Equivalence class NR_4.0_46995.38 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8GLP|1|S2 (rep) | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure) | Electron microscopy | 1.67 | 2023-04-19 |
| 2 | 8YOO|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline | Electron microscopy | 2 | 2024-07-10 |
| 3 | 8QOI|1|S2 | Small subunit ribosomal RNA | 18S rRNA (1740-MER) | Homo sapiens | Eukarya | RF01960 | Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA | Electron microscopy | 1.9 | 2024-06-12 |
| 4 | 8YOP|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline | Electron microscopy | 2.2 | 2024-07-10 |
| 5 | 8K2C|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of the human 80S ribosome with Tigecycline | Electron microscopy | 2.4 | 2024-07-10 |
| 6 | 8XSX|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2 | Electron microscopy | 2.4 | 2024-07-10 |
| 7 | 7R4X|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map | Electron microscopy | 2.15 | 2023-02-22 |
| 8 | 8IFE|1|2m | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Arbekacin-added human 80S ribosome | Electron microscopy | 2.57 | 2024-02-14 |
| 9 | 8IFD|1|2m | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Dibekacin-added human 80S ribosome | Electron microscopy | 2.59 | 2024-02-14 |
| 10 | 8G5Y|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state) | Electron microscopy | 2.29 | 2023-04-19 |
| 11 | 6ZMI|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex | Electron microscopy | 2.6 | 2020-08-19 |
| 12 | 7XNY|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells | Electron microscopy | 2.5 | 2023-04-05 |
| 13 | 8JDK|1|w | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU) | Electron microscopy | 2.26 | 2023-12-06 |
| 14 | 6ZM7|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex | Electron microscopy | 2.7 | 2020-07-29 |
| 15 | 8T4S|1|2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit | Electron microscopy | 2.6 | 2023-10-04 |
| 16 | 8PPL|1|A2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | MERS-CoV Nsp1 bound to the human 43S pre-initiation complex | Electron microscopy | 2.65 | 2023-10-18 |
| 17 | 6ZLW|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunit | Electron microscopy | 2.6 | 2020-07-29 |
| 18 | 7XNX|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells | Electron microscopy | 2.7 | 2023-04-05 |
| 19 | 8JDL|1|w | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state) | Electron microscopy | 2.42 | 2023-12-06 |
| 20 | 8JDJ|1|w | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU) | Electron microscopy | 2.5 | 2023-12-06 |
| 21 | 6ZVH|1|2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | EDF1-ribosome complex | Electron microscopy | 2.9 | 2020-08-19 |
| 22 | 6Z6N|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1) | Electron microscopy | 2.9 | 2020-07-29 |
| 23 | 8G60|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state) | Electron microscopy | 2.54 | 2023-04-19 |
| 24 | 8G5Z|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state) | Electron microscopy | 2.64 | 2023-04-19 |
| 25 | 6ZOJ|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | SARS-CoV-2-Nsp1-40S complex, composite map | Electron microscopy | 2.8 | 2020-07-22 |
| 26 | 6ZP4|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2 | Electron microscopy | 2.9 | 2020-07-29 |
| 27 | 6ZXG|1|2 | Small subunit ribosomal RNA | pre-18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1 | Electron microscopy | 2.6 | 2020-12-02 |
| 28 | 6QZP|1|S2 | Small subunit ribosomal RNA | 18S rRNA (1740-MER) | Homo sapiens | Eukarya | RF01960 | High-resolution cryo-EM structure of the human 80S ribosome | Electron microscopy | 2.9 | 2019-04-24 |
| 29 | 6ZME|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex | Electron microscopy | 3 | 2020-08-12 |
| 30 | 6Z6L|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of human CCDC124 bound to 80S ribosomes | Electron microscopy | 3 | 2020-07-29 |
| 31 | 8XSY|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled) | Electron microscopy | 3 | 2024-07-10 |
| 32 | 6ZV6|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage) | Electron microscopy | 2.9 | 2021-05-12 |
| 33 | 6ZON|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1 | Electron microscopy | 3 | 2020-07-29 |
| 34 | 8XXL|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of the human 40S ribosome with PDCD4 | Electron microscopy | 2.9 | 2024-05-01 |
| 35 | 6ZXH|1|2 | Small subunit ribosomal RNA | pre-18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2 | Electron microscopy | 2.7 | 2020-12-16 |
