Equivalence class NR_4.0_35542.118 Obsolete
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 5L4O|1|A (rep) | Transfer RNA | tRNA (76-MER) | Escherichia coli | Bacteria | RF00005 | Structure of an E.coli initiator tRNAfMet A1-U72 variant | X-ray diffraction | 2.8 | 2017-03-01 |
2 | 5HCQ|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.8 | 2016-04-06 |
3 | 4V6G|1|CC | Transfer RNA | MRNA, TRNA FMET (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Initiation complex of 70S ribosome with two tRNAs and mRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
4 | 4WQ1|1|2K | Transfer RNA | mRNA, tRNA-fMET | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site. | X-ray diffraction | 3.1 | 2015-06-10 |
5 | 5IBB|1|2K | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site | X-ray diffraction | 2.96 | 2016-05-25 |
6 | 8EKB|1|1x | Transfer RNA | M-Stop-mRNA, P-site deacylated tRNAmet | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution | X-ray diffraction | 2.7 | 2022-12-21 |
7 | 6CAE|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2018-04-18 |
8 | 7U2J|1|1x | Transfer RNA | MG-mRNA, P-site Peptidyl-tRNA fMAC-NH-tRNAmet RNA-part | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution | X-ray diffraction | 2.55 | 2022-07-13 |
9 | 4WQR|1|2K | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site. | X-ray diffraction | 3.15 | 2015-06-10 |
10 | 5HCQ|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.8 | 2016-04-06 |
11 | 8EKB|1|2x | Transfer RNA | M-Stop-mRNA, P-site deacylated tRNAmet | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution | X-ray diffraction | 2.7 | 2022-12-21 |
12 | 4V5F|1|CV | Transfer RNA | E-SITE TRNA FMET OR P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54), MRNA | Escherichia coli | Bacteria | RF00005 | The structure of the ribosome with elongation factor G trapped in the post-translocational state | X-ray diffraction | 3.6 | 2014-07-09 |
13 | 7OSA|1|PSIT | Transfer RNA | MRNA, Psite tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-ray diffraction | 3 | 2021-12-08 |
14 | 7U2H|1|1x | Transfer RNA | MG-mRNA, P-site Aminoacyl-tRNA fMet-NH-tRNAmet | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, and deacylated E-site tRNAgly at 2.55A resolution | X-ray diffraction | 2.55 | 2022-07-13 |
15 | 5IB7|1|2K | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin | X-ray diffraction | 2.99 | 2016-05-25 |
16 | 4V8D|1|CC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Structure analysis of ribosomal decoding (cognate tRNA-tyr complex). | X-ray diffraction | 3 | 2014-07-09 |
17 | 7RQ8|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution | X-ray diffraction | 2.5 | 2021-10-13 |
18 | 5HCR|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.8 | 2016-04-06 |
19 | 4Z8C|1|1x | Transfer RNA | Initiator Methionine tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin | X-ray diffraction | 2.9 | 2015-05-20 |
20 | 5J4B|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2016-04-27 |
21 | 7U2J|1|2x | Transfer RNA | MG-mRNA, P-site Peptidyl-tRNA fMAC-NH-tRNAmet RNA-part | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution | X-ray diffraction | 2.55 | 2022-07-13 |
22 | 4WQ1|1|2L | Transfer RNA | mRNA, tRNA-fMET | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site. | X-ray diffraction | 3.1 | 2015-06-10 |
23 | 6XHY|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution | X-ray diffraction | 2.6 | 2020-12-23 |
24 | 5EL7|1|2K | Transfer RNA | E. coli tRNAfMet, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin | X-ray diffraction | 3.15 | 2016-01-27 |
25 | 4WSD|1|2L | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin. | X-ray diffraction | 2.95 | 2015-06-10 |
26 | 8EV7|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with kanamycin, mRNA, and A-, P-, and E-site tRNAs | X-ray diffraction | 2.89 | 2023-08-09 |
27 | 4V8D|1|AC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Structure analysis of ribosomal decoding (cognate tRNA-tyr complex). | X-ray diffraction | 3 | 2014-07-09 |
28 | 5IBB|1|2L | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site | X-ray diffraction | 2.96 | 2016-05-25 |
29 | 6XHY|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution | X-ray diffraction | 2.6 | 2020-12-23 |
30 | 5J4B|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2016-04-27 |
31 | 4Z8C|1|2x | Transfer RNA | Initiator Methionine tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin | X-ray diffraction | 2.9 | 2015-05-20 |
32 | 4WSD|1|2K | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin. | X-ray diffraction | 2.95 | 2015-06-10 |
33 | 6CAE|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2018-04-18 |
34 | 4WT1|1|2L | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site | X-ray diffraction | 3.05 | 2015-06-10 |
35 | 4WQR|1|2L | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site. | X-ray diffraction | 3.15 | 2015-06-10 |
36 | 5J4C|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution | X-ray diffraction | 2.8 | 2016-04-27 |
37 | 4WPO|1|BX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
38 | 5W4K|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-ray diffraction | 2.7 | 2017-08-30 |
39 | 1VY4|1|AX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-ray diffraction | 2.6 | 2014-08-20 |
40 | 6OF1|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution | X-ray diffraction | 2.8 | 2019-04-17 |
41 | 4V6G|1|AC | Transfer RNA | MRNA, TRNA FMET (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Initiation complex of 70S ribosome with two tRNAs and mRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
42 | 5DFE|1|XV | Transfer RNA | messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | 70S termination complex containing E. coli RF2 | X-ray diffraction | 3.1 | 2016-10-12 |
43 | 6QNQ|1|2K | Transfer RNA | E. coli tRNAfMet, mRNA | Escherichia coli | Bacteria | RF00005 | 70S ribosome initiation complex (IC) with experimentally assigned potassium ions | X-ray diffraction | 3.5 | 2019-06-19 |
44 | 6XHW|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution | X-ray diffraction | 2.5 | 2020-12-23 |
45 | 4W2H|1|AX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-ray diffraction | 2.7 | 2014-10-15 |
46 | 7RQ8|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution | X-ray diffraction | 2.5 | 2021-10-13 |
47 | 5HCR|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.8 | 2016-04-06 |
48 | 5EL7|1|2L | Transfer RNA | E. coli tRNAfMet, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin | X-ray diffraction | 3.15 | 2016-01-27 |
49 | 5HD1|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.7 | 2016-04-06 |
50 | 4LNT|1|XV | Transfer RNA | A-site ASL SufA6, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome | X-ray diffraction | 2.94 | 2014-08-06 |
51 | 5HCP|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.89 | 2016-04-06 |
52 | 6OF1|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution | X-ray diffraction | 2.8 | 2019-04-17 |
53 | 8CVK|1|1x | Transfer RNA | MF-mRNA, P-site Peptidyl-tRNA fMRC-NH-tRNAmet RNA-part | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution | X-ray diffraction | 2.5 | 2022-10-19 |
54 | 5HAU|1|1w | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 3 | 2016-04-06 |
55 | 5J4C|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution | X-ray diffraction | 2.8 | 2016-04-27 |
56 | 7U2I|1|1x | Transfer RNA | MG-mRNA, P-site Aminoacyl-tRNA fMet-NH-tRNAmet | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution | X-ray diffraction | 2.55 | 2022-07-13 |
57 | 4W2I|1|AX | Transfer RNA | E-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.7 | 2014-10-15 |
58 | 6XHV|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution | X-ray diffraction | 2.4 | 2020-12-23 |
59 | 5WIS|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-ray diffraction | 2.7 | 2018-02-14 |
60 | 5IB7|1|2L | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin | X-ray diffraction | 2.99 | 2016-05-25 |
61 | 5EL6|1|2K | Transfer RNA | E. coli tRNAfMet, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin | X-ray diffraction | 3.1 | 2016-01-27 |
62 | 4WT1|1|2K | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site | X-ray diffraction | 3.05 | 2015-06-10 |
63 | 5IB8|1|2K | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site | X-ray diffraction | 3.13 | 2016-05-25 |
64 | 4W2G|1|CX | Transfer RNA | E-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.55 | 2014-10-15 |
65 | 6XQD|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution | X-ray diffraction | 2.8 | 2020-08-05 |
66 | 6ND5|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution | X-ray diffraction | 2.6 | 2019-03-20 |
67 | 4LNT|1|QV | Transfer RNA | A-site ASL SufA6, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome | X-ray diffraction | 2.94 | 2014-08-06 |
68 | 4W2H|1|CX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-ray diffraction | 2.7 | 2014-10-15 |
69 | 4V7M|1|AX | Transfer RNA | RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3'), tRNA-Met | Escherichia coli | Bacteria | RF00005 | The structures of Capreomycin bound to the 70S ribosome. | X-ray diffraction | 3.45 | 2014-07-09 |
70 | 5W4K|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-ray diffraction | 2.7 | 2017-08-30 |
71 | 8EV7|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with kanamycin, mRNA, and A-, P-, and E-site tRNAs | X-ray diffraction | 2.89 | 2023-08-09 |
72 | 4YZV|1|XV | Transfer RNA | messenger RNA, P-site tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon | X-ray diffraction | 3.1 | 2015-10-21 |
73 | 8CVK|1|2x | Transfer RNA | MF-mRNA, P-site Peptidyl-tRNA fMRC-NH-tRNAmet RNA-part | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution | X-ray diffraction | 2.5 | 2022-10-19 |
74 | 7U2H|1|2x | Transfer RNA | MG-mRNA, P-site Aminoacyl-tRNA fMet-NH-tRNAmet | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, and deacylated E-site tRNAgly at 2.55A resolution | X-ray diffraction | 2.55 | 2022-07-13 |
75 | 4V5F|1|AV | Transfer RNA | E-SITE TRNA FMET OR P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54), MRNA | Escherichia coli | Bacteria | RF00005 | The structure of the ribosome with elongation factor G trapped in the post-translocational state | X-ray diffraction | 3.6 | 2014-07-09 |
76 | 5DFE|1|QV | Transfer RNA | messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | 70S termination complex containing E. coli RF2 | X-ray diffraction | 3.1 | 2016-10-12 |
77 | 4WRA|1|2K | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin. | X-ray diffraction | 3.05 | 2015-06-10 |
78 | 6XHW|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution | X-ray diffraction | 2.5 | 2020-12-23 |
79 | 4WRA|1|2L | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin. | X-ray diffraction | 3.05 | 2015-06-10 |
80 | 5EL6|1|2L | Transfer RNA | E. coli tRNAfMet, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin | X-ray diffraction | 3.1 | 2016-01-27 |
81 | 5HAU|1|2w | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 3 | 2016-04-06 |
82 | 5E7K|1|2K | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site | X-ray diffraction | 3.2 | 2016-01-27 |
83 | 6XQD|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution | X-ray diffraction | 2.8 | 2020-08-05 |
84 | 6XHV|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution | X-ray diffraction | 2.4 | 2020-12-23 |
85 | 5IB8|1|2L | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site | X-ray diffraction | 3.13 | 2016-05-25 |
86 | 4V9S|1|AX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antibiotic GE82832 bound to 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
87 | 4Y4P|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-ray diffraction | 2.5 | 2015-03-18 |
88 | 4W2G|1|AX | Transfer RNA | E-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.55 | 2014-10-15 |
89 | 4WR6|1|2K | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site. | X-ray diffraction | 3.05 | 2015-06-10 |
90 | 6O97|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution | X-ray diffraction | 2.75 | 2019-04-17 |
91 | 8CVJ|1|1x | Transfer RNA | MF-mRNA, P-site Peptidyl-tRNA fMSEAC-NH-tRNAmet RNA-part | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution | X-ray diffraction | 2.4 | 2022-10-19 |
92 | 4WR6|1|2L | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site. | X-ray diffraction | 3.05 | 2015-06-10 |
93 | 3CW5|1|A | Transfer RNA | Initiator tRNA | Escherichia coli | Bacteria | RF00005 | E. coli Initiator tRNA | X-ray diffraction | 3.1 | 2008-09-02 |
94 | 5EL4|1|2K | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position | X-ray diffraction | 3.15 | 2016-01-27 |
95 | 5HCP|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.89 | 2016-04-06 |
96 | 5DOY|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution | X-ray diffraction | 2.6 | 2015-12-30 |
97 | 4ZER|1|1x | Transfer RNA | mRNA, tRNA met | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 3.1 | 2015-05-20 |
98 | 5WIT|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2018-02-14 |
99 | 4W4G|1|XV | Transfer RNA | messenger RNA, tRNA fMet | Escherichia coli | Bacteria | RF00005 | Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon | X-ray diffraction | 3.3 | 2015-10-21 |
100 | 5EL5|1|2K | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position | X-ray diffraction | 3.15 | 2016-01-27 |
101 | 6QNQ|1|2L | Transfer RNA | E. coli tRNAfMet, mRNA | Escherichia coli | Bacteria | RF00005 | 70S ribosome initiation complex (IC) with experimentally assigned potassium ions | X-ray diffraction | 3.5 | 2019-06-19 |
102 | 8EV6|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs | X-ray diffraction | 2.946 | 2023-08-09 |
103 | 5HD1|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.7 | 2016-04-06 |
104 | 4W2I|1|CX | Transfer RNA | E-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.7 | 2014-10-15 |
105 | 4V9S|1|CX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antibiotic GE82832 bound to 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
106 | 6ND5|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution | X-ray diffraction | 2.6 | 2019-03-20 |
107 | 8CVJ|1|2x | Transfer RNA | MF-mRNA, P-site Peptidyl-tRNA fMSEAC-NH-tRNAmet RNA-part | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution | X-ray diffraction | 2.4 | 2022-10-19 |
108 | 8CVL|1|1x | Transfer RNA | MF-mRNA, P-site Peptidyl-tRNA fMTHSMRC-NH-tRNAmet RNA-part | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution | X-ray diffraction | 2.3 | 2022-10-19 |
109 | 5E7K|1|2L | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site | X-ray diffraction | 3.2 | 2016-01-27 |
110 | 7RQ9|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution | X-ray diffraction | 2.6 | 2021-10-13 |
111 | 1VY7|1|AX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-ray diffraction | 2.8 | 2014-08-20 |
112 | 4Z3S|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-ray diffraction | 2.65 | 2015-06-03 |
113 | 1VY4|1|CX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-ray diffraction | 2.6 | 2014-08-20 |
114 | 4W2F|1|AX | Transfer RNA | E-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.4 | 2014-10-15 |
115 | 1VY5|1|AX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-ray diffraction | 2.55 | 2014-08-20 |
116 | 4YZV|1|QV | Transfer RNA | messenger RNA, P-site tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon | X-ray diffraction | 3.1 | 2015-10-21 |
117 | 4WPO|1|DX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
118 | 4V51|1|CV | Transfer RNA | E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES), MRNA, P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54) | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-ray diffraction | 2.8 | 2014-07-09 |
119 | 4V8Q|1|BV | Transfer RNA | E-SITE or P-SITE TRNA FMET, MRNA | Escherichia coli | Bacteria | RF00005 | Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
120 | 7JQL|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution | X-ray diffraction | 3 | 2020-08-26 |
121 | 7U2I|1|2x | Transfer RNA | MG-mRNA, P-site Aminoacyl-tRNA fMet-NH-tRNAmet | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution | X-ray diffraction | 2.55 | 2022-07-13 |
122 | 8CVL|1|2x | Transfer RNA | MF-mRNA, P-site Peptidyl-tRNA fMTHSMRC-NH-tRNAmet RNA-part | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution | X-ray diffraction | 2.3 | 2022-10-19 |
123 | 4ZSN|1|XV | Transfer RNA | messenger RNA, P-site tRNA-fMet | Escherichia coli | Bacteria | RF00005 | 70S-wild-type HigB toxin complex bound to a AAA lysine codon | X-ray diffraction | 3.6 | 2016-09-07 |
124 | 7JQM|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-002, mRNA, and deacylated P-site tRNA at 3.05A resolution | X-ray diffraction | 3.05 | 2020-08-26 |
125 | 4YPB|1|XV | Transfer RNA | messenger RNA, tRNA fMet | Escherichia coli | Bacteria | RF00005 | Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon | X-ray diffraction | 3.4 | 2015-10-21 |
126 | 7JQL|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution | X-ray diffraction | 3 | 2020-08-26 |
127 | 4W4G|1|QV | Transfer RNA | messenger RNA, tRNA fMet | Escherichia coli | Bacteria | RF00005 | Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon | X-ray diffraction | 3.3 | 2015-10-21 |
128 | 4V9R|1|AX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome | X-ray diffraction | 3 | 2014-07-09 |
129 | 4WZO|1|2K | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-fMet and mRNA | X-ray diffraction | 3.3 | 2015-06-10 |
130 | 7RQ9|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution | X-ray diffraction | 2.6 | 2021-10-13 |
131 | 5EL4|1|2L | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position | X-ray diffraction | 3.15 | 2016-01-27 |
132 | 4V9R|1|CX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome | X-ray diffraction | 3 | 2014-07-09 |
133 | 4W2F|1|CX | Transfer RNA | E-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.4 | 2014-10-15 |
134 | 5WIS|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-ray diffraction | 2.7 | 2018-02-14 |
135 | 4WRO|1|2K | Transfer RNA | RNA (30-MER), tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site | X-ray diffraction | 3.05 | 2015-06-10 |
136 | 4V8E|1|DC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex). | X-ray diffraction | 3.3 | 2014-07-09 |
137 | 4V51|1|AV | Transfer RNA | E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES), MRNA, P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54) | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-ray diffraction | 2.8 | 2014-07-09 |
138 | 6ND6|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution | X-ray diffraction | 2.85 | 2019-02-20 |
139 | 4V5C|1|AV | Transfer RNA | MRNA, P-SITE TRNA FMET | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-ray diffraction | 3.3 | 2014-07-09 |
140 | 6O97|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution | X-ray diffraction | 2.75 | 2019-04-17 |
141 | 4Y4P|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-ray diffraction | 2.5 | 2015-03-18 |
142 | 7JQM|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-002, mRNA, and deacylated P-site tRNA at 3.05A resolution | X-ray diffraction | 3.05 | 2020-08-26 |
143 | 1VY6|1|AX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-ray diffraction | 2.9 | 2014-08-20 |
