#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15B2T|1|A (rep)Guide RNAStreptococcus pyogenesCrystal structure of the Streptococcus pyogenes Cas9 VRER variant in complex with sgRNA and target DNA (TGCG PAM)X-ray diffraction2.22016-03-23
25B2R|1|AGuide RNAStreptococcus pyogenesCrystal structure of the Streptococcus pyogenes Cas9 VQR variant in complex with sgRNA and target DNA (TGA PAM)X-ray diffraction22016-03-23
35B2S|1|AGuide RNAStreptococcus pyogenesCrystal structure of the Streptococcus pyogenes Cas9 EQR variant in complex with sgRNA and target DNA (TGAG PAM)X-ray diffraction2.22016-03-23
44OO8|1|BRNA (97-MER)Crystal structure of Streptococcus pyogenes Cas9 in complex with guide RNA and target DNAX-ray diffraction2.52014-02-26
54OO8|1|ERNA (97-MER)Crystal structure of Streptococcus pyogenes Cas9 in complex with guide RNA and target DNAX-ray diffraction2.52014-02-26
66AI6|1|BRNA (81-MER)Streptococcus pyogenesCrystal structure of SpCas9-NGX-ray diffraction2.72018-10-31
75XBL|1|BRNA (98-MER)Streptococcus pyogenesStructure of nuclease in complex with associated proteinX-ray diffraction3.052017-06-14
86IFO|1|CRNA (99-MER)Streptococcus pyogenesCrystal structure of AcrIIA2-SpyCas9-sgRNA ternary complexX-ray diffraction3.312019-01-23
96IFO|1|DRNA (99-MER)Streptococcus pyogenesCrystal structure of AcrIIA2-SpyCas9-sgRNA ternary complexX-ray diffraction3.312019-01-23
108SRS|1|BgRNAStreptococcus pyogenesSpRY-Cas9:gRNA complex targeting TAC PAM DNAElectron microscopy2.792024-05-01
118T7S|1|BgRNAStreptococcus pyogenesSpRYmer bound to NAC PAM DNAElectron microscopy3.012024-05-01
128T6X|1|BgRNAStreptococcus pyogenesSpRY-Cas9:gRNA complex targeting TAC PAM DNA with 18 bp R-loopElectron microscopy3.082024-05-01
138T6T|1|BgRNAStreptococcus pyogenesSpRY-Cas9:gRNA complex targeting TAC PAM DNA with 13 bp R-loopElectron microscopy3.042024-05-01
148SPQ|1|BgRNAStreptococcus pyogenesSpRY-Cas9:gRNA complex targeting TGG PAM DNAElectron microscopy3.262024-05-01
158T6Y|1|BgRNAStreptococcus pyogenesSpRY-Cas9:gRNA complex bound to non-target DNA with 1 bp R-loopElectron microscopy2.882024-05-01
168T78|1|BgRNAStreptococcus pyogenesSpRY-Cas9:gRNA complex bound to non-target DNA with 8 bp R-loopElectron microscopy3.022024-05-01
178T7S|1|HgRNAStreptococcus pyogenesSpRYmer bound to NAC PAM DNAElectron microscopy3.012024-05-01
188T79|1|BgRNAStreptococcus pyogenesSpRY-Cas9:gRNA complex bound to non-target DNA with 10 bp R-loopElectron microscopy3.042024-05-08
198T6P|1|BgRNAStreptococcus pyogenesSpRY-Cas9:gRNA complex targeting TAC PAM DNA with 2 bp R-loopElectron microscopy3.152024-05-01
208T77|1|BgRNAStreptococcus pyogenesSpRY-Cas9:gRNA complex bound to non-target DNA with 6 bp R-loopElectron microscopy3.252024-05-01
218T6S|1|BgRNAStreptococcus pyogenesSpRY-Cas9:gRNA complex targeting TAC PAM DNA with 10 bp R-loopElectron microscopy3.282024-05-01
228SQH|1|BgRNAStreptococcus pyogenesSpRY-Cas9:gRNA complex targeting TTC PAM DNAElectron microscopy3.692024-05-01
238T76|1|BgRNAStreptococcus pyogenesSpRY-Cas9:gRNA complex targeting TAC PAM DNA with 3 bp R-loopElectron microscopy3.422024-05-01

