NR_4.0_46995.18

Members (46)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Å	Date
1	6ZMI\|1\|S2 (rep)	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex	Electron microscopy	2.6	2020-08-19
2	6ZM7\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex	Electron microscopy	2.7	2020-07-29
3	6ZLW\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunit	Electron microscopy	2.6	2020-07-29
4	6ZVH\|1\|2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	EDF1-ribosome complex	Electron microscopy	2.9	2020-08-19
5	6Z6N\|1\|S2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)	Electron microscopy	2.9	2020-07-29
6	6ZOJ\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2-Nsp1-40S complex, composite map	Electron microscopy	2.8	2020-07-22
7	6ZP4\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2	Electron microscopy	2.9	2020-07-29
8	6QZP\|1\|S2	Small subunit ribosomal RNA	18S rRNA (1740-MER)	Homo sapiens	Eukarya	RF01960	High-resolution cryo-EM structure of the human 80S ribosome	Electron microscopy	2.9	2019-04-24
9	6ZME\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex	Electron microscopy	3	2020-08-12
10	6Z6L\|1\|S2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of human CCDC124 bound to 80S ribosomes	Electron microscopy	3	2020-07-29
11	6EK0\|1\|S2		18S ribosomal RNA	Homo sapiens	Eukarya		High-resolution cryo-EM structure of the human 80S ribosome	Electron microscopy	2.9	2018-01-24
12	6ZON\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1	Electron microscopy	3	2020-07-29
13	7K5I\|1\|2	Small subunit ribosomal RNA	40S ribosomal rRNA18S	Homo sapiens	Eukarya	RF01960	SARS-COV-2 nsp1 in complex with human 40S ribosome	Electron microscopy	2.9	2020-10-14
14	6ZMO\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex	Electron microscopy	3.1	2020-08-19
15	6Z6M\|1\|S2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1	Electron microscopy	3.1	2020-07-29
16	6Y2L\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Structure of human ribosome in POST state	Electron microscopy	3	2020-04-15
17	6XA1\|1\|S2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Structure of a drug-like compound stalled human translation termination complex	Electron microscopy	2.8	2020-10-07
18	6OM0\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs	Electron microscopy	3.1	2019-06-19
19	6OLE\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs	Electron microscopy	3.1	2019-06-19
20	6ZN5\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2	Electron microscopy	3.2	2020-07-29
21	6Y0G\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Structure of human ribosome in classical-PRE state	Electron microscopy	3.2	2020-04-15
22	6ZMT\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex	Electron microscopy	3	2020-08-19
23	7A09\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Structure of a human ABCE1-bound 43S pre-initiation complex - State III	Electron microscopy	3.5	2020-10-14
24	6OLG\|1\|B1	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)	Electron microscopy	3.4	2019-06-19
25	6OLI\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)	Electron microscopy	3.5	2019-06-19
26	6ZMW\|1\|A	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Structure of a human 48S translational initiation complex	Electron microscopy	3.7	2020-09-23
27	6Y57\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Structure of human ribosome in hybrid-PRE state	Electron microscopy	3.5	2020-04-15
28	6ZVJ\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Structure of a human ABCE1-bound 43S pre-initiation complex - State II	Electron microscopy	3.8	2020-10-07
29	6G18\|1\|2	Small subunit ribosomal RNA	pre-18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of a late human pre-40S ribosomal subunit - State C	Electron microscopy	3.6	2018-06-06
30	6G5I\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of a late human pre-40S ribosomal subunit - State R	Electron microscopy	3.5	2018-06-06
31	4UG0\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	STRUCTURE OF THE HUMAN 80S RIBOSOME	Electron microscopy	3.6	2015-06-10
32	6IP8\|1\|2m	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)	Electron microscopy	3.9	2019-05-29
33	6IP5\|1\|2m	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)	Electron microscopy	3.9	2019-05-29
34	6G5H\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of a late human pre-40S ribosomal subunit - Mature	Electron microscopy	3.6	2018-06-06
35	6ZOK\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2-Nsp1-40S complex, focused on body	Electron microscopy	2.8	2020-07-29
36	6OM7\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs	Electron microscopy	3.7	2019-06-19
37	6OLZ\|1\|B1	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA	Electron microscopy	3.9	2019-06-19
38	5AJ0\|1\|B1	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Cryo electron microscopy of actively translating human polysomes (POST state).	Electron microscopy	3.5	2015-05-20
39	6OLF\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs	Electron microscopy	3.9	2019-06-19
40	5A2Q\|1\|2	Small subunit ribosomal RNA	18S RRNA	Homo sapiens	Eukarya	RF01960	Structure of the HCV IRES bound to the human ribosome	Electron microscopy	3.9	2015-07-15
41	6YBW\|1\|A	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Structure of a human 48S translational initiation complex - 40S body	Electron microscopy	3.1	2020-09-16
42	6G4S\|1\|2	Small subunit ribosomal RNA	pre-18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of a late human pre-40S ribosomal subunit - State B	Electron microscopy	4	2018-06-06
43	5LKS\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Structure-function insights reveal the human ribosome as a cancer target for antibiotics	Electron microscopy	3.6	2017-04-26
44	6ZOL\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2-Nsp1-40S complex, focused on head	Electron microscopy	2.8	2020-07-22
45	5T2C\|1\|AA	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	CryoEM structure of the human ribosome at 3.6 Angstrom resolution	Electron microscopy	3.6	2017-01-25
46	5A8L\|1\|B	Small subunit ribosomal RNA	HUMAN 18S RIBOSOMAL RNA	Homo sapiens	Eukarya	RF01960	Human eRF1 and the hCMV nascent peptide in the translation termination complex	Electron microscopy	3.8	2015-12-02