144 | 4Z3S|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-ray diffraction | 2.65 | 2015-06-03 |
145 | 4ZER|1|2x | Transfer RNA | mRNA, tRNA met | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 3.1 | 2015-05-20 |
146 | 6UO1|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution | X-ray diffraction | 2.95 | 2019-11-27 |
147 | 6UO1|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution | X-ray diffraction | 2.95 | 2019-11-27 |
148 | 4ZSN|1|QV | Transfer RNA | messenger RNA, P-site tRNA-fMet | Escherichia coli | Bacteria | RF00005 | 70S-wild-type HigB toxin complex bound to a AAA lysine codon | X-ray diffraction | 3.6 | 2016-09-07 |
149 | 1VY6|1|CX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-ray diffraction | 2.9 | 2014-08-20 |
150 | 8EV6|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs | X-ray diffraction | 2.946 | 2023-08-09 |
151 | 4WQY|1|BX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid) | X-ray diffraction | 2.8 | 2015-01-28 |
152 | 5DOY|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution | X-ray diffraction | 2.6 | 2015-12-30 |
153 | 4WRO|1|2L | Transfer RNA | RNA (30-MER), tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site | X-ray diffraction | 3.05 | 2015-06-10 |
154 | 5WIT|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2018-02-14 |
155 | 4V8F|1|BC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin). | X-ray diffraction | 3.3 | 2014-07-09 |
156 | 5F8K|1|1x | Transfer RNA | mRNA, tRNAiMet | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.8 | 2016-02-03 |
157 | 4V5C|1|CV | Transfer RNA | MRNA, P-SITE TRNA FMET | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-ray diffraction | 3.3 | 2014-07-09 |
158 | 4V87|1|CC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding. | X-ray diffraction | 3.1 | 2014-07-09 |
159 | 7OSM|1|PSIT | Transfer RNA | FMET tRNA, MRNA | Escherichia coli | Bacteria | RF00005 | Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-ray diffraction | 3 | 2021-12-08 |
160 | 4WZO|1|2L | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-fMet and mRNA | X-ray diffraction | 3.3 | 2015-06-10 |
161 | 4TUC|1|QV | Transfer RNA | A-site ASL-SufJ, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal structure of ASL-SufJ bound to Codon ACC-A on the Ribosome | X-ray diffraction | 3.6 | 2015-05-13 |
162 | 6ND6|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution | X-ray diffraction | 2.85 | 2019-02-20 |
163 | 1VY5|1|CX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-ray diffraction | 2.55 | 2014-08-20 |
164 | 4YPB|1|QV | Transfer RNA | messenger RNA, tRNA fMet | Escherichia coli | Bacteria | RF00005 | Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon | X-ray diffraction | 3.4 | 2015-10-21 |
165 | 4V8B|1|AC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-ray diffraction | 3 | 2014-07-09 |
166 | 4P6F|1|XV | Transfer RNA | E-Site tRNA-Phe or A-Site tRNA-Phe, mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Crystal structure of the peptolide 12C bound to bacterial ribosome | X-ray diffraction | 3.6 | 2014-10-01 |
167 | 4LT8|1|XV | Transfer RNA | A-site ASL Pro, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome | X-ray diffraction | 3.14 | 2014-08-06 |
168 | 4V87|1|BC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding. | X-ray diffraction | 3.1 | 2014-07-09 |
169 | 4V8C|1|DC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-ray diffraction | 3.3 | 2014-07-09 |
170 | 4TUC|1|XV | Transfer RNA | A-site ASL-SufJ, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal structure of ASL-SufJ bound to Codon ACC-A on the Ribosome | X-ray diffraction | 3.6 | 2015-05-13 |
171 | 5EL5|1|2L | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position | X-ray diffraction | 3.15 | 2016-01-27 |
172 | 4V7M|1|CX | Transfer RNA | RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3'), RNA (77-MER) | Escherichia coli | Bacteria | RF00005 | The structures of Capreomycin bound to the 70S ribosome. | X-ray diffraction | 3.45 | 2014-07-09 |
173 | 4V5F|1|AW | Transfer RNA | E-SITE TRNA FMET OR P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54) | Escherichia coli | Bacteria | RF00005 | The structure of the ribosome with elongation factor G trapped in the post-translocational state | X-ray diffraction | 3.6 | 2014-07-09 |
174 | 4V8E|1|BC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex). | X-ray diffraction | 3.3 | 2014-07-09 |
175 | 4V5F|1|CW | Transfer RNA | E-SITE TRNA FMET OR P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54) | Escherichia coli | Bacteria | RF00005 | The structure of the ribosome with elongation factor G trapped in the post-translocational state | X-ray diffraction | 3.6 | 2014-07-09 |
176 | 4TUA|1|XV | Transfer RNA | A-site ASL-Thr, messenger RNA, P-site tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Crystal structure of ASL-Thr bound to Codon ACC-A on the Ribosome | X-ray diffraction | 3.6 | 2015-05-13 |
177 | 6XQE|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution | X-ray diffraction | 3 | 2020-08-05 |
178 | 7LH5|1|AV | Transfer RNA | E-Site tRNA Phe and A-site tRNA Phe, mRNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs | X-ray diffraction | 3.27 | 2021-06-02 |
179 | 4V9I|1|AV | Transfer RNA | mRNA, P-SITE tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon | X-ray diffraction | 3.3 | 2014-07-09 |
180 | 7LH5|1|CV | Transfer RNA | E-Site tRNA Phe and A-site tRNA Phe, mRNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs | X-ray diffraction | 3.27 | 2021-06-02 |
181 | 4TUA|1|QV | Transfer RNA | A-site ASL-Thr, messenger RNA, P-site tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Crystal structure of ASL-Thr bound to Codon ACC-A on the Ribosome | X-ray diffraction | 3.6 | 2015-05-13 |
182 | 6GSK|1|2L | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site | X-ray diffraction | 3.36 | 2018-07-04 |
183 | 4V67|1|AY | Transfer RNA | MRNA, P AND E-SITE TRNA(FMET) | Escherichia coli | Bacteria | RF00005 | Crystal structure of a translation termination complex formed with release factor RF2. | X-ray diffraction | 3 | 2014-07-09 |
184 | 6XQE|1|2x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution | X-ray diffraction | 3 | 2020-08-05 |
185 | 4TUB|1|XV | Transfer RNA | A-site tRNA Thr, messenger RNA, P-site tRNA f-Met | Escherichia coli | Bacteria | RF00005 | Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome | X-ray diffraction | 3.6 | 2015-05-13 |
186 | 4V7L|1|CX | Transfer RNA | RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3'), tRNA-Met | Escherichia coli | Bacteria | RF00005 | The structures of viomycin bound to the 70S ribosome. | X-ray diffraction | 3 | 2014-07-09 |
187 | 6N9E|1|1x | Transfer RNA | mRNA, P-site tRNA, Deacylated Initiator Methionyl-tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution | X-ray diffraction | 3.7 | 2018-12-12 |
188 | 4V7P|1|DW | Transfer RNA | messenger RNA (5'-R(*AP*AP*UP*GP*UP*AP*G)-3'), P-site tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Recognition of the amber stop codon by release factor RF1. | X-ray diffraction | 3.62 | 2014-07-09 |
189 | 4V8B|1|CC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-ray diffraction | 3 | 2014-07-09 |
190 | 4TUB|1|QV | Transfer RNA | A-site tRNA Thr, messenger RNA, P-site tRNA f-Met | Escherichia coli | Bacteria | RF00005 | Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome | X-ray diffraction | 3.6 | 2015-05-13 |
191 | 4V7L|1|AX | Transfer RNA | RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3'), tRNA-Met | Escherichia coli | Bacteria | RF00005 | The structures of viomycin bound to the 70S ribosome. | X-ray diffraction | 3 | 2014-07-09 |
192 | 4TUD|1|QV | Transfer RNA | A-site ASL-SufJ, messenger RNA, P-site tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome | X-ray diffraction | 3.6 | 2015-05-13 |
193 | 4LT8|1|QV | Transfer RNA | A-site ASL Pro, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome | X-ray diffraction | 3.14 | 2014-08-06 |
194 | 4P6F|1|QV | Transfer RNA | E-Site tRNA-Phe or A-Site tRNA-Phe, mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Crystal structure of the peptolide 12C bound to bacterial ribosome | X-ray diffraction | 3.6 | 2014-10-01 |
195 | 6N9E|1|2x | Transfer RNA | mRNA, P-site tRNA, Deacylated Initiator Methionyl-tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution | X-ray diffraction | 3.7 | 2018-12-12 |
196 | 4P70|1|XV | Transfer RNA | A site ASL of tRNA-Proline CGG (unmodified), mRNA, P-site tRNA fMET | Escherichia coli | Bacteria | RF00005 | Crystal Structure of Unmodified tRNA Proline (CGG) Bound to Codon CCG on the Ribosome | X-ray diffraction | 3.68 | 2014-08-13 |
197 | 4V8C|1|CC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-ray diffraction | 3.3 | 2014-07-09 |
198 | 6N9F|1|1x | Transfer RNA | mRNA, P-site tRNA, Deacylated Initiator Methionyl-tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution | X-ray diffraction | 3.7 | 2018-12-12 |
199 | 4V5K|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome | X-ray diffraction | 3.2 | 2014-07-09 |
200 | 5F8K|1|2x | Transfer RNA | mRNA, tRNAiMet | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.8 | 2016-02-03 |
201 | 4V7P|1|AW | Transfer RNA | messenger RNA (5'-R(*AP*AP*UP*GP*UP*AP*G)-3'), P-site tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Recognition of the amber stop codon by release factor RF1. | X-ray diffraction | 3.62 | 2014-07-09 |
202 | 4V67|1|CY | Transfer RNA | MRNA, P AND E-SITE TRNA(FMET) | Escherichia coli | Bacteria | RF00005 | Crystal structure of a translation termination complex formed with release factor RF2. | X-ray diffraction | 3 | 2014-07-09 |
203 | 4P70|1|QV | Transfer RNA | A site ASL of tRNA-Proline CGG (unmodified), mRNA, P-site tRNA fMET | Escherichia coli | Bacteria | RF00005 | Crystal Structure of Unmodified tRNA Proline (CGG) Bound to Codon CCG on the Ribosome | X-ray diffraction | 3.68 | 2014-08-13 |
204 | 4TUD|1|XV | Transfer RNA | A-site ASL-SufJ, messenger RNA, P-site tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome | X-ray diffraction | 3.6 | 2015-05-13 |
205 | 1VVJ|1|XV | Transfer RNA | A-site ASL SufA6, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome | X-ray diffraction | 3.44 | 2014-08-06 |
206 | 6QNQ|1|3K | Transfer RNA | E. coli tRNAfMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome initiation complex (IC) with experimentally assigned potassium ions | X-ray diffraction | 3.5 | 2019-06-19 |
207 | 4WQY|1|DX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid) | X-ray diffraction | 2.8 | 2015-01-28 |
208 | 1VY7|1|CX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-ray diffraction | 2.8 | 2014-08-20 |
209 | 6N9F|1|2x | Transfer RNA | mRNA, P-site tRNA, Deacylated Initiator Methionyl-tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution | X-ray diffraction | 3.7 | 2018-12-12 |
210 | 5CZP|1|XV | Transfer RNA | mRNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | 70S termination complex containing E. coli RF2 | X-ray diffraction | 3.3 | 2016-10-12 |
211 | 6GSK|1|2K | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site | X-ray diffraction | 3.36 | 2018-07-04 |
212 | 5CZP|1|QV | Transfer RNA | mRNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | 70S termination complex containing E. coli RF2 | X-ray diffraction | 3.3 | 2016-10-12 |
213 | 4V9I|1|CV | Transfer RNA | mRNA, P-SITE tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon | X-ray diffraction | 3.3 | 2014-07-09 |
214 | 4V8F|1|CC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin). | X-ray diffraction | 3.3 | 2014-07-09 |
215 | 4LSK|1|XV | Transfer RNA | A-site ASL SufA6, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome | X-ray diffraction | 3.48 | 2014-08-06 |
216 | 4V6G|1|CD | Transfer RNA | TRNA FMET (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Initiation complex of 70S ribosome with two tRNAs and mRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
217 | 4V63|1|AY | Transfer RNA | mRNA, P and E-site tRNA(fMet) | Escherichia coli | Bacteria | RF00005 | Structural basis for translation termination on the 70S ribosome. | X-ray diffraction | 3.21 | 2014-07-09 |
218 | 4LFZ|1|XV | Transfer RNA | A-site ASL SufA6, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin | X-ray diffraction | 3.92 | 2014-08-06 |
219 | 4LSK|1|QV | Transfer RNA | A-site ASL SufA6, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome | X-ray diffraction | 3.48 | 2014-08-06 |
220 | 4V63|1|CY | Transfer RNA | mRNA, P and E-site tRNA(fMet) | Escherichia coli | Bacteria | RF00005 | Structural basis for translation termination on the 70S ribosome. | X-ray diffraction | 3.21 | 2014-07-09 |
221 | 1VVJ|1|QV | Transfer RNA | A-site ASL SufA6, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome | X-ray diffraction | 3.44 | 2014-08-06 |
222 | 4LFZ|1|QV | Transfer RNA | A-site ASL SufA6, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin | X-ray diffraction | 3.92 | 2014-08-06 |
223 | 3CW6|1|A | Transfer RNA | Initiator tRNA | Escherichia coli | Bacteria | RF00005 | E. coli Initiator tRNA | X-ray diffraction | 3.3 | 2008-09-02 |
224 | 3QSY|1|D | Transfer RNA | tRNA | Escherichia coli | Bacteria | RF00005 | Recognition of the methionylated initiator tRNA by the translation initiation factor 2 in Archaea | X-ray diffraction | 3.2 | 2012-03-21 |
225 | 4L71|1|XV | Transfer RNA | A-site ASL SufA6, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome | X-ray diffraction | 3.9 | 2014-08-06 |
226 | 6QNQ|1|3L | Transfer RNA | E. coli tRNAfMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome initiation complex (IC) with experimentally assigned potassium ions | X-ray diffraction | 3.5 | 2019-06-19 |
227 | 5D8B|1|FD | Transfer RNA | mRNA, tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch | X-ray diffraction | 3.63 | 2015-10-14 |
228 | 6B4V|1|HB | Transfer RNA | tRNA | Escherichia coli | Bacteria | RF00005 | Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome | X-ray diffraction | 3.4 | 2018-02-07 |
229 | 4V97|1|AV | Transfer RNA | E-SITE TRNA PHE OR A-SITE tRNA Phe, mRNA, P-SITE tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal structure of the bacterial ribosome ram mutation G299A. | X-ray diffraction | 3.52 | 2014-07-09 |
230 | 4LEL|1|XV | Transfer RNA | A-site ASL SufA6, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCG-G on the Ribosome | X-ray diffraction | 3.9 | 2014-08-06 |
231 | 4V6G|1|AD | Transfer RNA | TRNA FMET (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Initiation complex of 70S ribosome with two tRNAs and mRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
232 | 4V8C|1|DD | Transfer RNA | TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-ray diffraction | 3.3 | 2014-07-09 |
233 | 4WZO|1|1K | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-fMet and mRNA | X-ray diffraction | 3.3 | 2015-06-10 |
234 | 4L71|1|QV | Transfer RNA | A-site ASL SufA6, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome | X-ray diffraction | 3.9 | 2014-08-06 |
235 | 6B4V|1|IA | Transfer RNA | mRNA, tRNA | Escherichia coli | Bacteria | RF00005 | Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome | X-ray diffraction | 3.4 | 2018-02-07 |
236 | 5D8B|1|ED | Transfer RNA | mRNA, tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch | X-ray diffraction | 3.63 | 2015-10-14 |
237 | 6B4V|1|D | Transfer RNA | tRNA | Escherichia coli | Bacteria | RF00005 | Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome | X-ray diffraction | 3.4 | 2018-02-07 |
238 | 4V5K|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome | X-ray diffraction | 3.2 | 2014-07-09 |
239 | 6B4V|1|MC | Transfer RNA | mRNA, tRNA | Escherichia coli | Bacteria | RF00005 | Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome | X-ray diffraction | 3.4 | 2018-02-07 |
240 | 4LEL|1|QV | Transfer RNA | A-site ASL SufA6, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCG-G on the Ribosome | X-ray diffraction | 3.9 | 2014-08-06 |
241 | 4V8C|1|CD | Transfer RNA | TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-ray diffraction | 3.3 | 2014-07-09 |
242 | 4V97|1|CV | Transfer RNA | E-SITE TRNA PHE OR A-SITE tRNA Phe, mRNA, P-SITE tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal structure of the bacterial ribosome ram mutation G299A. | X-ray diffraction | 3.52 | 2014-07-09 |
243 | 4V8B|1|AD | Transfer RNA | TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-ray diffraction | 3 | 2014-07-09 |
244 | 4V87|1|BD | Transfer RNA | TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding. | X-ray diffraction | 3.1 | 2014-07-09 |
245 | 7CHD|1|I | Transfer RNA | RNA (77-MER) | Escherichia coli | Bacteria | RF00005 | AtaT complexed with acetyl-methionyl-tRNAfMet | X-ray diffraction | 3.804 | 2020-11-04 |
246 | 6QNQ|1|1K | Transfer RNA | E. coli tRNAfMet, mRNA | Escherichia coli | Bacteria | RF00005 | 70S ribosome initiation complex (IC) with experimentally assigned potassium ions | X-ray diffraction | 3.5 | 2019-06-19 |
247 | 7CHD|1|J | Transfer RNA | RNA (77-MER) | Escherichia coli | Bacteria | RF00005 | AtaT complexed with acetyl-methionyl-tRNAfMet | X-ray diffraction | 3.804 | 2020-11-04 |
248 | 4W4G|1|XW | Transfer RNA | tRNA fMet | Escherichia coli | Bacteria | RF00005 | Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon | X-ray diffraction | 3.3 | 2015-10-21 |
249 | 4W4G|1|QW | Transfer RNA | tRNA fMet | Escherichia coli | Bacteria | RF00005 | Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon | X-ray diffraction | 3.3 | 2015-10-21 |
250 | 4V87|1|CD | Transfer RNA | TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding. | X-ray diffraction | 3.1 | 2014-07-09 |
251 | 4V63|1|CZ | Transfer RNA | P and E-site tRNA(fMet) | Escherichia coli | Bacteria | RF00005 | Structural basis for translation termination on the 70S ribosome. | X-ray diffraction | 3.21 | 2014-07-09 |
252 | 4V8B|1|CD | Transfer RNA | TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-ray diffraction | 3 | 2014-07-09 |
253 | 4V67|1|AZ | Transfer RNA | P AND E-SITE TRNA(FMET) | Escherichia coli | Bacteria | RF00005 | Crystal structure of a translation termination complex formed with release factor RF2. | X-ray diffraction | 3 | 2014-07-09 |
254 | 4V63|1|AZ | Transfer RNA | P and E-site tRNA(fMet) | Escherichia coli | Bacteria | RF00005 | Structural basis for translation termination on the 70S ribosome. | X-ray diffraction | 3.21 | 2014-07-09 |
255 | 5D8B|1|XC | Transfer RNA | tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch | X-ray diffraction | 3.63 | 2015-10-14 |
256 | 4V8J|1|CV | Transfer RNA | messenger RNA, tRNA-fMet, tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of the bacterial ribosome ram mutation G347U. | X-ray diffraction | 3.9 | 2014-07-09 |
257 | 4V6G|1|CB | Transfer RNA | MRNA, TRNA FMET (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Initiation complex of 70S ribosome with two tRNAs and mRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
258 | 4V8O|1|AV | Transfer RNA | MRNA 5'-R(*AP*AP*AP*AP*AP*AP*UP*GP*UP)-3', PE HYBRID STATE TRNA FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3 | X-ray diffraction | 3.8 | 2014-07-09 |
259 | 5D8B|1|BD | Transfer RNA | tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch | X-ray diffraction | 3.63 | 2015-10-14 |