| 36 | 7QVP|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Human collided disome (di-ribosome) stalled on XBP1 mRNA | Electron microscopy | 3 | 2022-10-12 |
| 37 | 7K5I|1|2 | Small subunit ribosomal RNA | 40S ribosomal rRNA18S | Homo sapiens | Eukarya | RF01960 | SARS-COV-2 nsp1 in complex with human 40S ribosome | Electron microscopy | 2.9 | 2020-10-14 |
| 38 | 8G6J|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2) | Electron microscopy | 2.8 | 2023-04-19 |
| 39 | 8JDM|1|w | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state) | Electron microscopy | 2.67 | 2023-12-06 |
| 40 | 7QVP|1|S3 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Human collided disome (di-ribosome) stalled on XBP1 mRNA | Electron microscopy | 3 | 2022-10-12 |
| 41 | 8PPK|1|2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit | Electron microscopy | 2.98 | 2023-10-18 |
| 42 | 6ZMO|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex | Electron microscopy | 3.1 | 2020-08-19 |
| 43 | 6Z6M|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1 | Electron microscopy | 3.1 | 2020-07-29 |
| 44 | 7MQA|1|L1 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of the human SSU processome, state post-A1 | Electron microscopy | 2.7 | 2021-09-22 |
| 45 | 8XSZ|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA | Electron microscopy | 3.2 | 2024-07-10 |
| 46 | 6ZXE|1|2 | Small subunit ribosomal RNA | pre-18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State F2 | Electron microscopy | 3 | 2020-12-02 |
| 47 | 6Y2L|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Structure of human ribosome in POST state | Electron microscopy | 3 | 2020-04-15 |
| 48 | 8G61|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state) | Electron microscopy | 2.94 | 2023-04-19 |
| 49 | 6ZUO|1|2 | Small subunit ribosomal RNA | pre-18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage) | Electron microscopy | 3.1 | 2021-05-12 |
| 50 | 6XA1|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Structure of a drug-like compound stalled human translation termination complex | Electron microscopy | 2.8 | 2020-10-07 |
| 51 | 6OM0|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs | Electron microscopy | 3.1 | 2019-06-19 |
| 52 | 8Y0X|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Dormant ribosome with SERBP1 | Electron microscopy | 3.3 | 2024-02-07 |
| 53 | 6OLE|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs | Electron microscopy | 3.1 | 2019-06-19 |
| 54 | 7WTZ|1|2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B2 | Electron microscopy | 3 | 2022-10-19 |
| 55 | 6ZN5|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2 | Electron microscopy | 3.2 | 2020-07-29 |
| 56 | 7WTU|1|2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1) | Electron microscopy | 3 | 2022-10-19 |
| 57 | 8XXM|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G | Electron microscopy | 3.2 | 2024-05-01 |
| 58 | 7WTX|1|2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B1 | Electron microscopy | 3.1 | 2022-10-19 |
| 59 | 6ZXD|1|2 | Small subunit ribosomal RNA | pre-18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1 | Electron microscopy | 3.2 | 2020-12-02 |
| 60 | 8Y0W|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | dormant ribosome with eIF5A, eEF2 and SERBP1 | Electron microscopy | 3.4 | 2024-02-07 |
| 61 | 6Y0G|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Structure of human ribosome in classical-PRE state | Electron microscopy | 3.2 | 2020-04-15 |
| 62 | 6ZMT|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex | Electron microscopy | 3 | 2020-08-19 |
| 63 | 7WTT|1|2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (with CK1) | Electron microscopy | 3.1 | 2022-10-19 |
| 64 | 7WTW|1|2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A3 | Electron microscopy | 3.2 | 2022-10-19 |
| 65 | 7A09|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Structure of a human ABCE1-bound 43S pre-initiation complex - State III | Electron microscopy | 3.5 | 2020-10-14 |
| 66 | 6OLG|1|B1 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA) | Electron microscopy | 3.4 | 2019-06-19 |
| 67 | 7TQL|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B. | Electron microscopy | 3.4 | 2022-04-27 |
| 68 | 8OZ0|1|W | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Structure of a human 48S translation initiation complex with eIF4F and eIF4A | Electron microscopy | 3.5 | 2024-02-07 |
| 69 | 7WU0|1|2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B3 | Electron microscopy | 3.3 | 2022-10-19 |