Release history

Release	3.151	3.152	3.153	3.154
Date	2020-11-04	2020-11-11	2020-11-18	2020-11-25

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_4.0_46995.18	NR_4.0_46995.17	3.151	(46) 6ZMI\|1\|S2, 6G4S\|1\|2, 6ZON\|1\|2, 6OLI\|1\|S2, 6Y57\|1\|S2, 4UG0\|1\|S2, 6ZME\|1\|S2, 6G18\|1\|2, 6ZOL\|1\|2, 6OLG\|1\|B1, 6Y2L\|1\|S2, 6ZM7\|1\|S2, 6EK0\|1\|S2, 6ZOK\|1\|2, 6OLF\|1\|S2, 6Y0G\|1\|S2, 6Z6N\|1\|S2, 5LKS\|1\|S2, 6ZN5\|1\|2, 6IP8\|1\|2m, 7A09\|1\|2, 6QZP\|1\|S2, 6Z6M\|1\|S2, 5AJ0\|1\|B1, 6ZMW\|1\|A, 6IP5\|1\|2m, 6ZVJ\|1\|2, 6OM7\|1\|S2, 5A8L\|1\|B, 6ZMT\|1\|2, 6G5I\|1\|2, 6ZVH\|1\|2, 6OM0\|1\|S2, 6Z6L\|1\|S2, 6ZMO\|1\|S2, 6G5H\|1\|2, 6ZP4\|1\|2, 6OLZ\|1\|B1, 6YBW\|1\|A, 5A2Q\|1\|2, 6ZLW\|1\|2, 5T2C\|1\|AA, 6ZOJ\|1\|2, 6OLE\|1\|S2, 7K5I\|1\|2, 6XA1\|1\|S2	(0)	(4) 3J73\|1\|S2, 1VX5\|1\|2, 1VX2\|1\|2, 3J74\|1\|S2

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_4.0_46995.18	NR_4.0_46995.19	3.155	(46) 6ZN5\|1\|2, 6OLI\|1\|S2, 6ZON\|1\|2, 6QZP\|1\|S2, 4UG0\|1\|S2, 7A09\|1\|2, 6Y57\|1\|S2, 5LKS\|1\|S2, 6Z6N\|1\|S2, 6G4S\|1\|2, 6ZMI\|1\|S2, 6IP8\|1\|2m, 6ZMW\|1\|A, 6OLG\|1\|B1, 6ZOL\|1\|2, 6OM7\|1\|S2, 6Y2L\|1\|S2, 5AJ0\|1\|B1, 6Z6M\|1\|S2, 6G18\|1\|2, 6ZME\|1\|S2, 6IP5\|1\|2m, 6ZVJ\|1\|2, 6ZMT\|1\|2, 6OLF\|1\|S2, 6ZOK\|1\|2, 6OM0\|1\|S2, 6Y0G\|1\|S2, 5A8L\|1\|B, 6Z6L\|1\|S2, 6EK0\|1\|S2, 6ZM7\|1\|S2, 6G5I\|1\|2, 6ZVH\|1\|2, 6OLE\|1\|S2, 6ZOJ\|1\|2, 6OLZ\|1\|B1, 6ZP4\|1\|2, 6XA1\|1\|S2, 5A2Q\|1\|2, 6YBW\|1\|A, 5T2C\|1\|AA, 6ZLW\|1\|2, 6G5H\|1\|2, 6ZMO\|1\|S2, 7K5I\|1\|2	(0)	(4) 6ZXF\|1\|2, 6ZXG\|1\|2, 6ZXE\|1\|2, 6ZXD\|1\|2