260 | 4V8J|1|AV | Transfer RNA | messenger RNA, tRNA-fMet, tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of the bacterial ribosome ram mutation G347U. | X-ray diffraction | 3.9 | 2014-07-09 |
261 | 4V67|1|CZ | Transfer RNA | P AND E-SITE TRNA(FMET) | Escherichia coli | Bacteria | RF00005 | Crystal structure of a translation termination complex formed with release factor RF2. | X-ray diffraction | 3 | 2014-07-09 |
262 | 4V5K|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome | X-ray diffraction | 3.2 | 2014-07-09 |
263 | 4V5K|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome | X-ray diffraction | 3.2 | 2014-07-09 |
264 | 4YPB|1|XW | Transfer RNA | tRNA fMet | Escherichia coli | Bacteria | RF00005 | Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon | X-ray diffraction | 3.4 | 2015-10-21 |
265 | 4YPB|1|QW | Transfer RNA | tRNA fMet | Escherichia coli | Bacteria | RF00005 | Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon | X-ray diffraction | 3.4 | 2015-10-21 |
266 | 4V8Q|1|BW | Transfer RNA | E-SITE or P-SITE TRNA FMET | Escherichia coli | Bacteria | RF00005 | Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
267 | 6GSJ|1|2L | Transfer RNA | RNA (27-MER), tRNAfMet | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site | X-ray diffraction | 2.96 | 2018-07-04 |
268 | 6GSJ|1|2K | Transfer RNA | RNA (27-MER), tRNAfMet | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site | X-ray diffraction | 2.96 | 2018-07-04 |
269 | 4V6A|1|CW | Transfer RNA | RNA (5'-R(P*AP*AP*AP*UP*G)-3'), tRNA-Met | Escherichia coli | Bacteria | RF00005 | Structure of EF-P bound to the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
270 | 4V6A|1|AW | Transfer RNA | RNA (5'-R(P*AP*AP*AP*UP*G)-3'), tRNA-Met | Escherichia coli | Bacteria | RF00005 | Structure of EF-P bound to the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
271 | 6GSL|1|2L | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site | X-ray diffraction | 3.16 | 2018-07-04 |
272 | 6GSL|1|2K | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site | X-ray diffraction | 3.16 | 2018-07-04 |
273 | 6BOH|1|NC | Transfer RNA | mRNA, tRNA | Escherichia coli | Bacteria | RF00005 | Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome | X-ray diffraction | 3.4 | 2018-05-23 |
274 | 6BOH|1|IA | Transfer RNA | mRNA, tRNA | Escherichia coli | Bacteria | RF00005 | Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome | X-ray diffraction | 3.4 | 2018-05-23 |
275 | 6BOH|1|D | Transfer RNA | tRNA | Escherichia coli | Bacteria | RF00005 | Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome | X-ray diffraction | 3.4 | 2018-05-23 |
276 | 6BOH|1|IB | Transfer RNA | tRNA | Escherichia coli | Bacteria | RF00005 | Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome | X-ray diffraction | 3.4 | 2018-05-23 |
277 | 8B0X|1|Z | Transfer RNA | mRNA, P-site tRNA | Escherichia coli B | Bacteria | RF00005 | Translating 70S ribosome in the unrotated state (P and E, tRNAs) | Electron microscopy | 1.55 | 2022-11-30 |
278 | 8FTO|1|Z | Transfer RNA | mRNA, P-site tRNA-fMet | Escherichia coli | Bacteria | RF00005 | E. coli 70S ribosome with an improved MS2 tag inserted in H98 | Electron microscopy | 1.85 | 2023-08-02 |
279 | 8AYE|1|Z | Transfer RNA | mRNA, P-site tRNA-fMet | Escherichia coli | Bacteria | RF00005 | E. coli 70S ribosome bound to thermorubin and fMet-tRNA | Electron microscopy | 1.96 | 2023-03-01 |
280 | 7K00|1|Z | Transfer RNA | mRNA, P-site tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Structure of the Bacterial Ribosome at 2 Angstrom Resolution | Electron microscopy | 1.98 | 2020-09-23 |
281 | 8G6W|1|Z | Transfer RNA | mRNA, P-site fMet-tRNAfMet | Escherichia coli | Bacteria | RF00005 | Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe | Electron microscopy | 2.02 | 2023-04-05 |
282 | 8BIL|1|4 | Transfer RNA | Acylated P-site tRNA(fMet), mRNA | Escherichia coli K-12 | Bacteria | RF00005 | Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site. | Electron microscopy | 2.04 | 2023-08-16 |
283 | 8EMM|1|Y | Transfer RNA | Met-NH-tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates | Electron microscopy | 2.1 | 2023-05-31 |
284 | 8EMM|1|Z | Transfer RNA | Met-NH-tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates | Electron microscopy | 2.1 | 2023-05-31 |
285 | 6XZ7|1|f | Transfer RNA | Deacylated tRNAi(Met) | Escherichia coli | Bacteria | RF00005 | E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet). | Electron microscopy | 2.1 | 2020-07-22 |
286 | 8G6Y|1|Z | Transfer RNA | mRNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe | Electron microscopy | 2.09 | 2023-04-05 |
287 | 8BIM|1|4 | Transfer RNA | Acylated P-site tRNA(fMet), mRNA | Escherichia coli K-12 | Bacteria | RF00005 | Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site | Electron microscopy | 2.04 | 2023-08-16 |
288 | 8BGE|1|4 | Transfer RNA | Acylated P-site tRNA(fMet), mRNA | Escherichia coli K-12 | Bacteria | RF00005 | Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation | Electron microscopy | 2.11 | 2023-08-16 |
289 | 8EIU|1|Y | Transfer RNA | mRNA, tRNA-fMET | Escherichia coli | Bacteria | RF00005 | E. coli 70S ribosome with A-loop mutations U2554C and U2555C | Electron microscopy | 2.24 | 2023-02-01 |
290 | 8EIU|1|Z | Transfer RNA | mRNA, tRNA-fMET | Escherichia coli | Bacteria | RF00005 | E. coli 70S ribosome with A-loop mutations U2554C and U2555C | Electron microscopy | 2.24 | 2023-02-01 |
291 | 8BF7|1|4 | Transfer RNA | Deacylated P-site tRNA(fMet), mRNA | Escherichia coli K-12 | Bacteria | RF00005 | Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site | Electron microscopy | 2.33 | 2023-08-16 |
292 | 8BHL|1|4 | Transfer RNA | Acylated P-site tRNA(fMet), mRNA | Escherichia coli K-12 | Bacteria | RF00005 | Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation | Electron microscopy | 2.21 | 2023-08-16 |
293 | 7TOP|1|APTN | Transfer RNA | tRNAfMet | Escherichia coli | Bacteria | RF00005 | Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20 | Electron microscopy | 2.4 | 2022-05-25 |
294 | 8G6X|1|Z | Transfer RNA | mRNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe | Electron microscopy | 2.31 | 2023-03-22 |
295 | 8BHP|1|4 | Transfer RNA | Deacylated P-site tRNA(fMet), mRNA | Escherichia coli K-12 | Bacteria | RF00005 | Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation | Electron microscopy | 2.37 | 2023-08-16 |
296 | 7SA4|1|5 | Transfer RNA | mRNA, P-tRNA, E-tRNA | Escherichia coli | Bacteria | RF00005 | Damaged 70S ribosome with PrfH bound | Electron microscopy | 2.55 | 2022-08-03 |
297 | 7SA4|1|6 | Transfer RNA | P-tRNA, E-tRNA | Escherichia coli | Bacteria | RF00005 | Damaged 70S ribosome with PrfH bound | Electron microscopy | 2.55 | 2022-08-03 |
298 | 6XZB|1|f2 | Transfer RNA | Deacylated tRNAi(Met) | Escherichia coli K-12 | Bacteria | RF00005 | E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification). | Electron microscopy | 2.54 | 2020-11-04 |
299 | 8BH4|1|4 | Transfer RNA | Deacylated P-site tRNA(fMet), mRNA | Escherichia coli K-12 | Bacteria | RF00005 | Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site | Electron microscopy | 2.62 | 2023-08-16 |
300 | 7UG7|1|Dt | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B | Electron microscopy | 2.58 | 2022-05-18 |
301 | 7KGB|1|y | Transfer RNA | tRNA-initiator Met(CAU) | Mycobacterium tuberculosis H37Rv | Bacteria | RF00005 | CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9 | Electron microscopy | 2.7 | 2022-01-19 |
302 | 7TOO|1|APTN | Transfer RNA | tRNAfMet | Escherichia coli | Bacteria | RF00005 | Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20 | Electron microscopy | 2.7 | 2022-05-25 |
303 | 7UNW|1|v | Transfer RNA | mRNA, P-site initiator tRNA | Escherichia coli | Bacteria | RF00005 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B) | Electron microscopy | 2.6 | 2022-06-22 |
304 | 7MT7|1|y | Transfer RNA | mRNA, tRNA (Met) | Escherichia coli | Bacteria | RF00005 | Mtb 70S with P and E site tRNAs | Electron microscopy | 2.71 | 2022-02-02 |
305 | 7MT7|1|x | Transfer RNA | tRNA (Met) | Escherichia coli | Bacteria | RF00005 | Mtb 70S with P and E site tRNAs | Electron microscopy | 2.71 | 2022-02-02 |
306 | 8G5Z|1|Pt | Transfer RNA | mRNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state) | Electron microscopy | 2.64 | 2023-04-19 |
307 | 7MT2|1|y | Transfer RNA | initiator tRNA (Met), mRNA | Escherichia coli | Bacteria | RF00005 | Mtb 70S initiation complex | Electron microscopy | 2.76 | 2022-02-02 |
308 | 6XZA|1|f2 | Transfer RNA | Deacylated tRNAi(Met) | Escherichia coli K-12 | Bacteria | RF00005 | E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification). | Electron microscopy | 2.66 | 2020-11-04 |
309 | 7MSM|1|y | Transfer RNA | initiator tRNA (Met), mRNA | Mycobacterium tuberculosis H37Rv | Bacteria | RF00005 | Mtb 70SIC in complex with MtbEttA at Trans_R0 state | Electron microscopy | 2.79 | 2022-02-02 |
310 | 7MT3|1|y | Transfer RNA | mRNA, tRNA (Met) | Escherichia coli | Bacteria | RF00005 | Mtb 70S with P/E tRNA | Electron microscopy | 2.8 | 2022-02-02 |
311 | 8CVM|1|C | Transfer RNA | Initiator fMet RNA | Escherichia coli | Bacteria | RF00005 | Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map | Electron microscopy | 2.66 | 2023-03-15 |
312 | 7UNV|1|v | Transfer RNA | mRNA, P-site initiator tRNA | Escherichia coli | Bacteria | RF00005 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A) | Electron microscopy | 2.7 | 2022-06-22 |
313 | 8EKC|1|x | Transfer RNA | M-F-Stop mRNA, P-site initiator tRNA | Escherichia coli | Bacteria | RF00005 | Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA | Electron microscopy | 2.7 | 2022-12-07 |
314 | 7NWT|1|5 | Transfer RNA | fMet-NH-tRNA(fMet), mRNA | Escherichia coli | Bacteria | RF00005 | Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV) | Electron microscopy | 2.66 | 2021-12-15 |
315 | 6AZ1|1|3 | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin | Electron microscopy | 2.7 | 2017-12-06 |
316 | 8BHJ|1|4 | Transfer RNA | Deacylated P-site tRNA(fMet), mRNA | Escherichia coli K-12 | Bacteria | RF00005 | Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site | Electron microscopy | 2.81 | 2023-08-16 |
317 | 8BGH|1|4 | Transfer RNA | Acylated P-site tRNA(fMet), mRNA | Escherichia coli K-12 | Bacteria | RF00005 | Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation | Electron microscopy | 2.88 | 2023-08-16 |
318 | 7ZAH|1|4 | Transfer RNA | mRNA, tRNA-MET | Pyrococcus abyssi GE5 | Archaea | RF00005 | Cryo-EM structure of an archaeal aIF5B bound to the ssu translation initiation complex | Electron microscopy | 2.7 | 2022-08-03 |
319 | 8CRX|1|C | Transfer RNA | 32MF mRNA, P-site initiator tRNA | Escherichia coli | Bacteria | RF00005 | Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound | Electron microscopy | 2.78 | 2023-03-22 |
320 | 7TOR|1|ETRN | Transfer RNA | tRNAfMet bound to E-site | Escherichia coli K-12 | Bacteria | RF00005 | Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20 | Electron microscopy | 2.9 | 2022-05-25 |
321 | 7ST2|1|6 | Transfer RNA | mRNA, tRNA fMet | Escherichia coli K-12 | Bacteria | RF00005 | Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII) | Electron microscopy | 2.9 | 2022-02-23 |
322 | 8AM9|1|Y | Transfer RNA | Initiator tRNA, mRNA | Escherichia coli BW25113 | Bacteria | RF00005 | Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome | Electron microscopy | 2.8 | 2023-03-08 |
323 | 7P7R|1|D | Transfer RNA | mRNA, tRNA-fMet | Enterococcus faecalis V583 | Bacteria | RF00005 | PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state I | Electron microscopy | 2.9 | 2022-03-23 |
324 | 6Y69|1|w | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX | Electron microscopy | 2.86 | 2020-07-01 |
325 | 7M5D|1|5 | Transfer RNA | mRNA, P-tRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I) | Electron microscopy | 2.8 | 2022-10-19 |
326 | 7NHN|1|D | Transfer RNA | RNA (5'-R(P*GP*AP*GP*GP*UP*NP*NP*NP*NP*NP*NP*AP*UP*G)-3'), tRNA-fMet | Listeria monocytogenes EGD-e | Bacteria | RF00005 | VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes | Electron microscopy | 2.9 | 2021-05-05 |
327 | 7TOR|1|PTRN | Transfer RNA | mRNA, tRNAfMet bound to E-site | Escherichia coli K-12 | Bacteria | RF00005 | Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20 | Electron microscopy | 2.9 | 2022-05-25 |
328 | 7MSC|1|y | Transfer RNA | initiator tRNA (Met), mRNA | Mycobacterium tuberculosis H37Rv | Bacteria | RF00005 | Mtb 70SIC in complex with MtbEttA at Pre_R0 state | Electron microscopy | 2.97 | 2022-02-02 |
329 | 8BUU|1|V | Transfer RNA | mRNA, tRNA-fMet | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00005 | ARE-ABCF VmlR2 bound to a 70S ribosome | Electron microscopy | 2.9 | 2023-04-05 |
330 | 5AFI|1|v | Transfer RNA | mRNA, P-site fMet-tRNAfMet | Escherichia coli | Bacteria | RF00005 | 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | Electron microscopy | 2.9 | 2015-03-11 |
331 | 5AFI|1|w | Transfer RNA | P-site fMet-tRNAfMet | Escherichia coli | Bacteria | RF00005 | 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | Electron microscopy | 2.9 | 2015-03-11 |
332 | 6WDE|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B) | Electron microscopy | 3 | 2020-07-01 |
333 | 7ST6|1|6 | Transfer RNA | mRNA, tRNA fMet | Escherichia coli K-12 | Bacteria | RF00005 | Pre translocation, non-rotated 70S ribosome (Structure I) | Electron microscopy | 3 | 2022-02-23 |
334 | 6H4N|1|w | Transfer RNA | tRNA | Escherichia coli | Bacteria | RF00005 | Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome | Electron microscopy | 3 | 2018-09-05 |
335 | 6WD0|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-A) | Electron microscopy | 3 | 2020-07-01 |
336 | 6WDE|1|6 | Transfer RNA | tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B) | Electron microscopy | 3 | 2020-07-01 |
337 | 6WD0|1|6 | Transfer RNA | tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-A) | Electron microscopy | 3 | 2020-07-01 |
338 | 7ST6|1|7 | Transfer RNA | mRNA, tRNA fMet | Escherichia coli K-12 | Bacteria | RF00005 | Pre translocation, non-rotated 70S ribosome (Structure I) | Electron microscopy | 3 | 2022-02-23 |
339 | 7UNU|1|v | Transfer RNA | mRNA, P-site initiator tRNA | Escherichia coli | Bacteria | RF00005 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B) | Electron microscopy | 2.9 | 2022-06-22 |
340 | 8SYL|1|x | Transfer RNA | M-F-Stop mRNA, P-site initiator tRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs | Electron microscopy | 2.9 | 2023-08-09 |
341 | 7UNR|1|v | Transfer RNA | mRNA, P-site initiator tRNA | Escherichia coli | Bacteria | RF00005 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A) | Electron microscopy | 2.9 | 2022-06-22 |
342 | 8B7Y|1|n | Transfer RNA | messenger RNA, P-tRNA fMet | Escherichia coli K-12 | Bacteria | RF00005 | Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B. | Electron microscopy | 3 | 2023-01-25 |
343 | 5H5U|1|5 | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Mechanistic insights into the alternative translation termination by ArfA and RF2 | Electron microscopy | 3.01 | 2017-01-25 |
344 | 8G61|1|Pt | Transfer RNA | mRNA, RNA (77-MER) | Escherichia coli | Bacteria | RF00005 | mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state) | Electron microscopy | 2.94 | 2023-04-19 |
345 | 7ZAG|1|4 | Transfer RNA | Met-tRNAiMET, mRNA | Pyrococcus abyssi GE5 | Archaea | RF00005 | Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA,mRNA, aIF1A and the C-terminal domain of aIF5B. | Electron microscopy | 2.77 | 2022-08-03 |
346 | 5J3C|1|XV | Transfer RNA | messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Thermus thermophilus 70S termination complex containing E. coli RF1 | X-ray diffraction | 3.04 | 2016-10-12 |
347 | 5WDT|1|v | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome-EF-Tu H84A complex with GppNHp | Electron microscopy | 3 | 2018-04-25 |
348 | 5WFS|1|v | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4) | Electron microscopy | 3 | 2018-05-02 |
349 | 5WDT|1|w | Transfer RNA | tRNA-fMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome-EF-Tu H84A complex with GppNHp | Electron microscopy | 3 | 2018-04-25 |
350 | 5WFS|1|w | Transfer RNA | tRNA-fMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4) | Electron microscopy | 3 | 2018-05-02 |
351 | 6OPE|1|XV | Transfer RNA | mRNA, P-site tRNAfMet | Escherichia coli | Bacteria | RF00005 | Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site | X-ray diffraction | 3.1 | 2020-06-24 |
352 | 6OPE|1|QV | Transfer RNA | mRNA, P-site tRNAfMet | Escherichia coli | Bacteria | RF00005 | Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site | X-ray diffraction | 3.1 | 2020-06-24 |
353 | 7TOQ|1|PTRN | Transfer RNA | RNA (5'-R(*CP*AP*CP*AP*UP*GP*UP*UP*CP*C)-3'), tRNAfMet | Escherichia coli K-12 | Bacteria | RF00005 | Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR | Electron microscopy | 3.1 | 2022-05-25 |
354 | 7MSZ|1|y | Transfer RNA | initiator tRNA (Met), mRNA | Mycobacterium tuberculosis H37Rv | Bacteria | RF00005 | Mtb 70SIC in complex with MtbEttA at Trans_R1 state | Electron microscopy | 3.1 | 2022-02-02 |
355 | 6ORE|1|5 | Transfer RNA | P-tRNA, RNA (5'-R(P*UP*UP*CP*UP*UP*CP*UP*AP*A)-3') | Escherichia coli | Bacteria | RF00005 | Release complex 70S | Electron microscopy | 2.9 | 2019-06-19 |
356 | 5J3C|1|QV | Transfer RNA | messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Thermus thermophilus 70S termination complex containing E. coli RF1 | X-ray diffraction | 3.04 | 2016-10-12 |
357 | 6OTR|1|XV | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU) | X-ray diffraction | 3.12 | 2019-08-21 |
358 | 6OTR|1|QV | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU) | X-ray diffraction | 3.12 | 2019-08-21 |
359 | 6OTR|1|QW | Transfer RNA | tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU) | X-ray diffraction | 3.12 | 2019-08-21 |
360 | 6X7K|1|A | Transfer RNA | E-site and P-site tRNA (fMet) | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site | Electron microscopy | 3.1 | 2020-09-02 |
361 | 6X7K|1|B | Transfer RNA | E-site and P-site tRNA (fMet), mRNA with 24 nt long spacer | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site | Electron microscopy | 3.1 | 2020-09-02 |
362 | 6ORD|1|QV | Transfer RNA | mRNA, P-site tRNAfMet | Escherichia coli | Bacteria | RF00005 | Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site | X-ray diffraction | 3.1 | 2020-06-24 |
363 | 5MDV|1|5 | Transfer RNA | fMet-NH-tRNA(fMet), mRNA | Escherichia coli | Bacteria | RF00005 | Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state) | Electron microscopy | 2.97 | 2016-12-14 |
364 | 6OTR|1|XW | Transfer RNA | tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU) | X-ray diffraction | 3.12 | 2019-08-21 |
365 | 6ORD|1|XV | Transfer RNA | mRNA, P-site tRNAfMet | Escherichia coli | Bacteria | RF00005 | Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site | X-ray diffraction | 3.1 | 2020-06-24 |
366 | 6BZ6|1|QV | Transfer RNA | messenger RNA, tRNA fMet | Escherichia coli | Bacteria | RF00005 | Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site | X-ray diffraction | 3.18 | 2018-11-14 |