| 70 | 6OLI|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC) | Electron microscopy | 3.5 | 2019-06-19 |
| 71 | 8XXN|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of the human 43S ribosome with PDCD4 | Electron microscopy | 3.6 | 2024-05-01 |
| 72 | 7QP7|1|A | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Structure of the human 48S initiation complex in closed state (h48S AUG closed) | Electron microscopy | 3.7 | 2022-05-11 |
| 73 | 6ZMW|1|A | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Structure of a human 48S translational initiation complex | Electron microscopy | 3.7 | 2020-09-23 |
| 74 | 6Y57|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Structure of human ribosome in hybrid-PRE state | Electron microscopy | 3.5 | 2020-04-15 |
| 75 | 6ZVJ|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Structure of a human ABCE1-bound 43S pre-initiation complex - State II | Electron microscopy | 3.8 | 2020-10-07 |
| 76 | 6G18|1|2 | Small subunit ribosomal RNA | pre-18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State C | Electron microscopy | 3.6 | 2018-06-06 |
| 77 | 6G5I|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State R | Electron microscopy | 3.5 | 2018-06-06 |
| 78 | 4UG0|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | STRUCTURE OF THE HUMAN 80S RIBOSOME | Electron microscopy | 3.6 | 2015-06-10 |
| 79 | 6ZXF|1|2 | Small subunit ribosomal RNA | pre-18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State G | Electron microscopy | 3.7 | 2020-12-02 |
| 80 | 7WTS|1|2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of a human pre-40S ribosomal subunit - State UTP14 | Electron microscopy | 3.2 | 2022-10-19 |
| 81 | 6IP8|1|2m | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv) | Electron microscopy | 3.9 | 2019-05-29 |
| 82 | 6IP5|1|2m | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii) | Electron microscopy | 3.9 | 2019-05-29 |
| 83 | 6G5H|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of a late human pre-40S ribosomal subunit - Mature | Electron microscopy | 3.6 | 2018-06-06 |
| 84 | 6ZOK|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | SARS-CoV-2-Nsp1-40S complex, focused on body | Electron microscopy | 2.8 | 2020-07-29 |
| 85 | 6OM7|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs | Electron microscopy | 3.7 | 2019-06-19 |
| 86 | 7WTV|1|2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A2 | Electron microscopy | 3.5 | 2022-10-19 |
| 87 | 6OLZ|1|B1 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA | Electron microscopy | 3.9 | 2019-06-19 |
| 88 | 5AJ0|1|B1 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Cryo electron microscopy of actively translating human polysomes (POST state). | Electron microscopy | 3.5 | 2015-05-20 |
| 89 | 6OLF|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs | Electron microscopy | 3.9 | 2019-06-19 |
| 90 | 5A2Q|1|2 | Small subunit ribosomal RNA | 18S RRNA | Homo sapiens | Eukarya | RF01960 | Structure of the HCV IRES bound to the human ribosome | Electron microscopy | 3.9 | 2015-07-15 |
| 91 | 6YBW|1|A | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Structure of a human 48S translational initiation complex - 40S body | Electron microscopy | 3.1 | 2020-09-16 |
| 92 | 6G4S|1|2 | Small subunit ribosomal RNA | pre-18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State B | Electron microscopy | 4 | 2018-06-06 |
| 93 | 5LKS|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Structure-function insights reveal the human ribosome as a cancer target for antibiotics | Electron microscopy | 3.6 | 2017-04-26 |
| 94 | 7MQ8|1|L1 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of the human SSU processome, state pre-A1 | Electron microscopy | 3.6 | 2021-09-22 |
| 95 | 7MQ9|1|L1 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of the human SSU processome, state pre-A1* | Electron microscopy | 3.87 | 2021-09-22 |
| 96 | 6ZOL|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | SARS-CoV-2-Nsp1-40S complex, focused on head | Electron microscopy | 2.8 | 2020-07-22 |
| 97 | 5T2C|1|AA | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | CryoEM structure of the human ribosome at 3.6 Angstrom resolution | Electron microscopy | 3.6 | 2017-01-25 |
| 98 | 5A8L|1|B | Small subunit ribosomal RNA | HUMAN 18S RIBOSOMAL RNA | Homo sapiens | Eukarya | RF01960 | Human eRF1 and the hCMV nascent peptide in the translation termination complex | Electron microscopy | 3.8 | 2015-12-02 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well.
| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5A8L|1|B | Human eRF1 and the hCMV nascent peptide in the translation termination complex | ELECTRON MICROSCOPY | 3.8 | 67 |
| 2 | 6OM0|1|S2 | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs | ELECTRON MICROSCOPY | 3.1 | 1680 |
| 3 | 6OM7|1|S2 | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs | ELECTRON MICROSCOPY | 3.7 | 1680 |
| 4 | 6G18|1|2 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State C | ELECTRON MICROSCOPY | 3.6 | 1658 |
| 5 | 6ZXE|1|2 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State F2 | ELECTRON MICROSCOPY | 3 | 1645 |
| 6 | 6G5I|1|2 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State R | ELECTRON MICROSCOPY | 3.5 | 1657 |
| 7 | 6ZUO|1|2 | Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage) | ELECTRON MICROSCOPY | 3.1 | 1665 |
| 8 | 6ZXD|1|2 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1 | ELECTRON MICROSCOPY | 3.2 | 1645 |
| 9 | 6ZOL|1|2 | SARS-CoV-2-Nsp1-40S complex, focused on head | ELECTRON MICROSCOPY | 2.8 | 472 |
| 10 | 7K5I|1|2 | SARS-COV-2 nsp1 in complex with human 40S ribosome | ELECTRON MICROSCOPY | 2.9 | 1665 |
| 11 | 6ZLW|1|2 | SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunit | ELECTRON MICROSCOPY | 2.6 | 1665 |
| 12 | 8PPK|1|2 | Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit | ELECTRON MICROSCOPY | 2.98 | 1685 |
| 13 | 8PPL|1|A2 | MERS-CoV Nsp1 bound to the human 43S pre-initiation complex | ELECTRON MICROSCOPY | 2.65 | 1694 |
| 14 | 6ZP4|1|2 | SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2 | ELECTRON MICROSCOPY | 2.9 | 1721 |
| 15 | 7A09|1|2 | Structure of a human ABCE1-bound 43S pre-initiation complex - State III | ELECTRON MICROSCOPY | 3.5 | 1721 |
| 16 | 6ZMT|1|2 | SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex | ELECTRON MICROSCOPY | 3 | 1569 |
| 17 | 6ZV6|1|2 | Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage) | ELECTRON MICROSCOPY | 2.9 | 1681 |
| 18 | 6ZXF|1|2 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State G | ELECTRON MICROSCOPY | 3.7 | 1656 |
| 19 | 6ZXH|1|2 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2 | ELECTRON MICROSCOPY | 2.7 | 1577 |
| 20 | 6ZXG|1|2 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1 | ELECTRON MICROSCOPY | 2.6 | 1577 |
| 21 | 6OLF|1|S2 | Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs | ELECTRON MICROSCOPY | 3.9 | 1680 |
| 22 | 6OLE|1|S2 | Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs | ELECTRON MICROSCOPY | 3.1 | 1680 |
| 23 | 6OLI|1|S2 | Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC) | ELECTRON MICROSCOPY | 3.5 | 1680 |
| 24 | 6Y57|1|S2 | Structure of human ribosome in hybrid-PRE state | ELECTRON MICROSCOPY | 3.5 | 1658 |
| 25 | 7QVP|1|S3 | Human collided disome (di-ribosome) stalled on XBP1 mRNA | ELECTRON MICROSCOPY | 3 | 1705 |
| 26 | 8JDM|1|w | Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state) | ELECTRON MICROSCOPY | 2.67 | 1554 |
| 27 | 8JDL|1|w | Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state) | ELECTRON MICROSCOPY | 2.42 | 1554 |
| 28 | 8JDJ|1|w | Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU) | ELECTRON MICROSCOPY | 2.5 | 1554 |
| 29 | 8JDK|1|w | Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU) | ELECTRON MICROSCOPY | 2.26 | 1554 |
| 30 | 6Y0G|1|S2 | Structure of human ribosome in classical-PRE state | ELECTRON MICROSCOPY | 3.2 | 1697 |
| 31 | 8G61|1|S2 | mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state) | ELECTRON MICROSCOPY | 2.94 | 1598 |
| 32 | 8G5Z|1|S2 | mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state) | ELECTRON MICROSCOPY | 2.64 | 1616 |
| 33 | 8G6J|1|S2 | mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2) | ELECTRON MICROSCOPY | 2.8 | 1616 |
