Equivalence class NR_4.0_46995.18 Obsolete
| # | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
|---|---|---|---|---|---|---|---|
| 1 | 6ZMI|1|S2 (rep) | 18S ribosomal RNA | Homo sapiens | SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex | ELECTRON MICROSCOPY | 2.6 | 2020-08-19 |
| 2 | 6ZM7|1|S2 | 18S ribosomal RNA | Homo sapiens | SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex | ELECTRON MICROSCOPY | 2.7 | 2020-07-29 |
| 3 | 6ZLW|1|2 | 18S ribosomal RNA | Homo sapiens | SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunit | ELECTRON MICROSCOPY | 2.6 | 2020-07-29 |
| 4 | 6ZVH|1|2 | 18S rRNA | Homo sapiens | EDF1-ribosome complex | ELECTRON MICROSCOPY | 2.9 | 2020-08-19 |
| 5 | 6Z6N|1|S2 | 18S rRNA | Homo sapiens | Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1) | ELECTRON MICROSCOPY | 2.9 | 2020-07-29 |
| 6 | 6ZOJ|1|2 | 18S ribosomal RNA | Homo sapiens | SARS-CoV-2-Nsp1-40S complex, composite map | ELECTRON MICROSCOPY | 2.8 | 2020-07-22 |
| 7 | 6ZP4|1|2 | 18S ribosomal RNA | Homo sapiens | SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2 | ELECTRON MICROSCOPY | 2.9 | 2020-07-29 |
| 8 | 6QZP|1|S2 | 18S rRNA (1740-MER) | Homo sapiens | High-resolution cryo-EM structure of the human 80S ribosome | ELECTRON MICROSCOPY | 2.9 | 2019-04-24 |
| 9 | 6ZME|1|S2 | 18S ribosomal RNA | Homo sapiens | SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex | ELECTRON MICROSCOPY | 3 | 2020-08-12 |
| 10 | 6Z6L|1|S2 | 18S rRNA | Homo sapiens | Cryo-EM structure of human CCDC124 bound to 80S ribosomes | ELECTRON MICROSCOPY | 3 | 2020-07-29 |
| 11 | 6EK0|1|S2 | 18S ribosomal RNA | Homo sapiens | High-resolution cryo-EM structure of the human 80S ribosome | ELECTRON MICROSCOPY | 2.9 | 2018-01-24 |
| 12 | 6ZON|1|2 | 18S ribosomal RNA | Homo sapiens | SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1 | ELECTRON MICROSCOPY | 3 | 2020-07-29 |
| 13 | 7K5I|1|2 | 40S ribosomal rRNA18S | Homo sapiens | SARS-COV-2 nsp1 in complex with human 40S ribosome | ELECTRON MICROSCOPY | 2.9 | 2020-10-14 |
| 14 | 6ZMO|1|S2 | 18S ribosomal RNA | Homo sapiens | SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex | ELECTRON MICROSCOPY | 3.1 | 2020-08-19 |
| 15 | 6Z6M|1|S2 | 18S rRNA | Homo sapiens | Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1 | ELECTRON MICROSCOPY | 3.1 | 2020-07-29 |
| 16 | 6Y2L|1|S2 | 18S ribosomal RNA | Homo sapiens | Structure of human ribosome in POST state | ELECTRON MICROSCOPY | 3 | 2020-04-15 |
| 17 | 6XA1|1|S2 | 18S rRNA | Homo sapiens | Structure of a drug-like compound stalled human translation termination complex | ELECTRON MICROSCOPY | 2.8 | 2020-10-07 |
| 18 | 6OM0|1|S2 | 18S ribosomal RNA | Homo sapiens | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs | ELECTRON MICROSCOPY | 3.1 | 2019-06-19 |