367 | 6ZTP|1|AW | Transfer RNA | mRNA, tRNA(fmet) P-site | Escherichia coli | Bacteria | RF00005 | E. coli 70S-RNAP expressome complex in uncoupled state 6 | Electron microscopy | 3 | 2020-09-16 |
368 | 6ZU1|1|AW | Transfer RNA | mRNA, tRNA(fmet) P-site | Escherichia coli | Bacteria | RF00005 | E. coli 70S-RNAP expressome complex in uncoupled state 2 | Electron microscopy | 3 | 2020-09-16 |
369 | 6ZTO|1|AW | Transfer RNA | mRNA, tRNA(fmet) P-site | Escherichia coli | Bacteria | RF00005 | E. coli 70S-RNAP expressome complex in uncoupled state 1 | Electron microscopy | 3 | 2020-09-23 |
370 | 7NHL|1|D | Transfer RNA | P-tRNA fMet, RNA (5'-R(P*GP*GP*AP*GP*GP*UP*AP*UP*G)-3') | Staphylococcus aureus subsp. aureus NCTC 8325 | Bacteria | RF00005 | VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus | Electron microscopy | 3.1 | 2021-05-05 |
371 | 5WE4|1|v | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome-EF-Tu wt complex with GppNHp | Electron microscopy | 3.1 | 2018-04-25 |
372 | 7PJY|1|v | Transfer RNA | mRNA, P-site tRNA(fMet) | Escherichia coli K-12 | Bacteria | RF00005 | Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 1 (CHI1-EF-G-GDP) | Electron microscopy | 3.1 | 2021-10-20 |
373 | 7PJV|1|v | Transfer RNA | mRNA, P-site tRNA(fMet) | Escherichia coli K-12 | Bacteria | RF00005 | Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP-Pi) | Electron microscopy | 3.1 | 2021-10-20 |
374 | 5WE4|1|w | Transfer RNA | tRNA-fMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome-EF-Tu wt complex with GppNHp | Electron microscopy | 3.1 | 2018-04-25 |
375 | 7NBU|1|V | Transfer RNA | cspA mRNA, P-site fMet-tRNA(fMet) | Escherichia coli K-12 | Bacteria | RF00005 | Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome. | Electron microscopy | 3.11 | 2022-03-02 |
376 | 5U9G|1|W | Transfer RNA | fMet-tRNA (P- and E-site), truncated mRNA | Escherichia coli | Bacteria | RF00005 | 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I) | Electron microscopy | 3.2 | 2017-03-22 |
377 | 7K53|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli K-12 | Bacteria | RF00005 | Pre-translocation +1-frameshifting(CCC-A) complex (Structure I-FS) | Electron microscopy | 3.2 | 2021-07-28 |
378 | 6WNW|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA | Electron microscopy | 3.2 | 2020-06-24 |
379 | 5UYM|1|W | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III) | Electron microscopy | 3.2 | 2017-06-07 |
380 | 5U9F|1|W | Transfer RNA | fMet-tRNA (P- and E-site), truncated mRNA | Escherichia coli | Bacteria | RF00005 | 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II) | Electron microscopy | 3.2 | 2017-03-22 |
381 | 7ST7|1|6 | Transfer RNA | mRNA, tRNA fMet | Escherichia coli K-12 | Bacteria | RF00005 | Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio) | Electron microscopy | 3.2 | 2022-02-23 |
382 | 7K54|1|6 | Transfer RNA | tRNAfMet | Escherichia coli K-12 | Bacteria | RF00005 | Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS) | Electron microscopy | 3.2 | 2021-07-28 |
383 | 6WDD|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-A) | Electron microscopy | 3.2 | 2020-07-01 |
384 | 5UQ8|1|y | Transfer RNA | P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation) | Electron microscopy | 3.2 | 2018-03-07 |
385 | 5U9G|1|X | Transfer RNA | fMet-tRNA (P- and E-site) | Escherichia coli | Bacteria | RF00005 | 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I) | Electron microscopy | 3.2 | 2017-03-22 |
386 | 5U9F|1|X | Transfer RNA | fMet-tRNA (P- and E-site) | Escherichia coli | Bacteria | RF00005 | 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II) | Electron microscopy | 3.2 | 2017-03-22 |
387 | 5UYM|1|X | Transfer RNA | tRNAfMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III) | Electron microscopy | 3.2 | 2017-06-07 |
388 | 7LV0|1|6 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli K-12 | Bacteria | RF00005 | Pre-translocation rotated ribosome +1-frameshifting(CCC-A) complex (Structure Irot-FS) | Electron microscopy | 3.2 | 2021-07-28 |
389 | 7SSN|1|6 | Transfer RNA | mRNA, tRNA fMet | Escherichia coli K-12 | Bacteria | RF00005 | Pre translocation 70S ribosome with A/P* and P/E tRNA (Structure II-B) | Electron microscopy | 3.2 | 2022-02-23 |
390 | 7K53|1|6 | Transfer RNA | tRNAfMet | Escherichia coli K-12 | Bacteria | RF00005 | Pre-translocation +1-frameshifting(CCC-A) complex (Structure I-FS) | Electron microscopy | 3.2 | 2021-07-28 |
391 | 7SSO|1|6 | Transfer RNA | mRNA, tRNA fMet | Escherichia coli K-12 | Bacteria | RF00005 | Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A) | Electron microscopy | 3.2 | 2022-02-23 |
392 | 5MDW|1|5 | Transfer RNA | fMet-NH-tRNA(fMet), mRNA | Escherichia coli | Bacteria | RF00005 | Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state) | Electron microscopy | 3.06 | 2016-12-14 |
393 | 6BZ6|1|XV | Transfer RNA | messenger RNA, tRNA fMet | Escherichia coli | Bacteria | RF00005 | Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site | X-ray diffraction | 3.18 | 2018-11-14 |
394 | 6X6T|1|A | Transfer RNA | E-site and P-site tRNA (fMet) | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B1 (TTC-B1) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site | Electron microscopy | 3.2 | 2020-09-02 |
395 | 6X6T|1|B | Transfer RNA | E-site and P-site tRNA (fMet), mRNA with 24 nt long spacer | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B1 (TTC-B1) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site | Electron microscopy | 3.2 | 2020-09-02 |
396 | 6OJ2|1|QV | Transfer RNA | mRNA, P-site tRNAfMet | Escherichia coli | Bacteria | RF00005 | Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site | X-ray diffraction | 3.2 | 2020-06-24 |
397 | 6OF6|1|XV | Transfer RNA | mRNA, P-site tRNAfMet | Escherichia coli | Bacteria | RF00005 | Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site | X-ray diffraction | 3.2 | 2020-06-24 |
398 | 6WDD|1|6 | Transfer RNA | tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-A) | Electron microscopy | 3.2 | 2020-07-01 |
399 | 6C4I|1|y | Transfer RNA | E-site or P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Conformation of methylated GGQ in the peptidyl transferase center during translation termination | Electron microscopy | 3.24 | 2018-02-21 |
400 | 6C4I|1|x | Transfer RNA | E-site or P-site tRNA fMet, mRNA | Escherichia coli | Bacteria | RF00005 | Conformation of methylated GGQ in the peptidyl transferase center during translation termination | Electron microscopy | 3.24 | 2018-02-21 |
401 | 6OXA|1|XV | Transfer RNA | mRNA, P-site tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU) | X-ray diffraction | 3.25 | 2019-08-21 |
402 | 6OXA|1|QW | Transfer RNA | P-site tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU) | X-ray diffraction | 3.25 | 2019-08-21 |
403 | 8BHN|1|4 | Transfer RNA | Deacylated P-site tRNA(fMet), mRNA | Escherichia coli K-12 | Bacteria | RF00005 | Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site | Electron microscopy | 2.85 | 2023-08-16 |
404 | 7MSH|1|y | Transfer RNA | initiator tRNA (Met), mRNA | Mycobacterium tuberculosis H37Rv | Bacteria | RF00005 | Mtb 70SIC in complex with MtbEttA at Pre_R1 state | Electron microscopy | 3.23 | 2022-02-02 |
405 | 5J30|1|QV | Transfer RNA | messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Thermus thermophilus 70S termination complex containing E. coli RF1 | X-ray diffraction | 3.2 | 2016-10-12 |
406 | 5J30|1|XV | Transfer RNA | messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Thermus thermophilus 70S termination complex containing E. coli RF1 | X-ray diffraction | 3.2 | 2016-10-12 |
407 | 6OF6|1|QV | Transfer RNA | mRNA, P-site tRNAfMet | Escherichia coli | Bacteria | RF00005 | Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site | X-ray diffraction | 3.2 | 2020-06-24 |
408 | 6OJ2|1|XV | Transfer RNA | mRNA, P-site tRNAfMet | Escherichia coli | Bacteria | RF00005 | Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site | X-ray diffraction | 3.2 | 2020-06-24 |
409 | 5MDZ|1|5 | Transfer RNA | fMet-NH-tRNA(fMet), mRNA | Escherichia coli | Bacteria | RF00005 | Structure of the 70S ribosome (empty A site) | Electron microscopy | 3.1 | 2016-12-14 |
410 | 7ZAI|1|4 | Transfer RNA | mRNA, tRNA-MET | Pyrococcus abyssi GE5 | Archaea | RF00005 | Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA, mRNA and aIF1A. | Electron microscopy | 2.6 | 2022-07-13 |
411 | 7JT1|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli K-12 | Bacteria | RF00005 | 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound (+9-III) | Electron microscopy | 3.3 | 2020-11-11 |
412 | 7K55|1|6 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli K-12 | Bacteria | RF00005 | Near post-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure III-FS) | Electron microscopy | 3.3 | 2021-07-28 |
413 | 7SSD|1|6 | Transfer RNA | mRNA, tRNA fMet | Escherichia coli K-12 | Bacteria | RF00005 | Mid translocation intermediate with EF-G bound with GDP (Structure IV) | Electron microscopy | 3.3 | 2022-02-23 |
414 | 8AP4|1|Z | Transfer RNA | P-tRNA | Escherichia coli K-12 | Bacteria | RF00005 | Structure of Escherischia coli heat shock protein Hsp15 in complex with ribosomal 50S subunits bearing peptidyl-tRNA | Electron microscopy | 3 | 2022-11-16 |
415 | 6OXA|1|QV | Transfer RNA | mRNA, P-site tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU) | X-ray diffraction | 3.25 | 2019-08-21 |
416 | 2FMT|1|D | FORMYL-METHIONYL-TRNAFMET2 | synthetic construct | METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMET | X-ray diffraction | 2.8 | 1999-07-29 | |||
417 | 6WD1|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-B) | Electron microscopy | 3.3 | 2020-07-01 |
418 | 6YEF|1|x | Transfer RNA | E-site tRNA, mRNA | Escherichia coli DH5[alpha] | Bacteria | RF00005 | 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus | Electron microscopy | 3.2 | 2021-01-27 |
419 | 2FMT|1|C | FORMYL-METHIONYL-TRNAFMET2 | synthetic construct | METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMET | X-ray diffraction | 2.8 | 1999-07-29 | |||
420 | 6OFX|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Non-rotated ribosome (Structure I) | Electron microscopy | 3.3 | 2019-09-25 |
421 | 6WDG|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-B) | Electron microscopy | 3.3 | 2020-07-01 |
422 | 6OXA|1|XW | Transfer RNA | P-site tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU) | X-ray diffraction | 3.25 | 2019-08-21 |
423 | 7K50|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli K-12 | Bacteria | RF00005 | Pre-translocation non-frameshifting(CCA-A) complex (Structure I) | Electron microscopy | 3.4 | 2021-07-28 |
424 | 7K52|1|6 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli K-12 | Bacteria | RF00005 | Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III) | Electron microscopy | 3.4 | 2021-07-28 |
425 | 5ZEB|1|v | Transfer RNA | P-tRNAfMet | Escherichia coli | Bacteria | RF00005 | M. Smegmatis P/P state 70S ribosome structure | Electron microscopy | 3.4 | 2018-09-26 |
426 | 7K50|1|6 | Transfer RNA | tRNAfMet | Escherichia coli K-12 | Bacteria | RF00005 | Pre-translocation non-frameshifting(CCA-A) complex (Structure I) | Electron microscopy | 3.4 | 2021-07-28 |
427 | 5ZEP|1|w | Transfer RNA | E-tRNAfMet | Escherichia coli | Bacteria | RF00005 | M. smegmatis hibernating state 70S ribosome structure | Electron microscopy | 3.4 | 2018-09-26 |
428 | 6WDF|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-A) | Electron microscopy | 3.3 | 2020-07-01 |
429 | 6OG7|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | 70S termination complex with RF2 bound to the UGA codon. Non-rotated ribosome with RF2 bound (Structure II) | Electron microscopy | 3.3 | 2019-09-25 |
430 | 8A3L|1|W | Transfer RNA | E-site tRNA | Escherichia coli K-12 | Bacteria | RF00005 | Structural insights into the binding of bS1 to the ribosome | Electron microscopy | 3.42 | 2023-05-10 |
431 | 3JCE|1|8 | mRNA, tRNA | synthetic construct | Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4) | Electron microscopy | 3.2 | 2016-01-13 | |||
432 | 6OGI|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | 70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V) | Electron microscopy | 3.4 | 2019-09-25 |
433 | 7ZHG|1|4 | Transfer RNA | Met-tRNAiMet, mRNA | Pyrococcus abyssi GE5 | Archaea | RF00005 | High-resolution cryo-EM structure of Pyrococcus abyssi 30S ribosomal subunit bound to mRNA and initiator tRNA anticodon stem-loop | Electron microscopy | 2.25 | 2022-06-29 |
434 | 5LZD|1|v | Transfer RNA | fMet-tRNAfMet | Escherichia coli | Bacteria | RF00005 | Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA) | Electron microscopy | 3.4 | 2016-11-23 |
435 | 5WE6|1|v | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome-EF-Tu H84A complex with GTP and cognate tRNA | Electron microscopy | 3.4 | 2018-04-25 |
436 | 5WFK|1|v | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3) | Electron microscopy | 3.4 | 2018-05-02 |
437 | 5WFK|1|w | Transfer RNA | tRNA-fMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3) | Electron microscopy | 3.4 | 2018-05-02 |
438 | 5WE6|1|w | Transfer RNA | tRNA-fMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome-EF-Tu H84A complex with GTP and cognate tRNA | Electron microscopy | 3.4 | 2018-04-25 |
439 | 5MDY|1|5 | Transfer RNA | fMet-NH-tRNA(fMet), mRNA | Escherichia coli | Bacteria | RF00005 | Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state) | Electron microscopy | 3.35 | 2016-12-21 |
440 | 6BU8|1|X | Transfer RNA | tRNAfMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome with S1 domains 1 and 2 (Class 1) | Electron microscopy | 3.5 | 2018-01-31 |
441 | 7JT2|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli K-12 | Bacteria | RF00005 | 70S ribosome stalled on long mRNA with ArfB bound in the A site | Electron microscopy | 3.5 | 2020-11-11 |
442 | 6BU8|1|W | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome with S1 domains 1 and 2 (Class 1) | Electron microscopy | 3.5 | 2018-01-31 |
443 | 5U4I|1|y | Transfer RNA | P-site or E-site fMet-tRNA(fMet) | Escherichia coli | Bacteria | RF00005 | Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome | Electron microscopy | 3.5 | 2017-01-11 |
444 | 5UQ7|1|y | Transfer RNA | P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation) | Electron microscopy | 3.5 | 2018-03-07 |
445 | 7K51|1|6 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli K-12 | Bacteria | RF00005 | Mid-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure II) | Electron microscopy | 3.5 | 2021-07-28 |
446 | 5U4I|1|x | Transfer RNA | mRNA, P-site or E-site fMet-tRNA(fMet) | Escherichia coli | Bacteria | RF00005 | Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome | Electron microscopy | 3.5 | 2017-01-11 |
447 | 8A3L|1|V | Transfer RNA | P-site fMet-tRNA(fMet) | Escherichia coli K-12 | Bacteria | RF00005 | Structural insights into the binding of bS1 to the ribosome | Electron microscopy | 3.42 | 2023-05-10 |
448 | 6X7F|1|A | Transfer RNA | E-site and P-site tRNA (fMet) | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B2 (TTC-B2) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site | Electron microscopy | 3.5 | 2020-09-02 |
449 | 6X7F|1|B | Transfer RNA | E-site and P-site tRNA (fMet), mRNA with 24 nt long spacer | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B2 (TTC-B2) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site | Electron microscopy | 3.5 | 2020-09-02 |
450 | 6OXI|1|XV | Transfer RNA | mRNA, P-site tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA) | X-ray diffraction | 3.49 | 2019-08-21 |
451 | 6OXI|1|QV | Transfer RNA | mRNA, P-site tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA) | X-ray diffraction | 3.49 | 2019-08-21 |
452 | 6BUW|1|XV | Transfer RNA | messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site. | X-ray diffraction | 3.5 | 2018-11-14 |
453 | 6WDK|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A2) | Electron microscopy | 3.6 | 2020-07-08 |
454 | 6WDK|1|6 | Transfer RNA | tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A2) | Electron microscopy | 3.6 | 2020-07-08 |
455 | 6WDM|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-B2) | Electron microscopy | 3.6 | 2020-07-01 |
456 | 6WD3|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B1) | Electron microscopy | 3.6 | 2020-07-08 |
457 | 5UYL|1|X | Transfer RNA | tRNAfMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II) | Electron microscopy | 3.6 | 2017-06-14 |
458 | 6WD2|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-A) | Electron microscopy | 3.6 | 2020-07-08 |
459 | 6WDM|1|6 | Transfer RNA | tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-B2) | Electron microscopy | 3.6 | 2020-07-01 |
460 | 5UYL|1|W | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II) | Electron microscopy | 3.6 | 2017-06-14 |
461 | 6WD5|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-C1) | Electron microscopy | 3.6 | 2020-07-08 |
462 | 6ZTJ|1|AW | Transfer RNA | mRNA, tRNA(fmet) P-site | Escherichia coli | Bacteria | RF00005 | E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA) | Electron microscopy | 3.4 | 2020-09-16 |
463 | 6ZTM|1|AW | Transfer RNA | mRNA, tRNA(fmet) P-site | Escherichia coli | Bacteria | RF00005 | E. coli 70S-RNAP expressome complex in collided state without NusG | Electron microscopy | 3.3 | 2020-09-16 |
464 | 6WD5|1|6 | Transfer RNA | tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-C1) | Electron microscopy | 3.6 | 2020-07-08 |
465 | 6BUW|1|QV | Transfer RNA | messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site. | X-ray diffraction | 3.5 | 2018-11-14 |
466 | 6WD3|1|6 | Transfer RNA | tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B1) | Electron microscopy | 3.6 | 2020-07-08 |
467 | 5LZA|1|v | Transfer RNA | fMet-tRNAfMet, SECIS mRNA | Escherichia coli | Bacteria | RF00005 | Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC) | Electron microscopy | 3.6 | 2016-11-23 |
468 | 5WF0|1|v | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2) | Electron microscopy | 3.6 | 2018-05-02 |
469 | 5WF0|1|w | Transfer RNA | tRNA-fMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2) | Electron microscopy | 3.6 | 2018-05-02 |
470 | 7JSZ|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli K-12 | Bacteria | RF00005 | ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV) | Electron microscopy | 3.7 | 2020-11-11 |
471 | 6WDJ|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1) | Electron microscopy | 3.7 | 2020-07-01 |
472 | 6WD6|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-C2) | Electron microscopy | 3.7 | 2020-07-08 |
473 | 6WDL|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-B1) | Electron microscopy | 3.7 | 2020-07-01 |
474 | 7JSS|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli K-12 | Bacteria | RF00005 | ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II) | Electron microscopy | 3.7 | 2020-11-11 |
475 | 6WD8|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-A) | Electron microscopy | 3.7 | 2020-07-08 |
476 | 6WDL|1|6 | Transfer RNA | tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-B1) | Electron microscopy | 3.7 | 2020-07-01 |
477 | 6WD8|1|6 | Transfer RNA | tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-A) | Electron microscopy | 3.7 | 2020-07-08 |