| 34 | 8GLP|1|S2 | mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure) | ELECTRON MICROSCOPY | 1.67 | 1587 |
| 35 | 8G5Y|1|S2 | mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state) | ELECTRON MICROSCOPY | 2.29 | 1595 |
| 36 | 8G60|1|S2 | mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state) | ELECTRON MICROSCOPY | 2.54 | 1569 |
| 37 | 8QOI|1|S2 | Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA | ELECTRON MICROSCOPY | 1.9 | 1648 |
| 38 | 7QP7|1|A | Structure of the human 48S initiation complex in closed state (h48S AUG closed) | ELECTRON MICROSCOPY | 3.7 | 1693 |
| 39 | 6XA1|1|S2 | Structure of a drug-like compound stalled human translation termination complex | ELECTRON MICROSCOPY | 2.8 | 1512 |
| 40 | 6ZVH|1|2 | EDF1-ribosome complex | ELECTRON MICROSCOPY | 2.9 | 1740 |
| 41 | 6QZP|1|S2 | High-resolution cryo-EM structure of the human 80S ribosome | ELECTRON MICROSCOPY | 2.9 | 1707 |
| 42 | 7XNX|1|S2 | High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells | ELECTRON MICROSCOPY | 2.7 | 1686 |
| 43 | 7XNY|1|S2 | High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells | ELECTRON MICROSCOPY | 2.5 | 1687 |
| 44 | 6Z6N|1|S2 | Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1) | ELECTRON MICROSCOPY | 2.9 | 1740 |
| 45 | 6Z6L|1|S2 | Cryo-EM structure of human CCDC124 bound to 80S ribosomes | ELECTRON MICROSCOPY | 3 | 1740 |
| 46 | 6ZMO|1|S2 | SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex | ELECTRON MICROSCOPY | 3.1 | 1740 |
| 47 | 6ZMI|1|S2 | SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex | ELECTRON MICROSCOPY | 2.6 | 1740 |
| 48 | 6ZM7|1|S2 | SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex | ELECTRON MICROSCOPY | 2.7 | 1740 |
| 49 | 6ZME|1|S2 | SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex | ELECTRON MICROSCOPY | 3 | 1740 |
| 50 | 7QVP|1|S2 | Human collided disome (di-ribosome) stalled on XBP1 mRNA | ELECTRON MICROSCOPY | 3 | 1714 |
| 51 | 6Y2L|1|S2 | Structure of human ribosome in POST state | ELECTRON MICROSCOPY | 3 | 1713 |
| 52 | 5AJ0|1|B1 | Cryo electron microscopy of actively translating human polysomes (POST state). | ELECTRON MICROSCOPY | 3.5 | 1708 |
| 53 | 6OLG|1|B1 | Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA) | ELECTRON MICROSCOPY | 3.4 | 1708 |
| 54 | 6OLZ|1|B1 | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA | ELECTRON MICROSCOPY | 3.9 | 1708 |
| 55 | 6IP5|1|2m | Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii) | ELECTRON MICROSCOPY | 3.9 | 1742 |
| 56 | 8IFE|1|2m | Arbekacin-added human 80S ribosome | ELECTRON MICROSCOPY | 2.57 | 1742 |
| 57 | 8IFD|1|2m | Dibekacin-added human 80S ribosome | ELECTRON MICROSCOPY | 2.59 | 1742 |
| 58 | 6IP8|1|2m | Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv) | ELECTRON MICROSCOPY | 3.9 | 1742 |
| 59 | 5LKS|1|S2 | Structure-function insights reveal the human ribosome as a cancer target for antibiotics | ELECTRON MICROSCOPY | 3.6 | 1742 |
| 60 | 4UG0|1|S2 | STRUCTURE OF THE HUMAN 80S RIBOSOME | ELECTRON MICROSCOPY | 3.6 | 1742 |
| 61 | 5T2C|1|AA | CryoEM structure of the human ribosome at 3.6 Angstrom resolution | ELECTRON MICROSCOPY | 3.6 | 1742 |
| 62 | 8OZ0|1|W | Structure of a human 48S translation initiation complex with eIF4F and eIF4A | ELECTRON MICROSCOPY | 3.5 | 1687 |
| 63 | 7TQL|1|2 | CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B. | ELECTRON MICROSCOPY | 3.4 | 1656 |
| 64 | 6ZN5|1|2 | SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2 | ELECTRON MICROSCOPY | 3.2 | 1671 |
| 65 | 6ZOK|1|2 | SARS-CoV-2-Nsp1-40S complex, focused on body | ELECTRON MICROSCOPY | 2.8 | 1232 |
| 66 | 6ZOJ|1|2 | SARS-CoV-2-Nsp1-40S complex, composite map | ELECTRON MICROSCOPY | 2.8 | 1704 |
