 3B4B\|1\|B, 2GCV\|1\|B, 3B4A\|1\|B, 2GCS\|1\|B, 2Z75\|1\|B, 2Z74\|1\|B, 2HO7\|1\|B, 4MEH\|1\|B, 2HO6\|1\|B	(0)	(2) 2H0Z\|1\|B, 2H0S\|1\|B

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	4MEG\|1\|B	In vitro evolved glmS ribozyme triple mutant, magnesium ion complex	X-RAY DIFFRACTION	3.1	121
2	2GCV\|1\|B	Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme	X-RAY DIFFRACTION	2.1	122
3	2H0W\|1\|B	Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme	X-RAY DIFFRACTION	2.4	122
4	2HO6\|1\|B	Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme	X-RAY DIFFRACTION	2.8	122
5	2HO7\|1\|B	Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate	X-RAY DIFFRACTION	2.9	122
6	3B4B\|1\|B	T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage	X-RAY DIFFRACTION	2.7	123
7	2GCS\|1\|B	Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme	X-RAY DIFFRACTION	2.1	122
8	2H0X\|1\|B	Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme	X-RAY DIFFRACTION	2.3	122
9	2Z75\|1\|B	T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate	X-RAY DIFFRACTION	1.7	123
10	2Z74\|1\|B	T. tengcongensis glmS ribozyme bound to glucose-6-phosphate	X-RAY DIFFRACTION	2.2	123
11	3B4A\|1\|B	T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate	X-RAY DIFFRACTION	2.7	121
12	3B4C\|1\|B	T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage	X-RAY DIFFRACTION	3	121
13	4MEH\|1\|B	In vitro evolved glmS ribozyme triple mutant, calcium ion complex	X-RAY DIFFRACTION	3.12	122

Equivalence class NR_4.0_35133.2 Obsolete

Release history

Parents

Children