| 19 | 6OLE|1|S2 | 18S ribosomal RNA | Homo sapiens | Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs | ELECTRON MICROSCOPY | 3.1 | 2019-06-19 |
| 20 | 6ZN5|1|2 | 18S ribosomal RNA | Homo sapiens | SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2 | ELECTRON MICROSCOPY | 3.2 | 2020-07-29 |
| 21 | 6Y0G|1|S2 | 18S ribosomal RNA | Homo sapiens | Structure of human ribosome in classical-PRE state | ELECTRON MICROSCOPY | 3.2 | 2020-04-15 |
| 22 | 6ZMT|1|2 | 18S ribosomal RNA | Homo sapiens | SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex | ELECTRON MICROSCOPY | 3 | 2020-08-19 |
| 23 | 7A09|1|2 | 18S ribosomal RNA | Homo sapiens | Structure of a human ABCE1-bound 43S pre-initiation complex - State III | ELECTRON MICROSCOPY | 3.5 | 2020-10-14 |
| 24 | 6OLG|1|B1 | 18S ribosomal RNA | Homo sapiens | Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA) | ELECTRON MICROSCOPY | 3.4 | 2019-06-19 |
| 25 | 6OLI|1|S2 | 18S ribosomal RNA | Homo sapiens | Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC) | ELECTRON MICROSCOPY | 3.5 | 2019-06-19 |
| 26 | 6ZMW|1|A | 18S rRNA | Homo sapiens | Structure of a human 48S translational initiation complex | ELECTRON MICROSCOPY | 3.7 | 2020-09-23 |
| 27 | 6Y57|1|S2 | 18S ribosomal RNA | Homo sapiens | Structure of human ribosome in hybrid-PRE state | ELECTRON MICROSCOPY | 3.5 | 2020-04-15 |
| 28 | 6ZVJ|1|2 | 18S ribosomal RNA | Homo sapiens | Structure of a human ABCE1-bound 43S pre-initiation complex - State II | ELECTRON MICROSCOPY | 3.8 | 2020-10-07 |
| 29 | 6G18|1|2 | pre-18S ribosomal RNA | Homo sapiens | Cryo-EM structure of a late human pre-40S ribosomal subunit - State C | ELECTRON MICROSCOPY | 3.6 | 2018-06-06 |
| 30 | 6G5I|1|2 | 18S ribosomal RNA | Homo sapiens | Cryo-EM structure of a late human pre-40S ribosomal subunit - State R | ELECTRON MICROSCOPY | 3.5 | 2018-06-06 |
| 31 | 4UG0|1|S2 | 18S ribosomal RNA | Homo sapiens | STRUCTURE OF THE HUMAN 80S RIBOSOME | ELECTRON MICROSCOPY | 3.6 | 2015-06-10 |
| 32 | 6IP8|1|2m | 18S ribosomal RNA | Homo sapiens | Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv) | ELECTRON MICROSCOPY | 3.9 | 2019-05-29 |
| 33 | 6IP5|1|2m | 18S ribosomal RNA | Homo sapiens | Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii) | ELECTRON MICROSCOPY | 3.9 | 2019-05-29 |
| 34 | 6G5H|1|2 | 18S ribosomal RNA | Homo sapiens | Cryo-EM structure of a late human pre-40S ribosomal subunit - Mature | ELECTRON MICROSCOPY | 3.6 | 2018-06-06 |
| 35 | 6ZOK|1|2 | 18S ribosomal RNA | Homo sapiens | SARS-CoV-2-Nsp1-40S complex, focused on body | ELECTRON MICROSCOPY | 2.8 | 2020-07-29 |
