#IFECompound(s)RNA source organismTitleMethodResolutionDate
12PWT|1|A+ 2PWT|1|B (rep)22-mer of the ribosomal decoding siteCrystal structure of the bacterial ribosomal decoding site complexed with aminoglycoside containing the L-HABA groupX-RAY DIFFRACTION1.82007-09-18
22F4S|1|A+ 2F4S|1|B5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'A-site RNA in complex with neamineX-RAY DIFFRACTION2.82006-05-02
33BNN|1|A+ 3BNN|1|BA site of human ribosomeCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding SiteX-RAY DIFFRACTION22008-06-24
43S4P|1|A+ 3S4P|1|BRNA (5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial ribosomal decoding site complexed with an amphiphilic paromomycin O2''-ether analogueX-RAY DIFFRACTION2.562011-09-21
54F8V|1|A+ 4F8V|1|BRNA (5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial ribosomal decoding site in complex with sisomicin (P21212 form)X-RAY DIFFRACTION2.82012-08-15
62F4U|1|A+ 2F4U|1|B5'-R(*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Asite RNA + designer antibioticX-RAY DIFFRACTION2.62006-05-02
73BNN|1|C+ 3BNN|1|DA site of human ribosomeCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding SiteX-RAY DIFFRACTION22008-06-24
83BNO|1|A+ 3BNO|1|BA site of human mitochondrial ribosomeCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site (Br-derivative)X-RAY DIFFRACTION2.352008-06-24
93BNO|1|C+ 3BNO|1|DA site of human mitochondrial ribosomeCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site (Br-derivative)X-RAY DIFFRACTION2.352008-06-24