Release history

Release3.3343.3353.3363.3373.3383.3393.3403.3413.3423.343
Date2024-05-082024-05-152024-05-222024-05-292024-06-052024-06-122024-06-192024-06-262024-07-032024-07-10

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
18T77|1|BSpRY-Cas9:gRNA complex bound to non-target DNA with 6 bp R-loopELECTRON MICROSCOPY3.2589
28T6Y|1|BSpRY-Cas9:gRNA complex bound to non-target DNA with 1 bp R-loopELECTRON MICROSCOPY2.8888
38T79|1|BSpRY-Cas9:gRNA complex bound to non-target DNA with 10 bp R-loopELECTRON MICROSCOPY3.0489
48T78|1|BSpRY-Cas9:gRNA complex bound to non-target DNA with 8 bp R-loopELECTRON MICROSCOPY3.0289
58T6S|1|BSpRY-Cas9:gRNA complex targeting TAC PAM DNA with 10 bp R-loopELECTRON MICROSCOPY3.2890
68T76|1|BSpRY-Cas9:gRNA complex targeting TAC PAM DNA with 3 bp R-loopELECTRON MICROSCOPY3.4288
78T6P|1|BSpRY-Cas9:gRNA complex targeting TAC PAM DNA with 2 bp R-loopELECTRON MICROSCOPY3.1588
88T6T|1|BSpRY-Cas9:gRNA complex targeting TAC PAM DNA with 13 bp R-loopELECTRON MICROSCOPY3.0495
98SQH|1|BSpRY-Cas9:gRNA complex targeting TTC PAM DNAELECTRON MICROSCOPY3.6998
108SPQ|1|BSpRY-Cas9:gRNA complex targeting TGG PAM DNAELECTRON MICROSCOPY3.2698
118SRS|1|BSpRY-Cas9:gRNA complex targeting TAC PAM DNAELECTRON MICROSCOPY2.7998
128T6X|1|BSpRY-Cas9:gRNA complex targeting TAC PAM DNA with 18 bp R-loopELECTRON MICROSCOPY3.0896
138T7S|1|BSpRYmer bound to NAC PAM DNAELECTRON MICROSCOPY3.0198
148T7S|1|HSpRYmer bound to NAC PAM DNAELECTRON MICROSCOPY3.0188
154OO8|1|ECrystal structure of Streptococcus pyogenes Cas9 in complex with guide RNA and target DNAX-RAY DIFFRACTION2.597
164OO8|1|BCrystal structure of Streptococcus pyogenes Cas9 in complex with guide RNA and target DNAX-RAY DIFFRACTION2.597
176AI6|1|BCrystal structure of SpCas9-NGX-RAY DIFFRACTION2.781
185B2T|1|ACrystal structure of the Streptococcus pyogenes Cas9 VRER variant in complex with sgRNA and target DNA (TGCG PAM)X-RAY DIFFRACTION2.281
195B2R|1|ACrystal structure of the Streptococcus pyogenes Cas9 VQR variant in complex with sgRNA and target DNA (TGA PAM)X-RAY DIFFRACTION281
205B2S|1|ACrystal structure of the Streptococcus pyogenes Cas9 EQR variant in complex with sgRNA and target DNA (TGAG PAM)X-RAY DIFFRACTION2.281
216IFO|1|CCrystal structure of AcrIIA2-SpyCas9-sgRNA ternary complexX-RAY DIFFRACTION3.3188
226IFO|1|DCrystal structure of AcrIIA2-SpyCas9-sgRNA ternary complexX-RAY DIFFRACTION3.3190
235XBL|1|BStructure of nuclease in complex with associated proteinX-RAY DIFFRACTION3.0588
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