#PDBTitleRNA source organismCompoundsMethodResolutionDate
12GDI|1|Y (rep)Crystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphateTPP riboswitch, TPP riboswitchX-RAY DIFFRACTION2.052006-07-04
24NYA|1|ACrystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amineEscherichia colithiM TPP riboswitch, thiM TPP riboswitchX-RAY DIFFRACTION2.652014-06-04
32GDI|1|XCrystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphateTPP riboswitch, TPP riboswitchX-RAY DIFFRACTION2.052006-07-04
42HOJ|1|ACrystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, manganese ionsthi-box riboswitchX-RAY DIFFRACTION2.52006-09-19
54NYB|1|ACrystal structure of the E. coli thiM riboswitch in complex with (4-(1,2,3-thiadiazol-4-yl)phenyl)methanamineEscherichia colithiM TPP riboswitchX-RAY DIFFRACTION3.12014-06-04
62HOK|1|ACrystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, calcium ionsthi-box riboswitchX-RAY DIFFRACTION3.22006-09-19
74NYD|1|ACrystal structure of the E. coli thiM riboswitch in complex with hypoxanthineEscherichia colithiM TPP riboswitchX-RAY DIFFRACTION2.92014-06-04
82HOL|1|ACrystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, barium ionsthi-box riboswitchX-RAY DIFFRACTION2.92006-09-19
94NYC|1|ACrystal structure of the E. coli thiM riboswitch in complex with thieno[2,3-b]pyrazin-7-amineEscherichia colithiM TPP riboswitchX-RAY DIFFRACTION3.152014-06-04
102HOM|1|ACrystal structure of an E. coli thi-box riboswitch bound to thiamine monophosphatethi-box riboswitchX-RAY DIFFRACTION2.892006-09-19
112HOO|1|ACrystal structure of an E. coli thi-box riboswitch bound to benfotiaminethi-box riboswitchX-RAY DIFFRACTION32006-09-19
124NYA|1|BCrystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amineEscherichia colithiM TPP riboswitch, thiM TPP riboswitchX-RAY DIFFRACTION2.652014-06-04
134NYG|1|ACrystal structure of the E. coli thiM riboswitch in complex with thiamineEscherichia colithiM TPP riboswitchX-RAY DIFFRACTION3.052014-06-04
142HOP|1|ACrystal structure of an E. coli thi-box riboswitch bound to pyrithiaminethi-box riboswitchX-RAY DIFFRACTION3.32006-09-19

Release history

Release2.02.12.22.32.42.52.62.72.82.92.102.112.122.132.142.152.162.172.182.192.202.212.222.232.242.252.262.272.282.292.302.312.322.332.342.352.362.372.382.392.402.412.422.432.442.452.462.472.482.492.502.512.522.532.542.552.562.572.582.592.602.612.622.632.642.652.662.672.682.692.702.712.722.732.742.752.762.772.782.792.802.812.822.832.842.852.862.872.882.892.902.912.922.932.942.952.962.972.982.992.1002.1012.1022.1032.1042.1052.1062.1072.1082.1092.1102.1112.1122.1132.1142.1152.1162.1172.1182.1192.1202.1212.1222.1232.1242.1252.1262.1272.1282.1292.1302.1312.1322.1332.1342.1352.1362.1372.1382.1392.1402.1412.1422.1432.1442.1452.146
Date2014-12-052014-12-122014-12-192014-12-262015-01-022015-01-092015-01-162015-01-232015-01-302015-02-062015-02-132015-02-202015-02-272015-03-062015-03-132015-03-202015-03-272015-04-032015-04-102015-04-172015-04-242015-05-012015-05-082015-05-152015-05-222015-05-292015-06-052015-06-122015-06-192015-06-262015-07-032015-07-102015-07-172015-07-242015-07-312015-08-072015-08-142015-08-212015-08-282015-09-042015-09-112015-09-182015-09-252015-10-022015-10-092015-10-162015-10-232015-10-302015-11-062015-11-132015-11-202015-11-272015-12-042015-12-112015-12-182015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-192016-02-262016-03-042016-03-112016-03-182016-03-252016-04-012016-04-082016-04-152016-04-222016-04-292016-05-062016-05-132016-05-202016-05-272016-06-032016-06-102016-06-172016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-262016-09-022016-09-092016-09-162016-09-232016-09-302016-10-072016-10-142016-10-212016-10-282016-11-042016-11-112016-11-182016-11-252016-12-022016-12-092016-12-162016-12-232016-12-302017-01-062017-01-132017-01-202017-01-272017-02-032017-02-102017-02-172017-02-242017-03-032017-03-102017-03-172017-03-242017-03-312017-04-112017-04-152017-04-262017-04-292017-05-092017-05-152017-05-202017-05-272017-06-072017-06-112017-06-212017-06-242017-06-282017-07-042017-07-102017-07-152017-07-262017-07-312017-08-052017-08-122017-08-192017-08-262017-09-032017-09-092017-09-16

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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
12HOP|1|ACrystal structure of an E. coli thi-box riboswitch bound to pyrithiamineX-RAY DIFFRACTION3.376
24NYG|1|ACrystal structure of the E. coli thiM riboswitch in complex with thiamineX-RAY DIFFRACTION3.0578
32HOO|1|ACrystal structure of an E. coli thi-box riboswitch bound to benfotiamineX-RAY DIFFRACTION383
44NYD|1|ACrystal structure of the E. coli thiM riboswitch in complex with hypoxanthineX-RAY DIFFRACTION2.979
54NYB|1|ACrystal structure of the E. coli thiM riboswitch in complex with (4-(1,2,3-thiadiazol-4-yl)phenyl)methanamineX-RAY DIFFRACTION3.179
64NYC|1|ACrystal structure of the E. coli thiM riboswitch in complex with thieno[2,3-b]pyrazin-7-amineX-RAY DIFFRACTION3.1579
72HOK|1|ACrystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, calcium ionsX-RAY DIFFRACTION3.278
82HOM|1|ACrystal structure of an E. coli thi-box riboswitch bound to thiamine monophosphateX-RAY DIFFRACTION2.8980
92HOL|1|ACrystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, barium ionsX-RAY DIFFRACTION2.979
102HOJ|1|ACrystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, manganese ionsX-RAY DIFFRACTION2.578
112GDI|1|XCrystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphateX-RAY DIFFRACTION2.0578
124NYA|1|ACrystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amineX-RAY DIFFRACTION2.6578
134NYA|1|BCrystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amineX-RAY DIFFRACTION2.6578
142GDI|1|YCrystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphateX-RAY DIFFRACTION2.0578