Release history

Release2.02.12.22.32.42.52.62.72.82.92.102.112.122.132.142.152.162.172.182.192.202.212.222.232.242.252.262.272.282.292.302.312.322.332.342.352.362.372.382.392.402.412.422.432.442.452.462.472.482.492.502.512.522.532.542.552.562.572.582.592.602.612.622.632.642.652.662.672.682.692.702.712.722.732.742.752.762.772.782.792.802.812.822.832.842.852.862.872.882.892.902.912.92
Date2014-12-052014-12-122014-12-192014-12-262015-01-022015-01-092015-01-162015-01-232015-01-302015-02-062015-02-132015-02-202015-02-272015-03-062015-03-132015-03-202015-03-272015-04-032015-04-102015-04-172015-04-242015-05-012015-05-082015-05-152015-05-222015-05-292015-06-052015-06-122015-06-192015-06-262015-07-032015-07-102015-07-172015-07-242015-07-312015-08-072015-08-142015-08-212015-08-282015-09-042015-09-112015-09-182015-09-252015-10-022015-10-092015-10-162015-10-232015-10-302015-11-062015-11-132015-11-202015-11-272015-12-042015-12-112015-12-182015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-192016-02-262016-03-042016-03-112016-03-182016-03-252016-04-012016-04-082016-04-152016-04-222016-04-292016-05-062016-05-132016-05-202016-05-272016-06-032016-06-102016-06-172016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-262016-09-022016-09-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_36270.1NR_4.0_46403.12.93(4) 3BNN|1|A+3BNN|1|B, 3BNN|1|C+3BNN|1|D, 3BNO|1|A+3BNO|1|B, 3BNO|1|C+3BNO|1|D(5) 3S4P|1|A+3S4P|1|B, 2PWT|1|A+2PWT|1|B, 2F4U|1|A+2F4U|1|B, 2F4S|1|A+2F4S|1|B, 4F8V|1|A+4F8V|1|B(1) 3BNP|1|A+3BNP|1|B
NR_4.0_36270.1NR_4.0_52295.12.93(1) 2F4U|1|A+2F4U|1|B(8) 3BNN|1|C+3BNN|1|D, 4F8V|1|A+4F8V|1|B, 3BNN|1|A+3BNN|1|B, 3S4P|1|A+3S4P|1|B, 2PWT|1|A+2PWT|1|B, 3BNO|1|C+3BNO|1|D, 2F4S|1|A+2F4S|1|B, 3BNO|1|A+3BNO|1|B(2) 1O9M|1|A+1O9M|1|B, 2ET8|1|A+2ET8|1|B
NR_4.0_36270.1NR_4.0_82951.12.93(1) 2F4S|1|A+2F4S|1|B(8) 3BNN|1|C+3BNN|1|D, 4F8V|1|A+4F8V|1|B, 3BNN|1|A+3BNN|1|B, 3S4P|1|A+3S4P|1|B, 2PWT|1|A+2PWT|1|B, 3BNO|1|C+3BNO|1|D, 2F4U|1|A+2F4U|1|B, 3BNO|1|A+3BNO|1|B(1) 2O3X|1|A+2O3X|1|B
NR_4.0_36270.1NR_4.0_97151.12.93(3) 4F8V|1|A+4F8V|1|B, 2PWT|1|A+2PWT|1|B, 3S4P|1|A+3S4P|1|B(6) 2F4U|1|A+2F4U|1|B, 3BNO|1|C+3BNO|1|D, 3BNN|1|C+3BNN|1|D, 3BNO|1|A+3BNO|1|B, 3BNN|1|A+3BNN|1|B, 2F4S|1|A+2F4S|1|B(31) 4WCR|1|A+4WCR|1|B, 4WCS|1|A+4WCS|1|B, 5BWS|1|A+5BWS|1|B, 5BWS|1|C+5BWS|1|D, 5BXK|1|A+5BXK|1|B, 5BXK|1|C+5BXK|1|D, 4K32|1|A+4K32|1|B, 4P20|1|A+4P20|1|B, 4P3S|1|B+4P3S|1|A, 4PDQ|1|A+4PDQ|1|B, 4WCP|1|A+4WCP|1|B+4WCP|1|C, 4WCQ|1|A+4WCQ|1|B, 3WRU|1|A+3WRU|1|B, 1YRJ|1|A+1YRJ|1|B, 2BE0|1|A+2BE0|1|B, 2BEE|1|A+2BEE|1|B, 2ESI|1|A+2ESI|1|B, 2ESJ|1|A+2ESJ|1|B, 2ET3|1|A+2ET3|1|B, 2ET4|1|A+2ET4|1|B, 2ET5|1|A+2ET5|1|B, 2F4T|1|B+2F4T|1|A, 1J7T|1|A+1J7T|1|B, 3BNL|1|A+3BNL|1|B, 1LC4|1|A+1LC4|1|B, 3TD1|1|B+3TD1|1|A, 1MWL|1|A+1MWL|1|B, 4F8U|1|A+4F8U|1|B, 4GPW|1|A+4GPW|1|B, 4GPX|1|A+4GPX|1|B, 4GPY|1|A+4GPY|1|B

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
13BNO|1|C+3BNO|1|DCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site (Br-derivative)X-RAY DIFFRACTION2.3520
23BNN|1|C+3BNN|1|DCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding SiteX-RAY DIFFRACTION221
33BNO|1|A+3BNO|1|BCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site (Br-derivative)X-RAY DIFFRACTION2.3520
43BNN|1|A+3BNN|1|BCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding SiteX-RAY DIFFRACTION221
54F8V|1|A+4F8V|1|BCrystal structure of the bacterial ribosomal decoding site in complex with sisomicin (P21212 form)X-RAY DIFFRACTION2.821
62PWT|1|A+2PWT|1|BCrystal structure of the bacterial ribosomal decoding site complexed with aminoglycoside containing the L-HABA groupX-RAY DIFFRACTION1.821
73S4P|1|A+3S4P|1|BCrystal structure of the bacterial ribosomal decoding site complexed with an amphiphilic paromomycin O2''-ether analogueX-RAY DIFFRACTION2.5621
82F4U|1|A+2F4U|1|BAsite RNA + designer antibioticX-RAY DIFFRACTION2.621
92F4S|1|A+2F4S|1|BA-site RNA in complex with neamineX-RAY DIFFRACTION2.821