Equivalence class NR_4.0_45043.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4WRT|1|V+ 4WRT|1|R (rep) | Influenza virus polymerase vRNA promoter 5' end, Influenza virus polymerase vRNA promoter 3' end | Influenza B virus | Viruses | Crystal structure of Influenza B polymerase with bound vRNA promoter (form FluB2) | X-ray diffraction | 2.7 | 2014-11-19 | ||
| 2 | 6QCW|1|V+ 6QCW|1|R+ 6QCW|1|M | RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*UP*AP*UP*U)-3'), RNA (5'-D(*(GDM))-R(P*GP*AP*AP*UP*GP*CP*CP*AP*UP*AP*AP*UP*AP*G)-3') | synthetic construct | Synthetic | Crystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer | X-ray diffraction | 2.88 | 2019-06-05 | ||
| 3 | 6QCX|1|V+ 6QCX|1|R+ 6QCX|1|M | RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*UP*AP*UP*U)-3'), RNA (5'-D(*(GDM))-R(P*GP*AP*AP*UP*GP*CP*UP*AP*UP*AP*AP*UP*AP*GP*C)-3') | synthetic construct | Synthetic | Crystal structure of influenza B polymerase initiation state with capped 15-mer RNA primer | X-ray diffraction | 3.08 | 2019-06-05 | ||
| 4 | 6QCV|1|V+ 6QCV|1|R+ 6QCV|1|M | RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*UP*AP*UP*U)-3'), RNA (5'-D(*(GDM))-R(P*GP*AP*AP*UP*GP*CP*UP*AP*UP*AP*AP*UP*AP*G)-3') | synthetic construct | Synthetic | Crystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer and CTP | X-ray diffraction | 3.24 | 2019-06-05 | ||
| 5 | 4WSA|1|V+ 4WSA|1|R | Influenza B vRNA promoter 5' end, Influenza B vRNA promoter 3' end | Influenza B virus | Viruses | Crystal structure of Influenza B polymerase bound to the vRNA promoter (FluB1 form) | X-ray diffraction | 3.4 | 2014-11-19 | ||
| 6 | 5M3J|1|V+ 5M3J|1|R | RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*C)-3') | Influenza B virus | Viruses | Influenza B polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTD | X-ray diffraction | 3.5 | 2016-12-21 | ||
| 7 | 5MSG|1|V+ 5MSG|1|R | RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*U)-3') | Influenza B virus | Viruses | Influenza B polymerase bound to vRNA promoter and capped RNA primer | X-ray diffraction | 3.8 | 2017-02-08 | ||
| 8 | 6QCS|1|V+ 6QCS|1|R | 5 end, 3 end | Influenza B virus | Viruses | Influenza B polymerase pre-initiation complex | Electron microscopy | 3.1 | 2019-06-05 | ||
| 9 | 6QCT|1|V | 5 end | Influenza B virus | Viruses | Influenza B polymerase elongation complex | Electron microscopy | 3.2 | 2019-06-05 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-06-07 | 2019-06-14 | 2019-06-21 | 2019-06-28 | 2019-07-05 | 2019-07-12 | 2019-07-19 | 2019-07-26 | 2019-08-02 | 2019-08-09 | 2019-08-16 | 2019-08-23 | 2019-08-28 | 2019-09-04 | 2019-09-11 | 2019-09-19 | 2019-09-25 | 2019-10-03 | 2019-10-09 | 2019-10-16 | 2019-10-23 | 2019-10-30 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_45043.1 | NR_4.0_74156.4 | 3.77 | (4) 5MSG|1|V+5MSG|1|R, 5M3J|1|V+5M3J|1|R, 4WSA|1|V+4WSA|1|R, 4WRT|1|V+4WRT|1|R | (5) 6QCX|1|V+6QCX|1|R+6QCX|1|M, 6QCW|1|V+6QCW|1|R+6QCW|1|M, 6QCV|1|V+6QCV|1|R+6QCV|1|M, 6QCT|1|V, 6QCS|1|V+6QCS|1|R | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_45043.1 | NR_4.0_45043.2 | 3.99 | (8) 4WRT|1|V+4WRT|1|R, 5M3J|1|V+5M3J|1|R, 6QCS|1|V+6QCS|1|R, 6QCW|1|V+6QCW|1|R+6QCW|1|M, 4WSA|1|V+4WSA|1|R, 5MSG|1|V+5MSG|1|R, 6QCV|1|V+6QCV|1|R+6QCV|1|M, 6QCX|1|V+6QCX|1|R+6QCX|1|M | (1) 6QCT|1|V | (0) |
| NR_4.0_45043.1 | NR_4.0_57831.1 | 3.99 | (1) 6QCT|1|V | (8) 4WSA|1|V+4WSA|1|R, 5MSG|1|V+5MSG|1|R, 6QCV|1|V+6QCV|1|R+6QCV|1|M, 6QCX|1|V+6QCX|1|R+6QCX|1|M, 4WRT|1|V+4WRT|1|R, 5M3J|1|V+5M3J|1|R, 6QCS|1|V+6QCS|1|R, 6QCW|1|V+6QCW|1|R+6QCW|1|M | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6QCV|1|V+6QCV|1|R+6QCV|1|M | Crystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer and CTP | X-RAY DIFFRACTION | 3.24 | 14 |
| 2 | 6QCX|1|V+6QCX|1|R+6QCX|1|M | Crystal structure of influenza B polymerase initiation state with capped 15-mer RNA primer | X-RAY DIFFRACTION | 3.08 | 14 |
| 3 | 6QCW|1|V+6QCW|1|R+6QCW|1|M | Crystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer | X-RAY DIFFRACTION | 2.88 | 14 |
| 4 | 5MSG|1|V+5MSG|1|R | Influenza B polymerase bound to vRNA promoter and capped RNA primer | X-RAY DIFFRACTION | 3.8 | 14 |
| 5 | 5M3J|1|V+5M3J|1|R | Influenza B polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTD | X-RAY DIFFRACTION | 3.5 | 14 |
| 6 | 4WSA|1|V+4WSA|1|R | Crystal structure of Influenza B polymerase bound to the vRNA promoter (FluB1 form) | X-RAY DIFFRACTION | 3.4 | 14 |
| 7 | 6QCS|1|V+6QCS|1|R | Influenza B polymerase pre-initiation complex | ELECTRON MICROSCOPY | 3.1 | 14 |
| 8 | 4WRT|1|V+4WRT|1|R | Crystal structure of Influenza B polymerase with bound vRNA promoter (form FluB2) | X-RAY DIFFRACTION | 2.7 | 14 |
| 9 | 6QCT|1|V | Influenza B polymerase elongation complex | ELECTRON MICROSCOPY | 3.2 | 13 |