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	5A8L\|1\|B	Human eRF1 and the hCMV nascent peptide in the translation termination complex	ELECTRON MICROSCOPY	3.8	67
2	6IP8\|1\|2m	Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)	ELECTRON MICROSCOPY	3.9	1742
3	6IP5\|1\|2m	Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)	ELECTRON MICROSCOPY	3.9	1742
4	5LKS\|1\|S2	Structure-function insights reveal the human ribosome as a cancer target for antibiotics	ELECTRON MICROSCOPY	3.6	1742
5	4UG0\|1\|S2	STRUCTURE OF THE HUMAN 80S RIBOSOME	ELECTRON MICROSCOPY	3.6	1742
6	5T2C\|1\|AA	CryoEM structure of the human ribosome at 3.6 Angstrom resolution	ELECTRON MICROSCOPY	3.6	1742
7	6OLZ\|1\|B1	Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA	ELECTRON MICROSCOPY	3.9	1708
8	6OLG\|1\|B1	Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)	ELECTRON MICROSCOPY	3.4	1708
9	5AJ0\|1\|B1	Cryo electron microscopy of actively translating human polysomes (POST state).	ELECTRON MICROSCOPY	3.5	1708
10	6Y0G\|1\|S2	Structure of human ribosome in classical-PRE state	ELECTRON MICROSCOPY	3.2	1697
11	6Y57\|1\|S2	Structure of human ribosome in hybrid-PRE state	ELECTRON MICROSCOPY	3.5	1658
12	6OLI\|1\|S2	Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)	ELECTRON MICROSCOPY	3.5	1680
13	6OLE\|1\|S2	Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs	ELECTRON MICROSCOPY	3.1	1680
14	6OLF\|1\|S2	Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs	ELECTRON MICROSCOPY	3.9	1680
15	6Y2L\|1\|S2	Structure of human ribosome in POST state	ELECTRON MICROSCOPY	3	1713
16	6XA1\|1\|S2	Structure of a drug-like compound stalled human translation termination complex	ELECTRON MICROSCOPY	2.8	1512
17	6ZVH\|1\|2	EDF1-ribosome complex	ELECTRON MICROSCOPY	2.9	1740
18	6QZP\|1\|S2	High-resolution cryo-EM structure of the human 80S ribosome	ELECTRON MICROSCOPY	2.9	1707
19	6EK0\|1\|S2	High-resolution cryo-EM structure of the human 80S ribosome	ELECTRON MICROSCOPY	2.9	1706
20	6Z6N\|1\|S2	Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)	ELECTRON MICROSCOPY	2.9	1740
21	6Z6L\|1\|S2	Cryo-EM structure of human CCDC124 bound to 80S ribosomes	ELECTRON MICROSCOPY	3	1740
22	6ZMO\|1\|S2	SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex	ELECTRON MICROSCOPY	3.1	1740
23	6ZMI\|1\|S2	SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex	ELECTRON MICROSCOPY	2.6	1740
24	6ZM7\|1\|S2	SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex	ELECTRON MICROSCOPY	2.7	1740
25	6ZME\|1\|S2	SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex	ELECTRON MICROSCOPY	3	1740
26	6YBW\|1\|A	Structure of a human 48S translational initiation complex - 40S body	ELECTRON MICROSCOPY	3.1	1196
27	6ZMW\|1\|A	Structure of a human 48S translational initiation complex	ELECTRON MICROSCOPY	3.7	1691
28	6Z6M\|1\|S2	Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1	ELECTRON MICROSCOPY	3.1	1740
29	6G5H\|1\|2	Cryo-EM structure of a late human pre-40S ribosomal subunit - Mature	ELECTRON MICROSCOPY	3.6	1665
30	6ZVJ\|1\|2	Structure of a human ABCE1-bound 43S pre-initiation complex - State II	ELECTRON MICROSCOPY	3.8	1720
31	6ZON\|1\|2	SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1	ELECTRON MICROSCOPY	3	1721
32	5A2Q\|1\|2	Structure of the HCV IRES bound to the human ribosome	ELECTRON MICROSCOPY	3.9	1665
33	6ZOK\|1\|2	SARS-CoV-2-Nsp1-40S complex, focused on body	ELECTRON MICROSCOPY	2.8	1232
34	6ZOJ\|1\|2	SARS-CoV-2-Nsp1-40S complex, composite map	ELECTRON MICROSCOPY	2.8	1704
35	6ZN5\|1\|2	SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2	ELECTRON MICROSCOPY	3.2	1671
36	6ZLW\|1\|2	SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunit	ELECTRON MICROSCOPY	2.6	1665
37	7K5I\|1\|2	SARS-COV-2 nsp1 in complex with human 40S ribosome	ELECTRON MICROSCOPY	2.9	1665
38	6ZMT\|1\|2	SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex	ELECTRON MICROSCOPY	3	1569
39	7A09\|1\|2	Structure of a human ABCE1-bound 43S pre-initiation complex - State III	ELECTRON MICROSCOPY	3.5	1721
40	6ZP4\|1\|2	SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2	ELECTRON MICROSCOPY	2.9	1721
41	6ZOL\|1\|2	SARS-CoV-2-Nsp1-40S complex, focused on head	ELECTRON MICROSCOPY	2.8	472
42	6G5I\|1\|2	Cryo-EM structure of a late human pre-40S ribosomal subunit - State R	ELECTRON MICROSCOPY	3.5	1657
43	6G18\|1\|2	Cryo-EM structure of a late human pre-40S ribosomal subunit - State C	ELECTRON MICROSCOPY	3.6	1658
44	6OM7\|1\|S2	Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs	ELECTRON MICROSCOPY	3.7	1680
45	6OM0\|1\|S2	Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs	ELECTRON MICROSCOPY	3.1	1680
46	6G4S\|1\|2	Cryo-EM structure of a late human pre-40S ribosomal subunit - State B	ELECTRON MICROSCOPY	4	1613

Equivalence class NR_4.0_46995.18 Obsolete

Release history

Parents

Children