478 | 6WDJ|1|6 | Transfer RNA | tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1) | Electron microscopy | 3.7 | 2020-07-01 |
479 | 6WD9|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-B) | Electron microscopy | 3.7 | 2020-07-08 |
480 | 6WD4|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B2) | Electron microscopy | 3.7 | 2020-07-08 |
481 | 6WD4|1|6 | Transfer RNA | tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B2) | Electron microscopy | 3.7 | 2020-07-08 |
482 | 5ZEU|1|v | Transfer RNA | P-tRNAfMet | Escherichia coli | Bacteria | RF00005 | M. smegmatis P/P state 30S ribosomal subunit | Electron microscopy | 3.7 | 2018-09-26 |
483 | 6WD2|1|6 | Transfer RNA | tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-A) | Electron microscopy | 3.6 | 2020-07-08 |
484 | 7JT3|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli K-12 | Bacteria | RF00005 | Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV) | Electron microscopy | 3.7 | 2020-11-11 |
485 | 6VYS|1|A | Transfer RNA | E-site and P-site tRNA (fMet) | Escherichia coli | Bacteria | RF00005 | Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site | Electron microscopy | 3.7 | 2020-09-02 |
486 | 6VYQ|1|A | Transfer RNA | E-site and P-site tRNA (fMet) | Escherichia coli | Bacteria | RF00005 | Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site | Electron microscopy | 3.7 | 2020-09-02 |
487 | 6XDQ|1|A | Transfer RNA | E-site and P-site tRNA (fMet) | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 30 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site | Electron microscopy | 3.7 | 2020-09-02 |
488 | 6VU3|1|A | Transfer RNA | E-site and A-site tRNA (fMet) | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer | Electron microscopy | 3.7 | 2020-09-02 |
489 | 6VYS|1|B | Transfer RNA | E-site and P-site tRNA (fMet), mRNA with 21 nt long spacer | Escherichia coli | Bacteria | RF00005 | Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site | Electron microscopy | 3.7 | 2020-09-02 |
490 | 6VYQ|1|B | Transfer RNA | E-site and P-site tRNA (fMet), mRNA with 15 nt long spacer | Escherichia coli | Bacteria | RF00005 | Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site | Electron microscopy | 3.7 | 2020-09-02 |
491 | 6XDQ|1|B | Transfer RNA | E-site and P-site tRNA (fMet), mRNA with 30 nt long spacer | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 30 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site | Electron microscopy | 3.7 | 2020-09-02 |
492 | 6VU3|1|B | Transfer RNA | E-site and A-site tRNA (fMet), mRNA with 12 nt long spacer | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer | Electron microscopy | 3.7 | 2020-09-02 |
493 | 6WD9|1|6 | Transfer RNA | tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-B) | Electron microscopy | 3.7 | 2020-07-08 |
494 | 6DNC|1|D | Transfer RNA | tRNA(fMet) | Escherichia coli | Bacteria | RF00005 | E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon | Electron microscopy | 3.7 | 2018-07-04 |
495 | 6DNC|1|LA | Transfer RNA | mRNA, tRNA(fMet) | Escherichia coli | Bacteria | RF00005 | E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon | Electron microscopy | 3.7 | 2018-07-04 |
496 | 6WD6|1|6 | Transfer RNA | tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-C2) | Electron microscopy | 3.7 | 2020-07-08 |
497 | 6OSQ|1|5 | Transfer RNA | mRNA, P-tRNA | Escherichia coli | Bacteria | RF00005 | RF1 accommodated state bound Release complex 70S at long incubation time point | Electron microscopy | 3.5 | 2019-06-26 |
498 | 6OSK|1|5 | Transfer RNA | mRNA, P-tRNA | Escherichia coli | Bacteria | RF00005 | RF1 accommodated 70S complex at 60 ms | Electron microscopy | 3.6 | 2019-06-26 |
499 | 6SWC|1|4 | Transfer RNA | initiator Met-tRNA fMet from E. coli (A1U72 variant), mRNA | Escherichia coli | Bacteria | RF00005 | IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi | Electron microscopy | 3.3 | 2020-02-19 |
500 | 7ZKI|1|4 | Transfer RNA | Met-tRNAiMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of aIF1A:aIF5B:Met-tRNAiMet complex from a Pyrococcus abyssi 30S initiation complex | Electron microscopy | 3.6 | 2022-07-20 |
501 | 5L3P|1|x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex | Electron microscopy | 3.7 | 2016-07-20 |
502 | 3JCJ|1|v | Transfer RNA | messenger RNA, tRNA | Escherichia coli | Bacteria | RF00005 | Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association | Electron microscopy | 3.7 | 2016-03-09 |
503 | 6BZ7|1|XV | Transfer RNA | ASL Leu, messenger RNA, tRNA fMet | Escherichia coli | Bacteria | RF00005 | Thermus thermophilus 70S containing 16S G299A point mutation and near-cognate ASL Leucine in A site. | X-ray diffraction | 3.68 | 2018-11-14 |
504 | 6Q95|1|7 | Transfer RNA | mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome | Electron microscopy | 3.7 | 2019-02-27 |
505 | 6WDA|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C) | Electron microscopy | 3.8 | 2020-07-08 |
506 | 7JSW|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli K-12 | Bacteria | RF00005 | ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III) | Electron microscopy | 3.8 | 2020-11-11 |
507 | 5UYQ|1|X | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc) | Electron microscopy | 3.8 | 2017-06-07 |
508 | 6GXM|1|x | Transfer RNA | fMet-tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II) | Electron microscopy | 3.8 | 2018-08-22 |
509 | 5UYQ|1|W | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc) | Electron microscopy | 3.8 | 2017-06-07 |
510 | 6GWT|1|x | Transfer RNA | fMet-tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State I) | Electron microscopy | 3.8 | 2018-08-15 |
511 | 6WDA|1|6 | Transfer RNA | tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C) | Electron microscopy | 3.8 | 2020-07-08 |
512 | 7SSW|1|6 | Transfer RNA | mRNA, tRNA fMet | Escherichia coli K-12 | Bacteria | RF00005 | Late translocation intermediate with EF-G dissociated (Structure VI) | Electron microscopy | 3.8 | 2022-02-23 |
513 | 7SSL|1|6 | Transfer RNA | mRNA, tRNA fMet | Escherichia coli K-12 | Bacteria | RF00005 | Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III) | Electron microscopy | 3.8 | 2022-02-23 |
514 | 6BZ8|1|QV | Transfer RNA | ASL Leu, messenger RNA, tRNA fMet | Escherichia coli | Bacteria | RF00005 | Thermus thermophilus 70S containing 16S G347U point mutation and near-cognate ASL Leucine in A site | X-ray diffraction | 3.74 | 2018-11-14 |
515 | 6BZ8|1|XV | Transfer RNA | ASL Leu, messenger RNA, tRNA fMet | Escherichia coli | Bacteria | RF00005 | Thermus thermophilus 70S containing 16S G347U point mutation and near-cognate ASL Leucine in A site | X-ray diffraction | 3.74 | 2018-11-14 |
516 | 6YSI|1|8+ 6YSI|1|6 | Transfer RNA + Transfer RNA | E-site tRNA | Acinetobacter baumannii | Bacteria | RF00005 + RF00005 | Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit | Electron microscopy | 2.5 | 2020-09-16 |
517 | 6ORL|1|5 | Transfer RNA | mRNA, P-tRNA | Escherichia coli | Bacteria | RF00005 | RF1 pre-accommodated 70S complex at 24 ms | Electron microscopy | 3.5 | 2019-06-19 |
518 | 6VYR|1|A | Transfer RNA | E-site and P-site tRNA (fMet) | Escherichia coli | Bacteria | RF00005 | Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site | Electron microscopy | 3.8 | 2020-09-02 |
519 | 6VYR|1|B | Transfer RNA | E-site and P-site tRNA (fMet), mRNA with 18 nt long spacer | Escherichia coli | Bacteria | RF00005 | Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site | Electron microscopy | 3.8 | 2020-09-02 |
520 | 6NDK|1|XV | Transfer RNA | A-site ASLSufA6 A37.5, mRNA, P-site tRNAfMet | Escherichia coli | Bacteria | RF00005 | Structure of ASLSufA6 A37.5 bound to the 70S A site | X-ray diffraction | 3.64 | 2019-02-27 |
521 | 6BZ7|1|QV | Transfer RNA | ASL Leu, messenger RNA, tRNA fMet | Escherichia coli | Bacteria | RF00005 | Thermus thermophilus 70S containing 16S G299A point mutation and near-cognate ASL Leucine in A site. | X-ray diffraction | 3.68 | 2018-11-14 |
522 | 5KPW|1|31 | Transfer RNA | mRNA, P-site tRNAfMet | Escherichia coli | Bacteria | RF00005 | Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III) | Electron microscopy | 3.9 | 2016-09-28 |
523 | 5KPS|1|31 | Transfer RNA | mRNA, P site tRNAfmet | Escherichia coli | Bacteria | RF00005 | Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I) | Electron microscopy | 3.9 | 2016-09-28 |
524 | 5UYK|1|W | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I) | Electron microscopy | 3.9 | 2017-06-07 |
525 | 5UYP|1|W | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc) | Electron microscopy | 3.9 | 2017-06-07 |
526 | 6GXN|1|x | Transfer RNA | fMet-tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III) | Electron microscopy | 3.9 | 2018-08-15 |
527 | 6WD7|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-D) | Electron microscopy | 3.9 | 2020-07-08 |
528 | 5UYK|1|X | Transfer RNA | tRNAfMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I) | Electron microscopy | 3.9 | 2017-06-07 |
529 | 5UYP|1|X | Transfer RNA | tRNAfMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc) | Electron microscopy | 3.9 | 2017-06-07 |
530 | 7SS9|1|6 | Transfer RNA | mRNA, tRNA fMet | Escherichia coli K-12 | Bacteria | RF00005 | Late translocation intermediate with EF-G partially dissociated (Structure V) | Electron microscopy | 3.9 | 2022-02-23 |
531 | 6GXO|1|x | Transfer RNA | fMet-tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV) | Electron microscopy | 3.9 | 2018-08-15 |
532 | 6NDK|1|QV | Transfer RNA | A-site ASLSufA6 A37.5, mRNA, P-site tRNAfMet | Escherichia coli | Bacteria | RF00005 | Structure of ASLSufA6 A37.5 bound to the 70S A site | X-ray diffraction | 3.64 | 2019-02-27 |
533 | 5KPX|1|31 | Transfer RNA | mRNA, P-site tRNAfMet | Escherichia coli | Bacteria | RF00005 | Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV) | Electron microscopy | 3.9 | 2016-09-28 |
534 | 6WD7|1|6 | Transfer RNA | tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-D) | Electron microscopy | 3.9 | 2020-07-08 |
535 | 5KPS|1|32 | Transfer RNA | E-site tRNAfMet | Escherichia coli | Bacteria | RF00005 | Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I) | Electron microscopy | 3.9 | 2016-09-28 |
536 | 6OGF|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | 70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III). | Electron microscopy | 3.9 | 2019-09-25 |
537 | 3J9Y|1|v | Transfer RNA | mRNA, P-site fMet-tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome | Electron microscopy | 3.9 | 2015-04-15 |
538 | 5UYN|1|X | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc) | Electron microscopy | 4 | 2017-06-07 |
539 | 5UYN|1|W | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | 70S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc) | Electron microscopy | 4 | 2017-06-07 |
540 | 6WDI|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure IV-B2) | Electron microscopy | 4 | 2020-07-01 |
541 | 6WDB|1|5 | Transfer RNA | mRNA, tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-A) | Electron microscopy | 4 | 2020-07-01 |
542 | 6WDI|1|6 | Transfer RNA | tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure IV-B2) | Electron microscopy | 4 | 2020-07-01 |
543 | 6O9K|1|y | Transfer RNA | mRNA, tRNA | Escherichia coli | Bacteria | RF00005 | 70S initiation complex | Electron microscopy | 4 | 2019-05-29 |
544 | 5IQR|1|5 | Transfer RNA | mRNA, P-site fMet-tRNA(fMet) | Escherichia coli | Bacteria | RF00005 | Structure of RelA bound to the 70S ribosome | Electron microscopy | 3 | 2016-05-04 |
545 | 6BZ7|1|XW | Transfer RNA | tRNA fMet | Escherichia coli | Bacteria | RF00005 | Thermus thermophilus 70S containing 16S G299A point mutation and near-cognate ASL Leucine in A site. | X-ray diffraction | 3.68 | 2018-11-14 |
546 | 6WDB|1|6 | Transfer RNA | tRNAfMet | Escherichia coli | Bacteria | RF00005 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-A) | Electron microscopy | 4 | 2020-07-01 |
547 | 5KPW|1|32 | Transfer RNA | E-site tRNAfMet | Escherichia coli | Bacteria | RF00005 | Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III) | Electron microscopy | 3.9 | 2016-09-28 |
548 | 6OUO|1|5 | Transfer RNA | mRNA, P-tRNA | Escherichia coli | Bacteria | RF00005 | RF2 accommodated state bound 70S complex at long incubation time | Electron microscopy | 3.7 | 2019-06-19 |
549 | 6BZ8|1|XW | Transfer RNA | tRNA fMet | Escherichia coli | Bacteria | RF00005 | Thermus thermophilus 70S containing 16S G347U point mutation and near-cognate ASL Leucine in A site | X-ray diffraction | 3.74 | 2018-11-14 |
550 | 6BZ7|1|QW | Transfer RNA | tRNA fMet | Escherichia coli | Bacteria | RF00005 | Thermus thermophilus 70S containing 16S G299A point mutation and near-cognate ASL Leucine in A site. | X-ray diffraction | 3.68 | 2018-11-14 |
551 | 7PJW|1|v | Transfer RNA | mRNA, P-site tRNA(fMet) | Escherichia coli | Bacteria | RF00005 | Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G-GDP-Pi) | Electron microscopy | 4 | 2021-10-20 |
552 | 6BZ8|1|QW | Transfer RNA | tRNA fMet | Escherichia coli | Bacteria | RF00005 | Thermus thermophilus 70S containing 16S G347U point mutation and near-cognate ASL Leucine in A site | X-ray diffraction | 3.74 | 2018-11-14 |
553 | 5KPX|1|32 | Transfer RNA | E-site tRNAfMet | Escherichia coli | Bacteria | RF00005 | Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV) | Electron microscopy | 3.9 | 2016-09-28 |
554 | 6ZTL|1|AW | Transfer RNA | mRNA, tRNA(fmet) P-site | Escherichia coli | Bacteria | RF00005 | E. coli 70S-RNAP expressome complex in collided state bound to NusG | Electron microscopy | 3.5 | 2020-09-16 |
555 | 6ZTN|1|AW | Transfer RNA | mRNA, tRNA(fmet) P-site | Escherichia coli | Bacteria | RF00005 | E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA) | Electron microscopy | 3.9 | 2020-09-16 |
556 | 6OT3|1|5 | Transfer RNA | mRNA, P-tRNA | Escherichia coli | Bacteria | RF00005 | RF2 accommodated state bound Release complex 70S at 24 ms | Electron microscopy | 3.9 | 2019-06-19 |
557 | 5LMU|1|Z | Transfer RNA | mRNA, tRNAi | Escherichia coli | Bacteria | RF00005 | Structure of bacterial 30S-IF3-mRNA-tRNA translation pre-initiation complex, closed form (state-4) | Electron microscopy | 4 | 2016-10-05 |
558 | 6YS5|1|7 | Transfer RNA | E-site tRNA, mRNA | Acinetobacter baumannii | Bacteria | RF00005 | Acinetobacter baumannii ribosome-amikacin complex - 30S subunit head | Electron microscopy | 3 | 2020-09-16 |
559 | 6YTF|1|7 | Transfer RNA | E-site tRNA, mRNA | Acinetobacter baumannii | Bacteria | RF00005 | Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit head | Electron microscopy | 3 | 2020-09-16 |
560 | 5U4J|1|x+ 5U4J|1|z | Transfer RNA | mRNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome | Electron microscopy | 3.7 | 2017-01-11 |
561 | 8FIZ|1|BB | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex) | Electron microscopy | 3.8 | 2023-03-29 |
Release history
Parents
Children
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
#S | View | PDB | Title | Method | Resolution | Length |
---|---|---|---|---|---|---|
1 | 6YSI|1|8+ 6YSI|1|6 | Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit | ELECTRON MICROSCOPY | 2.5 | 8 | |
2 | 7NHN|1|D | VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes | ELECTRON MICROSCOPY | 2.9 | 74 | |
3 | 7NHL|1|D | VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.1 | 73 | |
4 | 8BUU|1|V | ARE-ABCF VmlR2 bound to a 70S ribosome | ELECTRON MICROSCOPY | 2.9 | 73 | |
5 | 7P7R|1|D | PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state I | ELECTRON MICROSCOPY | 2.9 | 76 | |
6 | 6GXN|1|x | Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III) | ELECTRON MICROSCOPY | 3.9 | 77 | |
7 | 6GXM|1|x | Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II) | ELECTRON MICROSCOPY | 3.8 | 77 | |
8 | 6GWT|1|x | Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State I) | ELECTRON MICROSCOPY | 3.8 | 77 | |
9 | 7MSH|1|y | Mtb 70SIC in complex with MtbEttA at Pre_R1 state | ELECTRON MICROSCOPY | 3.23 | 75 | |
10 | 6WDB|1|5 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-A) | ELECTRON MICROSCOPY | 4 | 77 | |
11 | 6WDI|1|5 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure IV-B2) | ELECTRON MICROSCOPY | 4 | 77 | |
12 | 6WDD|1|5 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-A) | ELECTRON MICROSCOPY | 3.2 | 77 | |
13 | 7TOR|1|PTRN | Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20 | ELECTRON MICROSCOPY | 2.9 | 74 | |
14 | 6OFX|1|5 | Non-rotated ribosome (Structure I) | ELECTRON MICROSCOPY | 3.3 | 77 | |
15 | 7JSW|1|5 | ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III) | ELECTRON MICROSCOPY | 3.8 | 77 | |
16 | 7JSS|1|5 | ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II) | ELECTRON MICROSCOPY | 3.7 | 77 | |
17 | 7JSZ|1|5 | ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV) | ELECTRON MICROSCOPY | 3.7 | 77 | |
18 | 7JT1|1|5 | 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound (+9-III) | ELECTRON MICROSCOPY | 3.3 | 77 | |
19 | 7JT2|1|5 | 70S ribosome stalled on long mRNA with ArfB bound in the A site | ELECTRON MICROSCOPY | 3.5 | 77 | |
20 | 6OPE|1|XV | Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site | X-RAY DIFFRACTION | 3.1 | 77 | |
21 | 6OPE|1|QV | Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site | X-RAY DIFFRACTION | 3.1 | 77 | |
22 | 6ORD|1|QV | Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site | X-RAY DIFFRACTION | 3.1 | 77 | |
23 | 6OJ2|1|QV | Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site | X-RAY DIFFRACTION | 3.2 | 77 | |
24 | 6OJ2|1|XV | Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site | X-RAY DIFFRACTION | 3.2 | 77 | |
25 | 6ORD|1|XV | Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site | X-RAY DIFFRACTION | 3.1 | 77 | |
26 | 6OF6|1|QV | Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site | X-RAY DIFFRACTION | 3.2 | 77 | |
27 | 6OF6|1|XV | Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site | X-RAY DIFFRACTION | 3.2 | 77 | |
28 | 3JCE|1|8 | Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4) | ELECTRON MICROSCOPY | 3.2 | 77 | |
29 | 5H5U|1|5 | Mechanistic insights into the alternative translation termination by ArfA and RF2 | ELECTRON MICROSCOPY | 3.01 | 76 | |
30 | 7MT2|1|y | Mtb 70S initiation complex | ELECTRON MICROSCOPY | 2.76 | 77 | |
31 | 7KGB|1|y | CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9 | ELECTRON MICROSCOPY | 2.7 | 77 | |
32 | 7MT7|1|y | Mtb 70S with P and E site tRNAs | ELECTRON MICROSCOPY | 2.71 | 77 | |
33 | 4V5F|1|CV | The structure of the ribosome with elongation factor G trapped in the post-translocational state | X-RAY DIFFRACTION | 3.6 | 76 | |
34 | 4V5F|1|AV | The structure of the ribosome with elongation factor G trapped in the post-translocational state | X-RAY DIFFRACTION | 3.6 | 76 | |
35 | 4V5K|1|CV | Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome | X-RAY DIFFRACTION | 3.2 | 77 | |
36 | 7K50|1|5 | Pre-translocation non-frameshifting(CCA-A) complex (Structure I) | ELECTRON MICROSCOPY | 3.4 | 77 | |
37 | 7K53|1|5 | Pre-translocation +1-frameshifting(CCC-A) complex (Structure I-FS) | ELECTRON MICROSCOPY | 3.2 | 77 | |
38 | 5U9G|1|W | 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I) | ELECTRON MICROSCOPY | 3.2 | 77 | |