| 36 | 6OM7|1|S2 | 18S ribosomal RNA | Homo sapiens | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs | ELECTRON MICROSCOPY | 3.7 | 2019-06-19 |
| 37 | 6OLZ|1|B1 | 18S ribosomal RNA | Homo sapiens | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA | ELECTRON MICROSCOPY | 3.9 | 2019-06-19 |
| 38 | 5AJ0|1|B1 | 18S ribosomal RNA | Homo sapiens | Cryo electron microscopy of actively translating human polysomes (POST state). | ELECTRON MICROSCOPY | 3.5 | 2015-05-20 |
| 39 | 6OLF|1|S2 | 18S ribosomal RNA | Homo sapiens | Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs | ELECTRON MICROSCOPY | 3.9 | 2019-06-19 |
| 40 | 5A2Q|1|2 | 18S RRNA | Homo sapiens | Structure of the HCV IRES bound to the human ribosome | ELECTRON MICROSCOPY | 3.9 | 2015-07-15 |
| 41 | 6YBW|1|A | 18S rRNA | Homo sapiens | Structure of a human 48S translational initiation complex - 40S body | ELECTRON MICROSCOPY | 3.1 | 2020-09-16 |
| 42 | 6G4S|1|2 | pre-18S ribosomal RNA | Homo sapiens | Cryo-EM structure of a late human pre-40S ribosomal subunit - State B | ELECTRON MICROSCOPY | 4 | 2018-06-06 |
| 43 | 5LKS|1|S2 | 18S ribosomal RNA | Homo sapiens | Structure-function insights reveal the human ribosome as a cancer target for antibiotics | ELECTRON MICROSCOPY | 3.6 | 2017-04-26 |
| 44 | 6ZOL|1|2 | 18S ribosomal RNA | Homo sapiens | SARS-CoV-2-Nsp1-40S complex, focused on head | ELECTRON MICROSCOPY | 2.8 | 2020-07-22 |
| 45 | 5T2C|1|AA | 18S rRNA | Homo sapiens | CryoEM structure of the human ribosome at 3.6 Angstrom resolution | ELECTRON MICROSCOPY | 3.6 | 2017-01-25 |
| 46 | 5A8L|1|B | HUMAN 18S RIBOSOMAL RNA | Homo sapiens | Human eRF1 and the hCMV nascent peptide in the translation termination complex | ELECTRON MICROSCOPY | 3.8 | 2015-12-02 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_46995.18 | NR_4.0_46995.17 | 3.151 | (46) 7A09|1|2, 6QZP|1|S2, 6Z6N|1|S2, 5LKS|1|S2, 6ZN5|1|2, 6IP8|1|2m, 6ZVH|1|2, 6OM0|1|S2, 6Z6L|1|S2, 5A8L|1|B, 6ZMT|1|2, 6G5I|1|2, 6ZP4|1|2, 6OLZ|1|B1, 6YBW|1|A, 5A2Q|1|2, 6ZMO|1|S2, 6G5H|1|2, 6OLI|1|S2, 6Y57|1|S2, 4UG0|1|S2, 6ZMI|1|S2, 6G4S|1|2, 6ZON|1|2, 6Y2L|1|S2, 6ZME|1|S2, 6G18|1|2, 6ZOL|1|2, 6OLG|1|B1, 7K5I|1|2, 6XA1|1|S2, 6ZLW|1|2, 5T2C|1|AA, 6ZOJ|1|2, 6OLE|1|S2, 6ZVJ|1|2, 6OM7|1|S2, 6Z6M|1|S2, 5AJ0|1|B1, 6ZMW|1|A, 6IP5|1|2m, 6Y0G|1|S2, 6ZM7|1|S2, 6EK0|1|S2, 6ZOK|1|2, 6OLF|1|S2 | (0) | (4) 1VX2|1|2, 3J74|1|S2, 3J73|1|S2, 1VX5|1|2 |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_46995.18 | NR_4.0_46995.19 | 3.155 | (46) 6G5I|1|2, 6ZMT|1|2, 6OLF|1|S2, 6ZOK|1|2, 6OM0|1|S2, 6ZVH|1|2, 6Y0G|1|S2, 5A8L|1|B, 6Z6L|1|S2, 6EK0|1|S2, 6ZM7|1|S2, 6G5H|1|2, 6ZMO|1|S2, 6OLE|1|S2, 6ZOJ|1|2, 6OLZ|1|B1, 6ZP4|1|2, 6XA1|1|S2, 5A2Q|1|2, 6YBW|1|A, 5T2C|1|AA, 6ZLW|1|2, 7K5I|1|2, 6ZMI|1|S2, 6IP8|1|2m, 6ZN5|1|2, 6OLI|1|S2, 6ZON|1|2, 