| 67 | 8T4S|1|2 | MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit | ELECTRON MICROSCOPY | 2.6 | 1671 |
| 68 | 6ZON|1|2 | SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1 | ELECTRON MICROSCOPY | 3 | 1721 |
| 69 | 6ZVJ|1|2 | Structure of a human ABCE1-bound 43S pre-initiation complex - State II | ELECTRON MICROSCOPY | 3.8 | 1720 |
| 70 | 5A2Q|1|2 | Structure of the HCV IRES bound to the human ribosome | ELECTRON MICROSCOPY | 3.9 | 1665 |
| 71 | 8Y0X|1|S2 | Dormant ribosome with SERBP1 | ELECTRON MICROSCOPY | 3.3 | 1739 |
| 72 | 8Y0W|1|S2 | dormant ribosome with eIF5A, eEF2 and SERBP1 | ELECTRON MICROSCOPY | 3.4 | 1735 |
| 73 | 6Z6M|1|S2 | Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1 | ELECTRON MICROSCOPY | 3.1 | 1740 |
| 74 | 8XXN|1|S2 | Cryo-EM structure of the human 43S ribosome with PDCD4 | ELECTRON MICROSCOPY | 3.6 | 1723 |
| 75 | 8XXM|1|S2 | Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G | ELECTRON MICROSCOPY | 3.2 | 1723 |
| 76 | 8XXL|1|S2 | Cryo-EM structure of the human 40S ribosome with PDCD4 | ELECTRON MICROSCOPY | 2.9 | 1723 |
| 77 | 7R4X|1|2 | Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map | ELECTRON MICROSCOPY | 2.15 | 1580 |
| 78 | 6G5H|1|2 | Cryo-EM structure of a late human pre-40S ribosomal subunit - Mature | ELECTRON MICROSCOPY | 3.6 | 1665 |
| 79 | 6ZMW|1|A | Structure of a human 48S translational initiation complex | ELECTRON MICROSCOPY | 3.7 | 1691 |
| 80 | 6YBW|1|A | Structure of a human 48S translational initiation complex - 40S body | ELECTRON MICROSCOPY | 3.1 | 1196 |
| 81 | 7WTX|1|2 | Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B1 | ELECTRON MICROSCOPY | 3.1 | 1605 |
| 82 | 7WTZ|1|2 | Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B2 | ELECTRON MICROSCOPY | 3 | 1624 |
| 83 | 7WU0|1|2 | Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B3 | ELECTRON MICROSCOPY | 3.3 | 1624 |
| 84 | 7WTW|1|2 | Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A3 | ELECTRON MICROSCOPY | 3.2 | 1585 |
| 85 | 7WTU|1|2 | Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1) | ELECTRON MICROSCOPY | 3 | 1574 |
| 86 | 7WTT|1|2 | Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (with CK1) | ELECTRON MICROSCOPY | 3.1 | 1574 |
| 87 | 7WTV|1|2 | Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A2 | ELECTRON MICROSCOPY | 3.5 | 1573 |
| 88 | 7WTS|1|2 | Cryo-EM structure of a human pre-40S ribosomal subunit - State UTP14 | ELECTRON MICROSCOPY | 3.2 | 1481 |
| 89 | 7MQA|1|L1 | Cryo-EM structure of the human SSU processome, state post-A1 | ELECTRON MICROSCOPY | 2.7 | 1570 |
| 90 | 7MQ9|1|L1 | Cryo-EM structure of the human SSU processome, state pre-A1* | ELECTRON MICROSCOPY | 3.87 | 1301 |
| 91 | 7MQ8|1|L1 | Cryo-EM structure of the human SSU processome, state pre-A1 | ELECTRON MICROSCOPY | 3.6 | 1301 |
| 92 | 8XSZ|1|S2 | Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA | ELECTRON MICROSCOPY | 3.2 | 1740 |
| 93 | 8YOP|1|S2 | Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline | ELECTRON MICROSCOPY | 2.2 | 1740 |
| 94 | 8K2C|1|S2 | Cryo-EM structure of the human 80S ribosome with Tigecycline | ELECTRON MICROSCOPY | 2.4 | 1740 |
| 95 | 8YOO|1|S2 | Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline | ELECTRON MICROSCOPY | 2 | 1719 |
| 96 | 8XSX|1|S2 | Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2 | ELECTRON MICROSCOPY | 2.4 | 1740 |
| 97 | 6G4S|1|2 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State B | ELECTRON MICROSCOPY | 4 | 1613 |
| 98 | 8XSY|1|S2 | Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled) | ELECTRON MICROSCOPY | 3 | 1740 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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