39 | 5U4I|1|x | Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome | ELECTRON MICROSCOPY | 3.5 | 77 | |
40 | 5KPS|1|31 | Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I) | ELECTRON MICROSCOPY | 3.9 | 77 | |
41 | 5KPW|1|31 | Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III) | ELECTRON MICROSCOPY | 3.9 | 77 | |
42 | 5KPX|1|31 | Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV) | ELECTRON MICROSCOPY | 3.9 | 77 | |
43 | 5UYK|1|W | 70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I) | ELECTRON MICROSCOPY | 3.9 | 77 | |
44 | 5UYN|1|W | 70S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc) | ELECTRON MICROSCOPY | 4 | 77 | |
45 | 5UYL|1|W | 70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II) | ELECTRON MICROSCOPY | 3.6 | 77 | |
46 | 6WDE|1|5 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B) | ELECTRON MICROSCOPY | 3 | 77 | |
47 | 6WDM|1|5 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-B2) | ELECTRON MICROSCOPY | 3.6 | 77 | |
48 | 6WDL|1|5 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-B1) | ELECTRON MICROSCOPY | 3.7 | 77 | |
49 | 6WDK|1|5 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A2) | ELECTRON MICROSCOPY | 3.6 | 77 | |
50 | 6WDJ|1|5 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1) | ELECTRON MICROSCOPY | 3.7 | 77 | |
51 | 6BU8|1|W | 70S ribosome with S1 domains 1 and 2 (Class 1) | ELECTRON MICROSCOPY | 3.5 | 77 | |
52 | 5UYM|1|W | 70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III) | ELECTRON MICROSCOPY | 3.2 | 77 | |
53 | 6WD0|1|5 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-A) | ELECTRON MICROSCOPY | 3 | 77 | |
54 | 6WD3|1|5 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B1) | ELECTRON MICROSCOPY | 3.6 | 77 | |
55 | 6WD2|1|5 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-A) | ELECTRON MICROSCOPY | 3.6 | 77 | |
56 | 6WD5|1|5 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-C1) | ELECTRON MICROSCOPY | 3.6 | 77 | |
57 | 6WD4|1|5 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B2) | ELECTRON MICROSCOPY | 3.7 | 77 | |
58 | 6WD6|1|5 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-C2) | ELECTRON MICROSCOPY | 3.7 | 77 | |
59 | 6WD9|1|5 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-B) | ELECTRON MICROSCOPY | 3.7 | 77 | |
60 | 6WDA|1|5 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C) | ELECTRON MICROSCOPY | 3.8 | 77 | |
61 | 6WD7|1|5 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-D) | ELECTRON MICROSCOPY | 3.9 | 77 | |
62 | 6WD8|1|5 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-A) | ELECTRON MICROSCOPY | 3.7 | 77 | |
63 | 5UYP|1|W | 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc) | ELECTRON MICROSCOPY | 3.9 | 77 | |
64 | 5UYQ|1|W | 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc) | ELECTRON MICROSCOPY | 3.8 | 77 | |
65 | 4V8J|1|AV | Crystal structure of the bacterial ribosome ram mutation G347U. | X-RAY DIFFRACTION | 3.9 | 77 | |
66 | 4V8J|1|CV | Crystal structure of the bacterial ribosome ram mutation G347U. | X-RAY DIFFRACTION | 3.9 | 77 | |
67 | 4V97|1|CV | Crystal structure of the bacterial ribosome ram mutation G299A. | X-RAY DIFFRACTION | 3.52 | 77 | |
68 | 4V97|1|AV | Crystal structure of the bacterial ribosome ram mutation G299A. | X-RAY DIFFRACTION | 3.52 | 77 | |
69 | 6BZ8|1|QV | Thermus thermophilus 70S containing 16S G347U point mutation and near-cognate ASL Leucine in A site | X-RAY DIFFRACTION | 3.74 | 77 | |
70 | 6BZ8|1|XV | Thermus thermophilus 70S containing 16S G347U point mutation and near-cognate ASL Leucine in A site | X-RAY DIFFRACTION | 3.74 | 77 | |
71 | 6BZ7|1|QV | Thermus thermophilus 70S containing 16S G299A point mutation and near-cognate ASL Leucine in A site. | X-RAY DIFFRACTION | 3.68 | 77 | |
72 | 6BZ7|1|XV | Thermus thermophilus 70S containing 16S G299A point mutation and near-cognate ASL Leucine in A site. | X-RAY DIFFRACTION | 3.68 | 77 | |
73 | 6BUW|1|XV | Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site. | X-RAY DIFFRACTION | 3.5 | 77 | |
74 | 6BZ6|1|QV | Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site | X-RAY DIFFRACTION | 3.18 | 77 | |
75 | 6BZ6|1|XV | Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site | X-RAY DIFFRACTION | 3.18 | 77 | |
76 | 6BUW|1|QV | Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site. | X-RAY DIFFRACTION | 3.5 | 77 | |
77 | 4V8Q|1|BV | Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 77 | |
78 | 4YPB|1|QV | Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon | X-RAY DIFFRACTION | 3.4 | 77 | |
79 | 4W4G|1|QV | Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon | X-RAY DIFFRACTION | 3.3 | 77 | |
80 | 4ZSN|1|QV | 70S-wild-type HigB toxin complex bound to a AAA lysine codon | X-RAY DIFFRACTION | 3.6 | 77 | |
81 | 4YZV|1|QV | Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon | X-RAY DIFFRACTION | 3.1 | 77 | |
82 | 4YZV|1|XV | Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon | X-RAY DIFFRACTION | 3.1 | 77 | |
83 | 4ZSN|1|XV | 70S-wild-type HigB toxin complex bound to a AAA lysine codon | X-RAY DIFFRACTION | 3.6 | 77 | |
84 | 4YPB|1|XV | Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon | X-RAY DIFFRACTION | 3.4 | 77 | |
85 | 4W4G|1|XV | Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon | X-RAY DIFFRACTION | 3.3 | 77 | |
86 | 4V67|1|CY | Crystal structure of a translation termination complex formed with release factor RF2. | X-RAY DIFFRACTION | 3 | 77 | |
87 | 4V67|1|AY | Crystal structure of a translation termination complex formed with release factor RF2. | X-RAY DIFFRACTION | 3 | 77 | |
88 | 5D8B|1|FD | Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch | X-RAY DIFFRACTION | 3.63 | 77 | |
89 | 5D8B|1|ED | Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch | X-RAY DIFFRACTION | 3.63 | 77 | |
90 | 5J30|1|QV | Thermus thermophilus 70S termination complex containing E. coli RF1 | X-RAY DIFFRACTION | 3.2 | 77 | |
91 | 5J3C|1|QV | Thermus thermophilus 70S termination complex containing E. coli RF1 | X-RAY DIFFRACTION | 3.04 | 77 | |
92 | 5DFE|1|QV | 70S termination complex containing E. coli RF2 | X-RAY DIFFRACTION | 3.1 | 77 | |
93 | 5CZP|1|QV | 70S termination complex containing E. coli RF2 | X-RAY DIFFRACTION | 3.3 | 77 | |
94 | 1VVJ|1|QV | Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome | X-RAY DIFFRACTION | 3.44 | 77 | |
95 | 4LFZ|1|QV | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin | X-RAY DIFFRACTION | 3.92 | 77 | |
96 | 4L71|1|QV | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome | X-RAY DIFFRACTION | 3.9 | 77 | |
97 | 1VVJ|1|XV | Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome | X-RAY DIFFRACTION | 3.44 | 77 | |
98 | 4LEL|1|QV | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCG-G on the Ribosome | X-RAY DIFFRACTION | 3.9 | 77 | |
99 | 4LFZ|1|XV | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin | X-RAY DIFFRACTION | 3.92 | 77 | |
100 | 4L71|1|XV | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome | X-RAY DIFFRACTION | 3.9 | 77 | |
101 | 4LEL|1|XV | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCG-G on the Ribosome | X-RAY DIFFRACTION | 3.9 | 77 | |
102 | 4LSK|1|QV | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome | X-RAY DIFFRACTION | 3.48 | 77 | |
103 | 4LSK|1|XV | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome | X-RAY DIFFRACTION | 3.48 | 77 | |
104 | 4LT8|1|QV | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome | X-RAY DIFFRACTION | 3.14 | 77 | |
105 | 4LNT|1|QV | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome | X-RAY DIFFRACTION | 2.94 | 77 | |
106 | 4P6F|1|QV | Crystal structure of the peptolide 12C bound to bacterial ribosome | X-RAY DIFFRACTION | 3.6 | 77 | |
107 | 4TUC|1|QV | Crystal structure of ASL-SufJ bound to Codon ACC-A on the Ribosome | X-RAY DIFFRACTION | 3.6 | 77 | |
108 | 4TUD|1|QV | Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome | X-RAY DIFFRACTION | 3.6 | 77 | |
109 | 4TUA|1|QV | Crystal structure of ASL-Thr bound to Codon ACC-A on the Ribosome | X-RAY DIFFRACTION | 3.6 | 77 | |
110 | 4TUB|1|QV | Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome | X-RAY DIFFRACTION | 3.6 | 77 | |
111 | 4LT8|1|XV | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome | X-RAY DIFFRACTION | 3.14 | 77 | |
112 | 4LNT|1|XV | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome | X-RAY DIFFRACTION | 2.94 | 77 | |
113 | 4P70|1|XV | Crystal Structure of Unmodified tRNA Proline (CGG) Bound to Codon CCG on the Ribosome | X-RAY DIFFRACTION | 3.68 | 77 | |
114 | 4TUB|1|XV | Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome | X-RAY DIFFRACTION | 3.6 | 77 | |
115 | 4TUA|1|XV | Crystal structure of ASL-Thr bound to Codon ACC-A on the Ribosome | X-RAY DIFFRACTION | 3.6 | 77 | |
116 | 4TUD|1|XV | Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome | X-RAY DIFFRACTION | 3.6 | 77 | |
117 | 4TUC|1|XV | Crystal structure of ASL-SufJ bound to Codon ACC-A on the Ribosome | X-RAY DIFFRACTION | 3.6 | 77 | |
118 | 4P6F|1|XV | Crystal structure of the peptolide 12C bound to bacterial ribosome | X-RAY DIFFRACTION | 3.6 | 77 | |
119 | 4P70|1|QV | Crystal Structure of Unmodified tRNA Proline (CGG) Bound to Codon CCG on the Ribosome | X-RAY DIFFRACTION | 3.68 | 77 | |
120 | 6NDK|1|QV | Structure of ASLSufA6 A37.5 bound to the 70S A site | X-RAY DIFFRACTION | 3.64 | 77 | |
121 | 6NDK|1|XV | Structure of ASLSufA6 A37.5 bound to the 70S A site | X-RAY DIFFRACTION | 3.64 | 77 | |
122 | 7LH5|1|CV | Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs | X-RAY DIFFRACTION | 3.27 | 77 | |
123 | 1VY7|1|CX | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-RAY DIFFRACTION | 2.8 | 71 | |
124 | 8G5Z|1|Pt | mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state) | ELECTRON MICROSCOPY | 2.64 | 72 | |
125 | 7MSZ|1|y | Mtb 70SIC in complex with MtbEttA at Trans_R1 state | ELECTRON MICROSCOPY | 3.1 | 77 | |
126 | 7MSM|1|y | Mtb 70SIC in complex with MtbEttA at Trans_R0 state | ELECTRON MICROSCOPY | 2.79 | 77 | |
127 | 7MSC|1|y | Mtb 70SIC in complex with MtbEttA at Pre_R0 state | ELECTRON MICROSCOPY | 2.97 | 77 | |
128 | 4V9I|1|CV | Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon | X-RAY DIFFRACTION | 3.3 | 77 | |
129 | 4V51|1|AV | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-RAY DIFFRACTION | 2.8 | 76 | |
130 | 4V51|1|CV | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-RAY DIFFRACTION | 2.8 | 76 | |
131 | 4V9I|1|AV | Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon | X-RAY DIFFRACTION | 3.3 | 77 | |
132 | 4V7L|1|AX | The structures of viomycin bound to the 70S ribosome. | X-RAY DIFFRACTION | 3 | 77 | |
133 | 4V7M|1|AX | The structures of Capreomycin bound to the 70S ribosome. | X-RAY DIFFRACTION | 3.45 | 77 | |
134 | 4V7M|1|CX | The structures of Capreomycin bound to the 70S ribosome. | X-RAY DIFFRACTION | 3.45 | 77 | |
135 | 4V5C|1|AV | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-RAY DIFFRACTION | 3.3 | 76 | |
136 | 4V7L|1|CX | The structures of viomycin bound to the 70S ribosome. | X-RAY DIFFRACTION | 3 | 77 | |
137 | 6N9F|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution | X-RAY DIFFRACTION | 3.7 | 72 | |
138 | 6N9E|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution | X-RAY DIFFRACTION | 3.7 | 72 | |
139 | 5WIT|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 72 | |
140 | 6OF1|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution | X-RAY DIFFRACTION | 2.8 | 72 | |
141 | 4W2I|1|CX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.7 | 72 | |
142 | 4W2H|1|CX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-RAY DIFFRACTION | 2.7 | 72 | |
143 | 4V9R|1|CX | Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome | X-RAY DIFFRACTION | 3 | 76 | |
144 | 4V9S|1|CX | Crystal structure of antibiotic GE82832 bound to 70S ribosome | X-RAY DIFFRACTION | 3.1 | 76 | |
145 | 4WQY|1|DX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid) | X-RAY DIFFRACTION | 2.8 | 72 | |
146 | 4WPO|1|DX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-RAY DIFFRACTION | 2.8 | 71 | |
147 | 1VY6|1|CX | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-RAY DIFFRACTION | 2.9 | 71 | |
148 | 1VY4|1|CX | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-RAY DIFFRACTION | 2.6 | 71 | |
149 | 1VY5|1|CX | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-RAY DIFFRACTION | 2.55 | 72 | |
150 | 4W2G|1|CX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.55 | 72 | |
151 | 4W2F|1|CX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.4 | 72 | |
152 | 5J4C|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution | X-RAY DIFFRACTION | 2.8 | 72 | |
153 | 5J4B|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 72 | |
154 | 5W4K|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-RAY DIFFRACTION | 2.7 | 72 | |
155 | 4Y4P|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-RAY DIFFRACTION | 2.5 | 72 | |
156 | 5WIS|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-RAY DIFFRACTION | 2.7 | 72 | |
157 | 6ND6|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution | X-RAY DIFFRACTION | 2.85 | 72 | |
158 | 6O97|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution | X-RAY DIFFRACTION | 2.75 | 72 | |
159 | 6CAE|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 72 | |
160 | 4Z3S|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-RAY DIFFRACTION | 2.65 | 71 | |
161 | 5DOY|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 71 | |
162 | 6ND5|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution | X-RAY DIFFRACTION | 2.6 | 72 | |
163 | 8EV7|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with kanamycin, mRNA, and A-, P-, and E-site tRNAs | X-RAY DIFFRACTION | 2.89 | 72 | |
164 | 8EV6|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs | X-RAY DIFFRACTION | 2.946 | 72 | |
165 | 7JQM|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-002, mRNA, and deacylated P-site tRNA at 3.05A resolution | X-RAY DIFFRACTION | 3.05 | 72 | |
166 | 7JQL|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution | X-RAY DIFFRACTION | 3 | 72 | |
167 | 6UO1|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution | X-RAY DIFFRACTION | 2.95 | 72 | |
168 | 4V6A|1|AW | Structure of EF-P bound to the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 77 | |
169 | 4V6A|1|CW | Structure of EF-P bound to the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 77 | |
170 | 4V7P|1|DW | Recognition of the amber stop codon by release factor RF1. | X-RAY DIFFRACTION | 3.62 | 77 | |
171 | 4V7P|1|AW | Recognition of the amber stop codon by release factor RF1. | X-RAY DIFFRACTION | 3.62 | 77 | |
172 | 4V63|1|AY | Structural basis for translation termination on the 70S ribosome. | X-RAY DIFFRACTION | 3.21 | 77 | |
173 | 4V63|1|CY | Structural basis for translation termination on the 70S ribosome. | X-RAY DIFFRACTION | 3.21 | 77 | |
174 | 5UQ7|1|y | 70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation) | ELECTRON MICROSCOPY | 3.5 | 77 | |
175 | 5UQ8|1|y | 70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation) | ELECTRON MICROSCOPY | 3.2 | 77 | |
176 | 4V6G|1|AC | Initiation complex of 70S ribosome with two tRNAs and mRNA. | X-RAY DIFFRACTION | 3.5 | 77 | |
177 | 6QNQ|1|2L | 70S ribosome initiation complex (IC) with experimentally assigned potassium ions | X-RAY DIFFRACTION | 3.5 | 72 | |
178 | 6YEF|1|x | 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.2 | 70 | |
179 | 6ZTN|1|AW | E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA) | ELECTRON MICROSCOPY | 3.9 | 72 | |
180 | 6ZTP|1|AW | E. coli 70S-RNAP expressome complex in uncoupled state 6 | ELECTRON MICROSCOPY | 3 | 72 | |
181 | 6ZTO|1|AW | E. coli 70S-RNAP expressome complex in uncoupled state 1 | ELECTRON MICROSCOPY | 3 | 72 | |
182 | 6ZU1|1|AW | E. coli 70S-RNAP expressome complex in uncoupled state 2 | ELECTRON MICROSCOPY | 3 | 72 | |
183 | 6ZTM|1|AW | E. coli 70S-RNAP expressome complex in collided state without NusG | ELECTRON MICROSCOPY | 3.3 | 72 | |
184 | 6ZTL|1|AW | E. coli 70S-RNAP expressome complex in collided state bound to NusG | ELECTRON MICROSCOPY | 3.5 | 72 | |
185 | 4V5K|1|AV | Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome | X-RAY DIFFRACTION | 3.2 | 77 | |
186 | 4V5C|1|CV | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-RAY DIFFRACTION | 3.3 | 76 | |
187 | 8G6Y|1|Z | Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe | ELECTRON MICROSCOPY | 2.09 | 75 | |
188 | 8G6X|1|Z | Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe | ELECTRON MICROSCOPY | 2.31 | 75 | |
189 | 8G6W|1|Z | Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe | ELECTRON MICROSCOPY | 2.02 | 75 | |
190 | 6DNC|1|LA | E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon | ELECTRON MICROSCOPY | 3.7 | 77 | |
191 | 5U9F|1|W | 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II) | ELECTRON MICROSCOPY | 3.2 | 77 | |
192 | 8CRX|1|C | Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound | ELECTRON MICROSCOPY | 2.78 | 72 | |
193 | 8CVM|1|C | Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map | ELECTRON MICROSCOPY | 2.66 | 72 | |
194 | 8A3L|1|V | Structural insights into the binding of bS1 to the ribosome | ELECTRON MICROSCOPY | 3.42 | 73 | |
195 | 7NBU|1|V | Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome. | ELECTRON MICROSCOPY | 3.11 | 73 | |
196 | 5LZA|1|v | Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC) | ELECTRON MICROSCOPY | 3.6 | 73 | |
197 | 7ST6|1|6 | Pre translocation, non-rotated 70S ribosome (Structure I) | ELECTRON MICROSCOPY | 3 | 77 | |
198 | 8B7Y|1|n | Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B. | ELECTRON MICROSCOPY | 3 | 76 | |
199 | 8AM9|1|Y | Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome | ELECTRON MICROSCOPY | 2.8 | 72 | |
200 | 5WFS|1|v | 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4) | ELECTRON MICROSCOPY | 3 | 73 | |
201 | 5WF0|1|v | 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2) | ELECTRON MICROSCOPY | 3.6 | 73 | |
202 | 5WFK|1|v | 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3) | ELECTRON MICROSCOPY | 3.4 | 73 | |
203 | 5WDT|1|v | 70S ribosome-EF-Tu H84A complex with GppNHp | ELECTRON MICROSCOPY | 3 | 73 | |
204 | 5WE6|1|v | 70S ribosome-EF-Tu H84A complex with GTP and cognate tRNA | ELECTRON MICROSCOPY | 3.4 | 73 | |
205 | 5WE4|1|v | 70S ribosome-EF-Tu wt complex with GppNHp | ELECTRON MICROSCOPY | 3.1 | 73 | |
206 | 5ZEU|1|v | M. smegmatis P/P state 30S ribosomal subunit | ELECTRON MICROSCOPY | 3.7 | 77 | |
207 | 5ZEB|1|v | M. Smegmatis P/P state 70S ribosome structure | ELECTRON MICROSCOPY | 3.4 | 77 | |
208 | 3J9Y|1|v | Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome | ELECTRON MICROSCOPY | 3.9 | 73 | |
209 | 5AFI|1|v | 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | ELECTRON MICROSCOPY | 2.9 | 73 | |
210 | 5L3P|1|x | Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex | ELECTRON MICROSCOPY | 3.7 | 73 | |
211 | 5LZD|1|v | Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA) | ELECTRON MICROSCOPY | 3.4 | 73 | |
212 | 5EL6|1|2L | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin | X-RAY DIFFRACTION | 3.1 | 72 | |
213 | 4WZO|1|2L | Complex of 70S ribosome with tRNA-fMet and mRNA | X-RAY DIFFRACTION | 3.3 | 73 | |
214 | 5E7K|1|2L | Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site | X-RAY DIFFRACTION | 3.2 | 72 | |