6QZP|1|S2, 4UG0|1|S2, 6Y57|1|S2, 5LKS|1|S2, 6Z6N|1|S2, 6G4S|1|2, 7A09|1|2, 6ZME|1|S2, 6IP5|1|2m, 6ZMW|1|A, 6OLG|1|B1, 6ZOL|1|2, 6OM7|1|S2, 6Y2L|1|S2, 5AJ0|1|B1, 6Z6M|1|S2, 6G18|1|2, 6ZVJ|1|2 | (0) | (4) 6ZXD|1|2, 6ZXE|1|2, 6ZXG|1|2, 6ZXF|1|2 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5A8L|1|B | Human eRF1 and the hCMV nascent peptide in the translation termination complex | ELECTRON MICROSCOPY | 3.8 | 67 |
| 2 | 6IP8|1|2m | Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv) | ELECTRON MICROSCOPY | 3.9 | 1742 |
| 3 | 6IP5|1|2m | Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii) | ELECTRON MICROSCOPY | 3.9 | 1742 |
| 4 | 5LKS|1|S2 | Structure-function insights reveal the human ribosome as a cancer target for antibiotics | ELECTRON MICROSCOPY | 3.6 | 1742 |
| 5 | 4UG0|1|S2 | STRUCTURE OF THE HUMAN 80S RIBOSOME | ELECTRON MICROSCOPY | 3.6 | 1742 |
| 6 | 5T2C|1|AA | CryoEM structure of the human ribosome at 3.6 Angstrom resolution | ELECTRON MICROSCOPY | 3.6 | 1742 |
| 7 | 6OLZ|1|B1 | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA | ELECTRON MICROSCOPY | 3.9 | 1708 |
| 8 | 6OLG|1|B1 | Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA) | ELECTRON MICROSCOPY | 3.4 | 1708 |
| 9 | 5AJ0|1|B1 | Cryo electron microscopy of actively translating human polysomes (POST state). | ELECTRON MICROSCOPY | 3.5 | 1708 |
| 10 | 6Y0G|1|S2 | Structure of human ribosome in classical-PRE state | ELECTRON MICROSCOPY | 3.2 | 1697 |
| 11 | 6Y57|1|S2 | Structure of human ribosome in hybrid-PRE state | ELECTRON MICROSCOPY | 3.5 | 1658 |
| 12 | 6OLI|1|S2 | Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC) | ELECTRON MICROSCOPY | 3.5 | 1680 |
| 13 | 6OLE|1|S2 | Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs | ELECTRON MICROSCOPY | 3.1 | 1680 |
| 14 | 6OLF|1|S2 | Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs | ELECTRON MICROSCOPY | 3.9 | 1680 |
| 15 | 6Y2L|1|S2 | Structure of human ribosome in POST state | ELECTRON MICROSCOPY | 3 | 1713 |
| 16 | 6XA1|1|S2 | Structure of a drug-like compound stalled human translation termination complex | ELECTRON MICROSCOPY | 2.8 | 1512 |
| 17 | 6ZVH|1|2 | EDF1-ribosome complex | ELECTRON MICROSCOPY | 2.9 | 1740 |
| 18 | 6QZP|1|S2 | High-resolution cryo-EM structure of the human 80S ribosome | ELECTRON MICROSCOPY | 2.9 | 1707 |
| 19 | 6EK0|1|S2 | High-resolution cryo-EM structure of the human 80S ribosome | ELECTRON MICROSCOPY | 2.9 | 1706 |
| 20 | 6Z6N|1|S2 | Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1) | ELECTRON MICROSCOPY | 2.9 | 1740 |
| 21 | 6Z6L|1|S2 | Cryo-EM structure of human CCDC124 bound to 80S ribosomes | ELECTRON MICROSCOPY | 3 | 1740 |
| 22 | 6ZMO|1|S2 | SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex | ELECTRON MICROSCOPY | 3.1 | 1740 |
