Equivalence class NR_4.0_43481.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Domain | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6V3A|1|sN1 (rep) | Small subunit ribosomal RNA | 16s Ribosomal RNA | Acinetobacter baumannii | Bacteria | RF00177 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA | Electron microscopy | 2.82 | 2020-02-05 |
| 2 | 6V3B|1|sN1 | Small subunit ribosomal RNA | 16s Ribosomal RNA | Acinetobacter baumannii | Bacteria | RF00177 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty state | Electron microscopy | 2.91 | 2020-02-05 |
| 3 | 6V39|1|sN1 | Small subunit ribosomal RNA | 16s Ribosomal RNA | Acinetobacter baumannii | Bacteria | RF00177 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA | Electron microscopy | 3.04 | 2020-02-05 |
| 4 | 6YT9|1|2 | Small subunit ribosomal RNA | 16S ribosomal RNA | Acinetobacter baumannii | Bacteria | RF00177 | Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit body | Electron microscopy | 2.7 | 2020-09-16 |
| 5 | 6YPU|1|2 | Small subunit ribosomal RNA | 16S ribosomal RNA | Acinetobacter baumannii | Bacteria | RF00177 | Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body | Electron microscopy | 2.9 | 2020-09-16 |
| 6 | 6YS5|1|3 | Small subunit ribosomal RNA | 16S ribosomal RNA | Acinetobacter baumannii | Bacteria | RF00177 | Acinetobacter baumannii ribosome-amikacin complex - 30S subunit head | Electron microscopy | 3 | 2020-09-16 |
| 7 | 6YTF|1|3 | Small subunit ribosomal RNA | 16S ribosomal RNA | Acinetobacter baumannii | Bacteria | RF00177 | Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit head | Electron microscopy | 3 | 2020-09-16 |
| 8 | 6YT9|1|4 | Small subunit ribosomal RNA | 16S ribosomal RNA | Acinetobacter baumannii | Bacteria | RF00177 | Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit body | Electron microscopy | 2.7 | 2020-09-16 |
| 9 | 6YPU|1|4 | Small subunit ribosomal RNA | 16S ribosomal RNA | Acinetobacter baumannii | Bacteria | RF00177 | Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body | Electron microscopy | 2.9 | 2020-09-16 |
Release history
| Release | 3.144 | 3.145 | 3.146 | 3.147 | 3.148 | 3.149 | 3.150 | 3.151 | 3.152 | 3.153 | 3.154 | 3.155 | 3.156 | 3.157 | 3.158 | 3.159 | 3.160 | 3.161 | 3.162 | 3.163 | 3.164 | 3.165 | 3.166 | 3.167 | 3.168 | 3.169 | 3.170 | 3.171 | 3.172 | 3.173 | 3.174 | 3.175 | 3.176 | 3.177 | 3.178 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-09-16 | 2020-09-23 | 2020-09-30 | 2020-10-07 | 2020-10-14 | 2020-10-21 | 2020-10-28 | 2020-11-04 | 2020-11-11 | 2020-11-18 | 2020-11-25 | 2020-12-02 | 2020-12-09 | 2020-12-16 | 2020-12-23 | 2020-12-30 | 2021-01-06 | 2021-01-13 | 2021-01-20 | 2021-01-27 | 2021-02-03 | 2021-02-10 | 2021-02-17 | 2021-02-24 | 2021-03-03 | 2021-03-10 | 2021-03-17 | 2021-03-24 | 2021-03-31 | 2021-04-07 | 2021-04-14 | 2021-04-21 | 2021-04-28 | 2021-05-05 | 2021-05-12 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_43481.1 | NR_4.0_71501.1 | 3.144 | (3) 6V39|1|sN1, 6V3B|1|sN1, 6V3A|1|sN1 | (6) 6YS5|1|3, 6YPU|1|4, 6YPU|1|2, 6YTF|1|3, 6YT9|1|4, 6YT9|1|2 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_43481.1 | NR_4.0_43481.2 | 3.179 | (9) 6V39|1|sN1, 6YPU|1|2, 6YT9|1|2, 6V3B|1|sN1, 6YS5|1|3, 6YTF|1|3, 6V3A|1|sN1, 6YPU|1|4, 6YT9|1|4 | (0) | (5) 7M4X|1|a, 7M4Y|1|a, 7M4Z|1|a, 7M4W|1|a, 7M4U|1|a |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6YTF|1|3 | Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit head | ELECTRON MICROSCOPY | 3 | 453 |
| 2 | 6YS5|1|3 | Acinetobacter baumannii ribosome-amikacin complex - 30S subunit head | ELECTRON MICROSCOPY | 3 | 453 |
| 3 | 6V3A|1|sN1 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA | ELECTRON MICROSCOPY | 2.82 | 1519 |
| 4 | 6V3B|1|sN1 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty state | ELECTRON MICROSCOPY | 2.91 | 1519 |
| 5 | 6YPU|1|2 | Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body | ELECTRON MICROSCOPY | 2.9 | 894 |
| 6 | 6YT9|1|2 | Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit body | ELECTRON MICROSCOPY | 2.7 | 894 |
| 7 | 6V39|1|sN1 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA | ELECTRON MICROSCOPY | 3.04 | 1519 |
| 8 | 6YT9|1|4 | Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit body | ELECTRON MICROSCOPY | 2.7 | 146 |
| 9 | 6YPU|1|4 | Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body | ELECTRON MICROSCOPY | 2.9 | 146 |