215 | 5IBB|1|2L | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site | X-RAY DIFFRACTION | 2.96 | 71 | |
216 | 6GSJ|1|2L | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site | X-RAY DIFFRACTION | 2.96 | 72 | |
217 | 6GSK|1|2L | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site | X-RAY DIFFRACTION | 3.36 | 75 | |
218 | 5IB7|1|2L | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin | X-RAY DIFFRACTION | 2.99 | 72 | |
219 | 5IB8|1|2L | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site | X-RAY DIFFRACTION | 3.13 | 72 | |
220 | 5EL4|1|2L | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position | X-RAY DIFFRACTION | 3.15 | 71 | |
221 | 5EL5|1|2L | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position | X-RAY DIFFRACTION | 3.15 | 72 | |
222 | 6GSL|1|2L | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site | X-RAY DIFFRACTION | 3.16 | 72 | |
223 | 5EL7|1|2L | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin | X-RAY DIFFRACTION | 3.15 | 72 | |
224 | 4WRA|1|2L | Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin. | X-RAY DIFFRACTION | 3.05 | 73 | |
225 | 4WQ1|1|2L | Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site. | X-RAY DIFFRACTION | 3.1 | 72 | |
226 | 4WR6|1|2L | Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site. | X-RAY DIFFRACTION | 3.05 | 72 | |
227 | 4WQR|1|2L | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site. | X-RAY DIFFRACTION | 3.15 | 72 | |
228 | 4WT1|1|2L | Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site | X-RAY DIFFRACTION | 3.05 | 72 | |
229 | 4WRO|1|2L | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site | X-RAY DIFFRACTION | 3.05 | 72 | |
230 | 4WSD|1|2L | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin. | X-RAY DIFFRACTION | 2.95 | 72 | |
231 | 4V8D|1|CC | Structure analysis of ribosomal decoding (cognate tRNA-tyr complex). | X-RAY DIFFRACTION | 3 | 77 | |
232 | 4V8F|1|CC | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin). | X-RAY DIFFRACTION | 3.3 | 77 | |
233 | 4V8E|1|DC | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex). | X-RAY DIFFRACTION | 3.3 | 77 | |
234 | 4V8E|1|BC | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex). | X-RAY DIFFRACTION | 3.3 | 77 | |
235 | 4V8F|1|BC | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin). | X-RAY DIFFRACTION | 3.3 | 77 | |
236 | 4V8D|1|AC | Structure analysis of ribosomal decoding (cognate tRNA-tyr complex). | X-RAY DIFFRACTION | 3 | 77 | |
237 | 5EL5|1|2K | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position | X-RAY DIFFRACTION | 3.15 | 72 | |
238 | 6GSL|1|2K | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site | X-RAY DIFFRACTION | 3.16 | 72 | |
239 | 5E7K|1|2K | Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site | X-RAY DIFFRACTION | 3.2 | 72 | |
240 | 5EL7|1|2K | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin | X-RAY DIFFRACTION | 3.15 | 72 | |
241 | 5EL6|1|2K | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin | X-RAY DIFFRACTION | 3.1 | 72 | |
242 | 4WZO|1|2K | Complex of 70S ribosome with tRNA-fMet and mRNA | X-RAY DIFFRACTION | 3.3 | 72 | |
243 | 4WR6|1|2K | Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site. | X-RAY DIFFRACTION | 3.05 | 71 | |
244 | 4WSD|1|2K | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin. | X-RAY DIFFRACTION | 2.95 | 72 | |
245 | 4WRA|1|2K | Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin. | X-RAY DIFFRACTION | 3.05 | 73 | |
246 | 4WT1|1|2K | Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site | X-RAY DIFFRACTION | 3.05 | 72 | |
247 | 4WRO|1|2K | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site | X-RAY DIFFRACTION | 3.05 | 72 | |
248 | 4WQR|1|2K | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site. | X-RAY DIFFRACTION | 3.15 | 72 | |
249 | 4WQ1|1|2K | Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site. | X-RAY DIFFRACTION | 3.1 | 72 | |
250 | 5IBB|1|2K | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site | X-RAY DIFFRACTION | 2.96 | 72 | |
251 | 5EL4|1|2K | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position | X-RAY DIFFRACTION | 3.15 | 72 | |
252 | 5IB8|1|2K | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site | X-RAY DIFFRACTION | 3.13 | 72 | |
253 | 5IB7|1|2K | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin | X-RAY DIFFRACTION | 2.99 | 72 | |
254 | 6GSJ|1|2K | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site | X-RAY DIFFRACTION | 2.96 | 72 | |
255 | 6GSK|1|2K | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site | X-RAY DIFFRACTION | 3.36 | 75 | |
256 | 4V8B|1|CC | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-RAY DIFFRACTION | 3 | 77 | |
257 | 4V87|1|CC | Crystal structure analysis of ribosomal decoding. | X-RAY DIFFRACTION | 3.1 | 77 | |
258 | 4V8C|1|DC | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-RAY DIFFRACTION | 3.3 | 77 | |
259 | 4V8C|1|CC | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-RAY DIFFRACTION | 3.3 | 77 | |
260 | 4V87|1|BC | Crystal structure analysis of ribosomal decoding. | X-RAY DIFFRACTION | 3.1 | 77 | |
261 | 4V8B|1|AC | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-RAY DIFFRACTION | 3 | 77 | |
262 | 4V6G|1|CC | Initiation complex of 70S ribosome with two tRNAs and mRNA. | X-RAY DIFFRACTION | 3.5 | 77 | |
263 | 6QNQ|1|2K | 70S ribosome initiation complex (IC) with experimentally assigned potassium ions | X-RAY DIFFRACTION | 3.5 | 71 | |
264 | 6OXI|1|QV | Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA) | X-RAY DIFFRACTION | 3.49 | 77 | |
265 | 6OTR|1|QV | Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU) | X-RAY DIFFRACTION | 3.12 | 77 | |
266 | 6OXA|1|QV | Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU) | X-RAY DIFFRACTION | 3.25 | 77 | |
267 | 6OXA|1|XV | Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU) | X-RAY DIFFRACTION | 3.25 | 77 | |
268 | 6OTR|1|XV | Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU) | X-RAY DIFFRACTION | 3.12 | 77 | |
269 | 6OXI|1|XV | Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA) | X-RAY DIFFRACTION | 3.49 | 77 | |
270 | 7K00|1|Z | Structure of the Bacterial Ribosome at 2 Angstrom Resolution | ELECTRON MICROSCOPY | 1.98 | 76 | |
271 | 8EMM|1|Z | Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates | ELECTRON MICROSCOPY | 2.1 | 75 | |
272 | 8EIU|1|Z | E. coli 70S ribosome with A-loop mutations U2554C and U2555C | ELECTRON MICROSCOPY | 2.24 | 74 | |
273 | 8EKC|1|x | Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA | ELECTRON MICROSCOPY | 2.7 | 72 | |
274 | 7UNR|1|v | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A) | ELECTRON MICROSCOPY | 2.9 | 72 | |
275 | 7UNU|1|v | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B) | ELECTRON MICROSCOPY | 2.9 | 72 | |
276 | 6ZTJ|1|AW | E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA) | ELECTRON MICROSCOPY | 3.4 | 72 | |
277 | 4WPO|1|BX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-RAY DIFFRACTION | 2.8 | 71 | |
278 | 4WQY|1|BX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid) | X-RAY DIFFRACTION | 2.8 | 72 | |
279 | 4V9R|1|AX | Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome | X-RAY DIFFRACTION | 3 | 76 | |
280 | 4V9S|1|AX | Crystal structure of antibiotic GE82832 bound to 70S ribosome | X-RAY DIFFRACTION | 3.1 | 76 | |
281 | 4W2G|1|AX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.55 | 72 | |
282 | 6XZB|1|f2 | E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification). | ELECTRON MICROSCOPY | 2.54 | 72 | |
283 | 1VY5|1|AX | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-RAY DIFFRACTION | 2.55 | 72 | |
284 | 1VY4|1|AX | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-RAY DIFFRACTION | 2.6 | 71 | |
285 | 1VY6|1|AX | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-RAY DIFFRACTION | 2.9 | 71 | |
286 | 1VY7|1|AX | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-RAY DIFFRACTION | 2.8 | 71 | |
287 | 4W2I|1|AX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.7 | 72 | |
288 | 4Z3S|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-RAY DIFFRACTION | 2.65 | 71 | |
289 | 5DOY|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 71 | |
290 | 5HAU|1|2w | Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 3 | 72 | |
291 | 5HAU|1|1w | Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 3 | 72 | |
292 | 4Z8C|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin | X-RAY DIFFRACTION | 2.9 | 72 | |
293 | 5HCQ|1|1x | Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.8 | 72 | |
294 | 5HD1|1|1x | Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.7 | 72 | |
295 | 5HCR|1|1x | Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.8 | 72 | |
296 | 5HCP|1|1x | Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.89 | 72 | |
297 | 5HD1|1|2x | Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.7 | 72 | |
298 | 5HCR|1|2x | Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.8 | 72 | |
299 | 5HCP|1|2x | Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.89 | 72 | |
300 | 5HCQ|1|2x | Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.8 | 72 | |
301 | 4Z8C|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin | X-RAY DIFFRACTION | 2.9 | 72 | |
302 | 6XZA|1|f2 | E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification). | ELECTRON MICROSCOPY | 2.66 | 72 | |
303 | 6XZ7|1|f | E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet). | ELECTRON MICROSCOPY | 2.1 | 72 | |
304 | 8AYE|1|Z | E. coli 70S ribosome bound to thermorubin and fMet-tRNA | ELECTRON MICROSCOPY | 1.96 | 76 | |
305 | 8FTO|1|Z | E. coli 70S ribosome with an improved MS2 tag inserted in H98 | ELECTRON MICROSCOPY | 1.85 | 75 | |
306 | 8SYL|1|x | Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs | ELECTRON MICROSCOPY | 2.9 | 72 | |
307 | 6WNW|1|5 | Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA | ELECTRON MICROSCOPY | 3.2 | 77 | |
308 | 8EKB|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution | X-RAY DIFFRACTION | 2.7 | 72 | |
309 | 8EKB|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution | X-RAY DIFFRACTION | 2.7 | 72 | |
310 | 4ZER|1|1x | Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 3.1 | 72 | |
311 | 5F8K|1|1x | Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.8 | 72 | |
312 | 7JQM|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-002, mRNA, and deacylated P-site tRNA at 3.05A resolution | X-RAY DIFFRACTION | 3.05 | 72 | |
313 | 7JQL|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution | X-RAY DIFFRACTION | 3 | 72 | |
314 | 6UO1|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution | X-RAY DIFFRACTION | 2.95 | 72 | |
315 | 6XQD|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution | X-RAY DIFFRACTION | 2.8 | 72 | |
316 | 6XQE|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution | X-RAY DIFFRACTION | 3 | 72 | |
317 | 4W2H|1|AX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-RAY DIFFRACTION | 2.7 | 72 | |
318 | 8EV6|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs | X-RAY DIFFRACTION | 2.946 | 72 | |
319 | 8EV7|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with kanamycin, mRNA, and A-, P-, and E-site tRNAs | X-RAY DIFFRACTION | 2.89 | 72 | |
320 | 7RQ9|1|1x | Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution | X-RAY DIFFRACTION | 2.6 | 71 | |
321 | 7RQ8|1|1x | Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution | X-RAY DIFFRACTION | 2.5 | 71 | |
322 | 6ND5|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution | X-RAY DIFFRACTION | 2.6 | 72 | |
323 | 6XQD|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution | X-RAY DIFFRACTION | 2.8 | 72 | |
324 | 6ND6|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution | X-RAY DIFFRACTION | 2.85 | 72 | |
325 | 6O97|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution | X-RAY DIFFRACTION | 2.75 | 72 | |
326 | 6CAE|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 72 | |
327 | 6OF1|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution | X-RAY DIFFRACTION | 2.8 | 72 | |
328 | 6N9F|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution | X-RAY DIFFRACTION | 3.7 | 72 | |
329 | 6N9E|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution | X-RAY DIFFRACTION | 3.7 | 72 | |
330 | 4Y4P|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-RAY DIFFRACTION | 2.5 | 72 | |
331 | 5WIS|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-RAY DIFFRACTION | 2.7 | 72 | |
332 | 5W4K|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-RAY DIFFRACTION | 2.7 | 72 | |
333 | 5J4C|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution | X-RAY DIFFRACTION | 2.8 | 72 | |
334 | 5J4B|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 72 | |
335 | 4W2F|1|AX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.4 | 72 | |
336 | 5WIT|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 72 | |
337 | 7U2I|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution | X-RAY DIFFRACTION | 2.55 | 72 | |
338 | 7U2H|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, and deacylated E-site tRNAgly at 2.55A resolution | X-RAY DIFFRACTION | 2.55 | 72 | |
339 | 7U2J|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution | X-RAY DIFFRACTION | 2.55 | 72 | |
340 | 7U2J|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution | X-RAY DIFFRACTION | 2.55 | 72 | |
341 | 7U2H|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, and deacylated E-site tRNAgly at 2.55A resolution | X-RAY DIFFRACTION | 2.55 | 72 | |
342 | 7U2I|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution | X-RAY DIFFRACTION | 2.55 | 72 | |
343 | 6XHW|1|1x | Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution | X-RAY DIFFRACTION | 2.5 | 71 | |
344 | 8CVK|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution | X-RAY DIFFRACTION | 2.5 | 72 | |
345 | 8CVJ|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution | X-RAY DIFFRACTION | 2.4 | 72 | |
346 | 8CVL|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution | X-RAY DIFFRACTION | 2.3 | 72 | |
347 | 6XHY|1|1x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution | X-RAY DIFFRACTION | 2.6 | 71 | |
348 | 6XHV|1|1x | Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution | X-RAY DIFFRACTION | 2.4 | 71 | |
349 | 6XHV|1|2x | Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution | X-RAY DIFFRACTION | 2.4 | 71 | |
350 | 6XHY|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution | X-RAY DIFFRACTION | 2.6 | 71 | |
351 | 6XHW|1|2x | Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution | X-RAY DIFFRACTION | 2.5 | 71 | |
352 | 8CVK|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution | X-RAY DIFFRACTION | 2.5 | 72 | |
353 | 8CVJ|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution | X-RAY DIFFRACTION | 2.4 | 72 | |
354 | 8CVL|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution | X-RAY DIFFRACTION | 2.3 | 72 | |
355 | 7RQ9|1|2x | Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution | X-RAY DIFFRACTION | 2.6 | 71 | |
356 | 7RQ8|1|2x | Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution | X-RAY DIFFRACTION | 2.5 | 71 | |
357 | 6XQE|1|2x | Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution | X-RAY DIFFRACTION | 3 | 72 | |
358 | 4ZER|1|2x | Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 3.1 | 72 | |
359 | 5F8K|1|2x | Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.8 | 72 | |
360 | 5J3C|1|XV | Thermus thermophilus 70S termination complex containing E. coli RF1 | X-RAY DIFFRACTION | 3.04 | 77 | |
361 | 5J30|1|XV | Thermus thermophilus 70S termination complex containing E. coli RF1 | X-RAY DIFFRACTION | 3.2 | 77 | |
362 | 5DFE|1|XV | 70S termination complex containing E. coli RF2 | X-RAY DIFFRACTION | 3.1 | 77 | |
363 | 5CZP|1|XV | 70S termination complex containing E. coli RF2 | X-RAY DIFFRACTION | 3.3 | 77 | |
364 | 8B0X|1|Z | Translating 70S ribosome in the unrotated state (P and E, tRNAs) | ELECTRON MICROSCOPY | 1.55 | 75 | |
365 | 7LH5|1|AV | Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs | X-RAY DIFFRACTION | 3.27 | 76 | |
366 | 5IQR|1|5 | Structure of RelA bound to the 70S ribosome | ELECTRON MICROSCOPY | 3 | 72 | |
367 | 7NWT|1|5 | Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV) | ELECTRON MICROSCOPY | 2.66 | 70 | |
368 | 5MDZ|1|5 | Structure of the 70S ribosome (empty A site) | ELECTRON MICROSCOPY | 3.1 | 70 | |
369 | 5MDV|1|5 | Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state) | ELECTRON MICROSCOPY | 2.97 | 70 | |
370 | 5MDW|1|5 | Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state) | ELECTRON MICROSCOPY | 3.06 | 70 | |
371 | 5MDY|1|5 | Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state) | ELECTRON MICROSCOPY | 3.35 | 70 | |
372 | 6C4I|1|x | Conformation of methylated GGQ in the peptidyl transferase center during translation termination | ELECTRON MICROSCOPY | 3.24 | 77 | |
373 | 7SA4|1|5 | Damaged 70S ribosome with PrfH bound | ELECTRON MICROSCOPY | 2.55 | 77 | |
374 | 6B4V|1|MC | Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome | X-RAY DIFFRACTION | 3.4 | 73 | |
375 | 6B4V|1|IA | Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome | X-RAY DIFFRACTION | 3.4 | 73 | |
376 | 6BOH|1|NC | Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome | X-RAY DIFFRACTION | 3.4 | 73 | |
377 | 6BOH|1|IA | Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome | X-RAY DIFFRACTION | 3.4 | 73 | |
378 | 6Q95|1|7 | Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome | ELECTRON MICROSCOPY | 3.7 | 76 | |
379 | 8FIZ|1|BB | Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex) | ELECTRON MICROSCOPY | 3.8 | 75 | |
380 | 5U4J|1|x+ 5U4J|1|z | Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome | ELECTRON MICROSCOPY | 3.7 | 15 | |
381 | 8G61|1|Pt | mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state) | ELECTRON MICROSCOPY | 2.94 | 72 | |
382 | 8BGH|1|4 | Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation | ELECTRON MICROSCOPY | 2.88 | 77 | |
383 | 8BIM|1|4 | Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site | ELECTRON MICROSCOPY | 2.04 | 77 | |
384 | 8BIL|1|4 | Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site. | ELECTRON MICROSCOPY | 2.04 | 77 | |
385 | 8BHP|1|4 | Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation | ELECTRON MICROSCOPY | 2.37 | 77 | |
386 | 8BGE|1|4 | Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation | ELECTRON MICROSCOPY | 2.11 | 77 | |
387 | 8BHL|1|4 | Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation | ELECTRON MICROSCOPY | 2.21 | 77 | |
388 | 8BHJ|1|4 | Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site | ELECTRON MICROSCOPY | 2.81 | 74 | |
389 | 8BH4|1|4 | Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site | ELECTRON MICROSCOPY | 2.62 | 74 | |
390 | 8BF7|1|4 | Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site | ELECTRON MICROSCOPY | 2.33 | 74 | |
391 | 8BHN|1|4 | Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site | ELECTRON MICROSCOPY | 2.85 | 74 | |
392 | 6OGF|1|5 | 70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III). | ELECTRON MICROSCOPY | 3.9 | 73 | |
393 | 6OG7|1|5 | 70S termination complex with RF2 bound to the UGA codon. Non-rotated ribosome with RF2 bound (Structure II) | ELECTRON MICROSCOPY | 3.3 | 75 | |
394 | 8A3L|1|W | Structural insights into the binding of bS1 to the ribosome | ELECTRON MICROSCOPY | 3.42 | 77 | |