| 23 | 6ZMI|1|S2 | SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex | ELECTRON MICROSCOPY | 2.6 | 1740 |
| 24 | 6ZM7|1|S2 | SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex | ELECTRON MICROSCOPY | 2.7 | 1740 |
| 25 | 6ZME|1|S2 | SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex | ELECTRON MICROSCOPY | 3 | 1740 |
| 26 | 6YBW|1|A | Structure of a human 48S translational initiation complex - 40S body | ELECTRON MICROSCOPY | 3.1 | 1196 |
| 27 | 6ZMW|1|A | Structure of a human 48S translational initiation complex | ELECTRON MICROSCOPY | 3.7 | 1691 |
| 28 | 6Z6M|1|S2 | Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1 | ELECTRON MICROSCOPY | 3.1 | 1740 |
| 29 | 6G5H|1|2 | Cryo-EM structure of a late human pre-40S ribosomal subunit - Mature | ELECTRON MICROSCOPY | 3.6 | 1665 |
| 30 | 6ZVJ|1|2 | Structure of a human ABCE1-bound 43S pre-initiation complex - State II | ELECTRON MICROSCOPY | 3.8 | 1720 |
| 31 | 6ZON|1|2 | SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1 | ELECTRON MICROSCOPY | 3 | 1721 |
| 32 | 5A2Q|1|2 | Structure of the HCV IRES bound to the human ribosome | ELECTRON MICROSCOPY | 3.9 | 1665 |
| 33 | 6ZOK|1|2 | SARS-CoV-2-Nsp1-40S complex, focused on body | ELECTRON MICROSCOPY | 2.8 | 1232 |
| 34 | 6ZOJ|1|2 | SARS-CoV-2-Nsp1-40S complex, composite map | ELECTRON MICROSCOPY | 2.8 | 1704 |
| 35 | 6ZN5|1|2 | SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2 | ELECTRON MICROSCOPY | 3.2 | 1671 |
| 36 | 6ZLW|1|2 | SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunit | ELECTRON MICROSCOPY | 2.6 | 1665 |
| 37 | 7K5I|1|2 | SARS-COV-2 nsp1 in complex with human 40S ribosome | ELECTRON MICROSCOPY | 2.9 | 1665 |
| 38 | 6ZMT|1|2 | SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex | ELECTRON MICROSCOPY | 3 | 1569 |
| 39 | 7A09|1|2 | Structure of a human ABCE1-bound 43S pre-initiation complex - State III | ELECTRON MICROSCOPY | 3.5 | 1721 |
| 40 | 6ZP4|1|2 | SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2 | ELECTRON MICROSCOPY | 2.9 | 1721 |
| 41 | 6ZOL|1|2 | SARS-CoV-2-Nsp1-40S complex, focused on head | ELECTRON MICROSCOPY | 2.8 | 472 |
| 42 | 6G5I|1|2 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State R | ELECTRON MICROSCOPY | 3.5 | 1657 |
| 43 | 6G18|1|2 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State C | ELECTRON MICROSCOPY | 3.6 | 1658 |
| 44 | 6OM7|1|S2 | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs | ELECTRON MICROSCOPY | 3.7 | 1680 |
| 45 | 6OM0|1|S2 | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs | ELECTRON MICROSCOPY | 3.1 | 1680 |
| 46 | 6G4S|1|2 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State B | ELECTRON MICROSCOPY | 4 | 1613 |