#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
12GDI|1|X (rep)TPP riboswitchCrystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphateX-ray diffraction2.052006-07-04
22GDI|1|YTPP riboswitchCrystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphateX-ray diffraction2.052006-07-04
37TDA|1|ATPP riboswitch (THI element)thiM TPP riboswitch RNA (80-MER)Escherichia coliBacteriaRF00059Crystal structure of the E. coli thiM riboswitch in complex with thiamine pyrophosphate, manganese ionsX-ray diffraction2.252022-02-16
47TDB|1|ATPP riboswitch (THI element)thiM riboswitch RNA (83-MER)Escherichia coliBacteriaRF00059Crystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, manganese ionsX-ray diffraction2.562022-02-16
54NYA|1|ATPP riboswitch (THI element)thiM TPP riboswitchEscherichia coliBacteriaRF00059Crystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amineX-ray diffraction2.652014-06-04
62HOJ|1|Athi-box riboswitchCrystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, manganese ionsX-ray diffraction2.52006-09-19
77TDC|1|ATPP riboswitch (THI element)thiM riboswitch RNA (83-MER)Escherichia coliBacteriaRF00059Crystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, calcium ionsX-ray diffraction2.462022-02-16
82HOM|1|Athi-box riboswitchCrystal structure of an E. coli thi-box riboswitch bound to thiamine monophosphateX-ray diffraction2.892006-09-19
92HOL|1|Athi-box riboswitchCrystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, barium ionsX-ray diffraction2.92006-09-19
104NYC|1|ATPP riboswitch (THI element)thiM TPP riboswitchEscherichia coliBacteriaRF00059Crystal structure of the E. coli thiM riboswitch in complex with thieno[2,3-b]pyrazin-7-amineX-ray diffraction3.152014-06-04
114NYD|1|ATPP riboswitch (THI element)thiM TPP riboswitchEscherichia coliBacteriaRF00059Crystal structure of the E. coli thiM riboswitch in complex with hypoxanthineX-ray diffraction2.92014-06-04
124NYA|1|BTPP riboswitch (THI element)thiM TPP riboswitchEscherichia coliBacteriaRF00059Crystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amineX-ray diffraction2.652014-06-04
134NYB|1|ATPP riboswitch (THI element)thiM TPP riboswitchEscherichia coliBacteriaRF00059Crystal structure of the E. coli thiM riboswitch in complex with (4-(1,2,3-thiadiazol-4-yl)phenyl)methanamineX-ray diffraction3.12014-06-04
142HOO|1|Athi-box riboswitchCrystal structure of an E. coli thi-box riboswitch bound to benfotiamineX-ray diffraction32006-09-19
152HOK|1|Athi-box riboswitchCrystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, calcium ionsX-ray diffraction3.22006-09-19
167TD7|1|ATPP riboswitch (THI element)thiM riboswitch RNA (78-MER)Escherichia coliBacteriaRF00059Crystal structure of an E. coli thiM riboswitch bound to thiamine, manganese ionsX-ray diffraction2.952022-02-16
174NYG|1|ATPP riboswitch (THI element)thiM TPP riboswitchEscherichia coliBacteriaRF00059Crystal structure of the E. coli thiM riboswitch in complex with thiamineX-ray diffraction3.052014-06-04
182HOP|1|Athi-box riboswitchCrystal structure of an E. coli thi-box riboswitch bound to pyrithiamineX-ray diffraction3.32006-09-19

Release history

Release3.2183.2193.2203.2213.2223.2233.2243.2253.2263.2273.2283.2293.2303.231
Date2022-02-162022-02-232022-03-022022-03-092022-03-162022-03-232022-03-302022-04-062022-04-132022-04-202022-04-272022-05-042022-05-112022-05-18

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_42241.2NR_4.0_42241.13.218(14) 4NYA|1|A, 2GDI|1|X, 2HOP|1|A, 2HOO|1|A, 4NYG|1|A, 2HOM|1|A, 4NYD|1|A, 2HOL|1|A, 4NYC|1|A, 2HOK|1|A, 4NYB|1|A, 2HOJ|1|A, 4NYA|1|B, 2GDI|1|Y(4) 7TDB|1|A, 7TDA|1|A, 7TD7|1|A, 7TDC|1|A(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14NYG|1|ACrystal structure of the E. coli thiM riboswitch in complex with thiamineX-RAY DIFFRACTION3.0578
22HOP|1|ACrystal structure of an E. coli thi-box riboswitch bound to pyrithiamineX-RAY DIFFRACTION3.376
32HOO|1|ACrystal structure of an E. coli thi-box riboswitch bound to benfotiamineX-RAY DIFFRACTION383
47TD7|1|ACrystal structure of an E. coli thiM riboswitch bound to thiamine, manganese ionsX-RAY DIFFRACTION2.9578
54NYC|1|ACrystal structure of the E. coli thiM riboswitch in complex with thieno[2,3-b]pyrazin-7-amineX-RAY DIFFRACTION3.1579
64NYB|1|ACrystal structure of the E. coli thiM riboswitch in complex with (4-(1,2,3-thiadiazol-4-yl)phenyl)methanamineX-RAY DIFFRACTION3.179
74NYD|1|ACrystal structure of the E. coli thiM riboswitch in complex with hypoxanthineX-RAY DIFFRACTION2.979
87TDA|1|ACrystal structure of the E. coli thiM riboswitch in complex with thiamine pyrophosphate, manganese ionsX-RAY DIFFRACTION2.2579
97TDB|1|ACrystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, manganese ionsX-RAY DIFFRACTION2.5679
107TDC|1|ACrystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, calcium ionsX-RAY DIFFRACTION2.4679
112HOJ|1|ACrystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, manganese ionsX-RAY DIFFRACTION2.578
122HOL|1|ACrystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, barium ionsX-RAY DIFFRACTION2.979
132HOK|1|ACrystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, calcium ionsX-RAY DIFFRACTION3.278
142HOM|1|ACrystal structure of an E. coli thi-box riboswitch bound to thiamine monophosphateX-RAY DIFFRACTION2.8980
152GDI|1|XCrystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphateX-RAY DIFFRACTION2.0578
164NYA|1|ACrystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amineX-RAY DIFFRACTION2.6578
174NYA|1|BCrystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amineX-RAY DIFFRACTION2.6578
182GDI|1|YCrystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphateX-RAY DIFFRACTION2.0578
Copyright 2024 BGSU RNA group. Page generated in 0.0076 s