395 | 8AP4|1|Z | Structure of Escherischia coli heat shock protein Hsp15 in complex with ribosomal 50S subunits bearing peptidyl-tRNA | ELECTRON MICROSCOPY | 3 | 71 | |
396 | 8EIU|1|Y | E. coli 70S ribosome with A-loop mutations U2554C and U2555C | ELECTRON MICROSCOPY | 2.24 | 74 | |
397 | 8EMM|1|Y | Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates | ELECTRON MICROSCOPY | 2.1 | 75 | |
398 | 4WZO|1|1K | Complex of 70S ribosome with tRNA-fMet and mRNA | X-RAY DIFFRACTION | 3.3 | 68 | |
399 | 6QNQ|1|1K | 70S ribosome initiation complex (IC) with experimentally assigned potassium ions | X-RAY DIFFRACTION | 3.5 | 65 | |
400 | 4V6G|1|CB | Initiation complex of 70S ribosome with two tRNAs and mRNA. | X-RAY DIFFRACTION | 3.5 | 65 | |
401 | 7UNV|1|v | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A) | ELECTRON MICROSCOPY | 2.7 | 72 | |
402 | 7UNW|1|v | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B) | ELECTRON MICROSCOPY | 2.6 | 72 | |
403 | 7ZHG|1|4 | High-resolution cryo-EM structure of Pyrococcus abyssi 30S ribosomal subunit bound to mRNA and initiator tRNA anticodon stem-loop | ELECTRON MICROSCOPY | 2.25 | 18 | |
404 | 7ZAG|1|4 | Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA,mRNA, aIF1A and the C-terminal domain of aIF5B. | ELECTRON MICROSCOPY | 2.77 | 72 | |
405 | 7ZKI|1|4 | Cryo-EM structure of aIF1A:aIF5B:Met-tRNAiMet complex from a Pyrococcus abyssi 30S initiation complex | ELECTRON MICROSCOPY | 3.6 | 72 | |
406 | 7ZAH|1|4 | Cryo-EM structure of an archaeal aIF5B bound to the ssu translation initiation complex | ELECTRON MICROSCOPY | 2.7 | 72 | |
407 | 7ZAI|1|4 | Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA, mRNA and aIF1A. | ELECTRON MICROSCOPY | 2.6 | 72 | |
408 | 5LMU|1|Z | Structure of bacterial 30S-IF3-mRNA-tRNA translation pre-initiation complex, closed form (state-4) | ELECTRON MICROSCOPY | 4 | 72 | |
409 | 6BZ7|1|XW | Thermus thermophilus 70S containing 16S G299A point mutation and near-cognate ASL Leucine in A site. | X-RAY DIFFRACTION | 3.68 | 76 | |
410 | 6BZ8|1|XW | Thermus thermophilus 70S containing 16S G347U point mutation and near-cognate ASL Leucine in A site | X-RAY DIFFRACTION | 3.74 | 77 | |
411 | 6BZ7|1|QW | Thermus thermophilus 70S containing 16S G299A point mutation and near-cognate ASL Leucine in A site. | X-RAY DIFFRACTION | 3.68 | 76 | |
412 | 6BZ8|1|QW | Thermus thermophilus 70S containing 16S G347U point mutation and near-cognate ASL Leucine in A site | X-RAY DIFFRACTION | 3.74 | 77 | |
413 | 6VYR|1|B | Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site | ELECTRON MICROSCOPY | 3.8 | 76 | |
414 | 6VYS|1|B | Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site | ELECTRON MICROSCOPY | 3.7 | 76 | |
415 | 6VU3|1|B | Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer | ELECTRON MICROSCOPY | 3.7 | 76 | |
416 | 6VYQ|1|B | Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site | ELECTRON MICROSCOPY | 3.7 | 76 | |
417 | 6X7K|1|B | Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site | ELECTRON MICROSCOPY | 3.1 | 76 | |
418 | 6X7F|1|B | Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B2 (TTC-B2) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site | ELECTRON MICROSCOPY | 3.5 | 76 | |
419 | 6X6T|1|B | Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B1 (TTC-B1) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site | ELECTRON MICROSCOPY | 3.2 | 76 | |
420 | 6XDQ|1|B | Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 30 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site | ELECTRON MICROSCOPY | 3.7 | 76 | |
421 | 6X7K|1|A | Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site | ELECTRON MICROSCOPY | 3.1 | 76 | |
422 | 6X7F|1|A | Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B2 (TTC-B2) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site | ELECTRON MICROSCOPY | 3.5 | 76 | |
423 | 6X6T|1|A | Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B1 (TTC-B1) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site | ELECTRON MICROSCOPY | 3.2 | 76 | |
424 | 6VU3|1|A | Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer | ELECTRON MICROSCOPY | 3.7 | 76 | |
425 | 6VYQ|1|A | Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site | ELECTRON MICROSCOPY | 3.7 | 76 | |
426 | 6VYS|1|A | Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site | ELECTRON MICROSCOPY | 3.7 | 76 | |
427 | 6VYR|1|A | Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site | ELECTRON MICROSCOPY | 3.8 | 76 | |
428 | 6XDQ|1|A | Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 30 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site | ELECTRON MICROSCOPY | 3.7 | 76 | |
429 | 4V6G|1|AD | Initiation complex of 70S ribosome with two tRNAs and mRNA. | X-RAY DIFFRACTION | 3.5 | 77 | |
430 | 6QNQ|1|3L | 70S ribosome initiation complex (IC) with experimentally assigned potassium ions | X-RAY DIFFRACTION | 3.5 | 77 | |
431 | 4V5K|1|CW | Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome | X-RAY DIFFRACTION | 3.2 | 77 | |
432 | 4V5K|1|AW | Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome | X-RAY DIFFRACTION | 3.2 | 77 | |
433 | 6BOH|1|D | Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome | X-RAY DIFFRACTION | 3.4 | 73 | |
434 | 6BOH|1|IB | Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome | X-RAY DIFFRACTION | 3.4 | 73 | |
435 | 6B4V|1|HB | Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome | X-RAY DIFFRACTION | 3.4 | 73 | |
436 | 6B4V|1|D | Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome | X-RAY DIFFRACTION | 3.4 | 73 | |
437 | 7MT7|1|x | Mtb 70S with P and E site tRNAs | ELECTRON MICROSCOPY | 2.71 | 77 | |
438 | 7SA4|1|6 | Damaged 70S ribosome with PrfH bound | ELECTRON MICROSCOPY | 2.55 | 77 | |
439 | 6C4I|1|y | Conformation of methylated GGQ in the peptidyl transferase center during translation termination | ELECTRON MICROSCOPY | 3.24 | 77 | |
440 | 5U4I|1|y | Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome | ELECTRON MICROSCOPY | 3.5 | 77 | |
441 | 6DNC|1|D | E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon | ELECTRON MICROSCOPY | 3.7 | 77 | |
442 | 4V8Q|1|BW | Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 77 | |
443 | 4V63|1|CZ | Structural basis for translation termination on the 70S ribosome. | X-RAY DIFFRACTION | 3.21 | 77 | |
444 | 4V63|1|AZ | Structural basis for translation termination on the 70S ribosome. | X-RAY DIFFRACTION | 3.21 | 77 | |
445 | 5D8B|1|XC | Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch | X-RAY DIFFRACTION | 3.63 | 77 | |
446 | 5D8B|1|BD | Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch | X-RAY DIFFRACTION | 3.63 | 77 | |
447 | 4V67|1|CZ | Crystal structure of a translation termination complex formed with release factor RF2. | X-RAY DIFFRACTION | 3 | 77 | |
448 | 4V67|1|AZ | Crystal structure of a translation termination complex formed with release factor RF2. | X-RAY DIFFRACTION | 3 | 77 | |
449 | 6OTR|1|QW | Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU) | X-RAY DIFFRACTION | 3.12 | 77 | |
450 | 6OXA|1|QW | Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU) | X-RAY DIFFRACTION | 3.25 | 77 | |
451 | 4YPB|1|QW | Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon | X-RAY DIFFRACTION | 3.4 | 77 | |
452 | 4W4G|1|QW | Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon | X-RAY DIFFRACTION | 3.3 | 77 | |
453 | 6OTR|1|XW | Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU) | X-RAY DIFFRACTION | 3.12 | 77 | |
454 | 6OXA|1|XW | Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU) | X-RAY DIFFRACTION | 3.25 | 77 | |
455 | 4YPB|1|XW | Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon | X-RAY DIFFRACTION | 3.4 | 77 | |
456 | 4W4G|1|XW | Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon | X-RAY DIFFRACTION | 3.3 | 77 | |
457 | 4V6G|1|CD | Initiation complex of 70S ribosome with two tRNAs and mRNA. | X-RAY DIFFRACTION | 3.5 | 77 | |
458 | 6QNQ|1|3K | 70S ribosome initiation complex (IC) with experimentally assigned potassium ions | X-RAY DIFFRACTION | 3.5 | 77 | |
459 | 4V8B|1|AD | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-RAY DIFFRACTION | 3 | 77 | |
460 | 4V87|1|BD | Crystal structure analysis of ribosomal decoding. | X-RAY DIFFRACTION | 3.1 | 77 | |
461 | 4V8C|1|CD | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-RAY DIFFRACTION | 3.3 | 77 | |
462 | 4V8C|1|DD | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-RAY DIFFRACTION | 3.3 | 77 | |
463 | 4V8B|1|CD | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-RAY DIFFRACTION | 3 | 77 | |
464 | 4V87|1|CD | Crystal structure analysis of ribosomal decoding. | X-RAY DIFFRACTION | 3.1 | 77 | |
465 | 4V5F|1|AW | The structure of the ribosome with elongation factor G trapped in the post-translocational state | X-RAY DIFFRACTION | 3.6 | 76 | |
466 | 4V5F|1|CW | The structure of the ribosome with elongation factor G trapped in the post-translocational state | X-RAY DIFFRACTION | 3.6 | 76 | |
467 | 7TOR|1|ETRN | Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20 | ELECTRON MICROSCOPY | 2.9 | 77 | |
468 | 6WDL|1|6 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-B1) | ELECTRON MICROSCOPY | 3.7 | 77 | |
469 | 6WD9|1|6 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-B) | ELECTRON MICROSCOPY | 3.7 | 77 | |
470 | 6WD7|1|6 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-D) | ELECTRON MICROSCOPY | 3.9 | 77 | |
471 | 6WD4|1|6 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B2) | ELECTRON MICROSCOPY | 3.7 | 77 | |
472 | 6WD6|1|6 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-C2) | ELECTRON MICROSCOPY | 3.7 | 77 | |
473 | 6WD2|1|6 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-A) | ELECTRON MICROSCOPY | 3.6 | 77 | |
474 | 6WD3|1|6 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B1) | ELECTRON MICROSCOPY | 3.6 | 77 | |
475 | 6WD5|1|6 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-C1) | ELECTRON MICROSCOPY | 3.6 | 77 | |
476 | 6WDI|1|6 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure IV-B2) | ELECTRON MICROSCOPY | 4 | 77 | |
477 | 6WD8|1|6 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-A) | ELECTRON MICROSCOPY | 3.7 | 77 | |
478 | 6WDD|1|6 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-A) | ELECTRON MICROSCOPY | 3.2 | 77 | |
479 | 6WDE|1|6 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B) | ELECTRON MICROSCOPY | 3 | 77 | |
480 | 6WDM|1|6 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-B2) | ELECTRON MICROSCOPY | 3.6 | 77 | |
481 | 6WDB|1|6 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-A) | ELECTRON MICROSCOPY | 4 | 77 | |
482 | 6WDK|1|6 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A2) | ELECTRON MICROSCOPY | 3.6 | 77 | |
483 | 6WDJ|1|6 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1) | ELECTRON MICROSCOPY | 3.7 | 77 | |
484 | 6H4N|1|w | Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome | ELECTRON MICROSCOPY | 3 | 77 | |
485 | 6Y69|1|w | Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX | ELECTRON MICROSCOPY | 2.86 | 74 | |
486 | 5U9F|1|X | 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II) | ELECTRON MICROSCOPY | 3.2 | 77 | |
487 | 5U9G|1|X | 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I) | ELECTRON MICROSCOPY | 3.2 | 77 | |
488 | 5KPX|1|32 | Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV) | ELECTRON MICROSCOPY | 3.9 | 77 | |
489 | 5KPS|1|32 | Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I) | ELECTRON MICROSCOPY | 3.9 | 77 | |
490 | 5KPW|1|32 | Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III) | ELECTRON MICROSCOPY | 3.9 | 77 | |
491 | 5ZEP|1|w | M. smegmatis hibernating state 70S ribosome structure | ELECTRON MICROSCOPY | 3.4 | 77 | |
492 | 5AFI|1|w | 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | ELECTRON MICROSCOPY | 2.9 | 73 | |
493 | 5WFK|1|w | 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3) | ELECTRON MICROSCOPY | 3.4 | 73 | |
494 | 5WF0|1|w | 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2) | ELECTRON MICROSCOPY | 3.6 | 73 | |
495 | 5WE6|1|w | 70S ribosome-EF-Tu H84A complex with GTP and cognate tRNA | ELECTRON MICROSCOPY | 3.4 | 73 | |
496 | 5WFS|1|w | 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4) | ELECTRON MICROSCOPY | 3 | 73 | |
497 | 5WDT|1|w | 70S ribosome-EF-Tu H84A complex with GppNHp | ELECTRON MICROSCOPY | 3 | 73 | |
498 | 5WE4|1|w | 70S ribosome-EF-Tu wt complex with GppNHp | ELECTRON MICROSCOPY | 3.1 | 73 | |
499 | 5UYM|1|X | 70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III) | ELECTRON MICROSCOPY | 3.2 | 77 | |
500 | 6BU8|1|X | 70S ribosome with S1 domains 1 and 2 (Class 1) | ELECTRON MICROSCOPY | 3.5 | 77 | |
501 | 6WDA|1|6 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C) | ELECTRON MICROSCOPY | 3.8 | 77 | |
502 | 6WD0|1|6 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-A) | ELECTRON MICROSCOPY | 3 | 77 | |
503 | 5UYL|1|X | 70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II) | ELECTRON MICROSCOPY | 3.6 | 77 | |
504 | 5UYK|1|X | 70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I) | ELECTRON MICROSCOPY | 3.9 | 77 | |
505 | 5UYN|1|X | 70S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc) | ELECTRON MICROSCOPY | 4 | 77 | |
506 | 5UYP|1|X | 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc) | ELECTRON MICROSCOPY | 3.9 | 77 | |
507 | 5UYQ|1|X | 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc) | ELECTRON MICROSCOPY | 3.8 | 77 | |
508 | 7K52|1|6 | Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III) | ELECTRON MICROSCOPY | 3.4 | 77 | |
509 | 7K55|1|6 | Near post-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure III-FS) | ELECTRON MICROSCOPY | 3.3 | 77 | |
510 | 7K53|1|6 | Pre-translocation +1-frameshifting(CCC-A) complex (Structure I-FS) | ELECTRON MICROSCOPY | 3.2 | 77 | |
511 | 7K50|1|6 | Pre-translocation non-frameshifting(CCA-A) complex (Structure I) | ELECTRON MICROSCOPY | 3.4 | 77 | |
512 | 7ST6|1|7 | Pre translocation, non-rotated 70S ribosome (Structure I) | ELECTRON MICROSCOPY | 3 | 77 | |
513 | 7OSM|1|PSIT | Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-RAY DIFFRACTION | 3 | 77 | |
514 | 7ST2|1|6 | Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII) | ELECTRON MICROSCOPY | 2.9 | 77 | |
515 | 7K51|1|6 | Mid-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure II) | ELECTRON MICROSCOPY | 3.5 | 77 | |
516 | 7K54|1|6 | Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS) | ELECTRON MICROSCOPY | 3.2 | 77 | |
517 | 7SSW|1|6 | Late translocation intermediate with EF-G dissociated (Structure VI) | ELECTRON MICROSCOPY | 3.8 | 77 | |
518 | 7SS9|1|6 | Late translocation intermediate with EF-G partially dissociated (Structure V) | ELECTRON MICROSCOPY | 3.9 | 77 | |
519 | 7SSD|1|6 | Mid translocation intermediate with EF-G bound with GDP (Structure IV) | ELECTRON MICROSCOPY | 3.3 | 77 | |
520 | 7UG7|1|Dt | 70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B | ELECTRON MICROSCOPY | 2.58 | 72 | |
521 | 7PJY|1|v | Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 1 (CHI1-EF-G-GDP) | ELECTRON MICROSCOPY | 3.1 | 73 | |
522 | 7LV0|1|6 | Pre-translocation rotated ribosome +1-frameshifting(CCC-A) complex (Structure Irot-FS) | ELECTRON MICROSCOPY | 3.2 | 77 | |
523 | 7PJV|1|v | Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP-Pi) | ELECTRON MICROSCOPY | 3.1 | 73 | |
524 | 7PJW|1|v | Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G-GDP-Pi) | ELECTRON MICROSCOPY | 4 | 73 | |
525 | 7OSA|1|PSIT | Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-RAY DIFFRACTION | 3 | 77 | |
526 | 7TOP|1|APTN | Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20 | ELECTRON MICROSCOPY | 2.4 | 77 | |
527 | 7TOO|1|APTN | Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20 | ELECTRON MICROSCOPY | 2.7 | 77 | |
528 | 7TOQ|1|PTRN | Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR | ELECTRON MICROSCOPY | 3.1 | 77 | |
529 | 7MT3|1|y | Mtb 70S with P/E tRNA | ELECTRON MICROSCOPY | 2.8 | 77 | |
530 | 7SSO|1|6 | Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A) | ELECTRON MICROSCOPY | 3.2 | 77 | |
531 | 7SSN|1|6 | Pre translocation 70S ribosome with A/P* and P/E tRNA (Structure II-B) | ELECTRON MICROSCOPY | 3.2 | 77 | |
532 | 7ST7|1|6 | Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio) | ELECTRON MICROSCOPY | 3.2 | 77 | |
533 | 7SSL|1|6 | Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III) | ELECTRON MICROSCOPY | 3.8 | 77 | |
534 | 6GXO|1|x | Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV) | ELECTRON MICROSCOPY | 3.9 | 77 | |
535 | 6WDG|1|5 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-B) | ELECTRON MICROSCOPY | 3.3 | 77 | |
536 | 6WDF|1|5 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-A) | ELECTRON MICROSCOPY | 3.3 | 77 | |
537 | 6WD1|1|5 | Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-B) | ELECTRON MICROSCOPY | 3.3 | 77 | |
538 | 4V8O|1|AV | Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3 | X-RAY DIFFRACTION | 3.8 | 77 | |
539 | 6OGI|1|5 | 70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V) | ELECTRON MICROSCOPY | 3.4 | 74 | |
540 | 7JT3|1|5 | Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV) | ELECTRON MICROSCOPY | 3.7 | 76 | |
541 | 6SWC|1|4 | IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi | ELECTRON MICROSCOPY | 3.3 | 71 | |
542 | 5L4O|1|A | Structure of an E.coli initiator tRNAfMet A1-U72 variant | X-RAY DIFFRACTION | 2.8 | 71 | |
543 | 3CW6|1|A | E. coli Initiator tRNA | X-RAY DIFFRACTION | 3.3 | 72 | |
544 | 3CW5|1|A | E. coli Initiator tRNA | X-RAY DIFFRACTION | 3.1 | 72 | |
545 | 7CHD|1|J | AtaT complexed with acetyl-methionyl-tRNAfMet | X-RAY DIFFRACTION | 3.804 | 70 | |
546 | 7CHD|1|I | AtaT complexed with acetyl-methionyl-tRNAfMet | X-RAY DIFFRACTION | 3.804 | 70 | |
547 | 2FMT|1|C | METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMET | X-RAY DIFFRACTION | 2.8 | 72 | |
548 | 2FMT|1|D | METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMET | X-RAY DIFFRACTION | 2.8 | 72 | |
549 | 3JCJ|1|v | Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association | ELECTRON MICROSCOPY | 3.7 | 73 | |
550 | 6O9K|1|y | 70S initiation complex | ELECTRON MICROSCOPY | 4 | 77 | |
551 | 3QSY|1|D | Recognition of the methionylated initiator tRNA by the translation initiation factor 2 in Archaea | X-RAY DIFFRACTION | 3.2 | 77 | |
552 | 6YS5|1|7 | Acinetobacter baumannii ribosome-amikacin complex - 30S subunit head | ELECTRON MICROSCOPY | 3 | 20 | |
553 | 6YTF|1|7 | Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit head | ELECTRON MICROSCOPY | 3 | 20 | |
554 | 6AZ1|1|3 | Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin | ELECTRON MICROSCOPY | 2.7 | 77 | |
555 | 6ORL|1|5 | RF1 pre-accommodated 70S complex at 24 ms | ELECTRON MICROSCOPY | 3.5 | 71 | |
556 | 6OSK|1|5 | RF1 accommodated 70S complex at 60 ms | ELECTRON MICROSCOPY | 3.6 | 71 | |
557 | 6ORE|1|5 | Release complex 70S | ELECTRON MICROSCOPY | 2.9 | 71 | |
558 | 6OSQ|1|5 | RF1 accommodated state bound Release complex 70S at long incubation time point | ELECTRON MICROSCOPY | 3.5 | 71 | |
559 | 7M5D|1|5 | Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I) | ELECTRON MICROSCOPY | 2.8 | 71 | |
560 | 6OUO|1|5 | RF2 accommodated state bound 70S complex at long incubation time | ELECTRON MICROSCOPY | 3.7 | 71 | |
561 | 6OT3|1|5 | RF2 accommodated state bound Release complex 70S at 24 ms | ELECTRON MICROSCOPY | 3.9 | 71 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.