BGSU RNA Site //

Equivalence class NR_4.0_46995.8 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
16QZP|1|S2 (rep)Small subunit ribosomal RNA18S rRNA (1740-MER)Homo sapiensEukaryaRF01960High-resolution cryo-EM structure of the human 80S ribosomeElectron microscopy2.92019-04-24
26EK0|1|S218S ribosomal RNAHomo sapiensEukaryaHigh-resolution cryo-EM structure of the human 80S ribosomeElectron microscopy2.92018-01-24
36OM0|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAsElectron microscopy3.12019-06-19
46OLE|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAsElectron microscopy3.12019-06-19
56OLG|1|B1Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)Electron microscopy3.42019-06-19
66OLI|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)Electron microscopy3.52019-06-19
76G18|1|2Small subunit ribosomal RNApre-18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State CElectron microscopy3.62018-06-06
86G5I|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State RElectron microscopy3.52018-06-06
94UG0|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960STRUCTURE OF THE HUMAN 80S RIBOSOMEElectron microscopy3.62015-06-10
106IP8|1|2mSmall subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)Electron microscopy3.92019-05-29
116IP5|1|2mSmall subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)Electron microscopy3.92019-05-29
126G5H|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - MatureElectron microscopy3.62018-06-06
136OM7|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAsElectron microscopy3.72019-06-19
146OLZ|1|B1Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNAElectron microscopy3.92019-06-19
155AJ0|1|B1Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo electron microscopy of actively translating human polysomes (POST state).Electron microscopy3.52015-05-20
166OLF|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAsElectron microscopy3.92019-06-19
175A2Q|1|2Small subunit ribosomal RNA18S RRNAHomo sapiensEukaryaRF01960Structure of the HCV IRES bound to the human ribosomeElectron microscopy3.92015-07-15
186G4S|1|2Small subunit ribosomal RNApre-18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State BElectron microscopy42018-06-06
195LKS|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure-function insights reveal the human ribosome as a cancer target for antibioticsElectron microscopy3.62017-04-26
205T2C|1|AASmall subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960CryoEM structure of the human ribosome at 3.6 Angstrom resolutionElectron microscopy3.62017-01-25
215A8L|1|BSmall subunit ribosomal RNAHUMAN 18S RIBOSOMAL RNAHomo sapiensEukaryaRF01960Human eRF1 and the hCMV nascent peptide in the translation termination complexElectron microscopy3.82015-12-02

Release history

Release3.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.953.963.973.983.993.1003.1013.1023.1033.1043.1053.1063.1073.1083.1093.1103.1113.1123.1133.1143.1153.1163.1173.1183.1193.1203.121
Date2019-06-212019-06-282019-07-052019-07-122019-07-192019-07-262019-08-022019-08-092019-08-162019-08-232019-08-282019-09-042019-09-112019-09-192019-09-252019-10-032019-10-092019-10-162019-10-232019-10-302019-11-062019-11-132019-11-202019-11-272019-12-042019-12-112019-12-182019-12-252020-01-012020-01-082020-01-152020-01-222020-01-292020-02-052020-02-122020-02-192020-02-262020-03-042020-03-112020-03-182020-03-252020-04-012020-04-08

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_46995.8NR_4.0_46995.73.79(14) 5A8L|1|B, 6G18|1|2, 6IP8|1|2m, 6IP5|1|2m, 6EK0|1|S2, 5A2Q|1|2, 6G5I|1|2, 5T2C|1|AA, 4UG0|1|S2, 6G5H|1|2, 5LKS|1|S2, 6QZP|1|S2, 6G4S|1|2, 5AJ0|1|B1(7) 6OM7|1|S2, 6OLI|1|S2, 6OLE|1|S2, 6OM0|1|S2, 6OLG|1|B1, 6OLZ|1|B1, 6OLF|1|S2(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_46995.8NR_4.0_46995.93.122(21) 6OM0|1|S2, 5A8L|1|B, 6G4S|1|2, 6OLE|1|S2, 6G18|1|2, 6IP8|1|2m, 6OLZ|1|B1, 5A2Q|1|2, 6EK0|1|S2, 6IP5|1|2m, 6OLI|1|S2, 4UG0|1|S2, 5T2C|1|AA, 6G5I|1|2, 6OLG|1|B1, 6QZP|1|S2, 5LKS|1|S2, 6G5H|1|2, 6OLF|1|S2, 6OM7|1|S2, 5AJ0|1|B1(0) (3) 6Y57|1|S2, 6Y0G|1|S2, 6Y2L|1|S2

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15A8L|1|BHuman eRF1 and the hCMV nascent peptide in the translation termination complexELECTRON MICROSCOPY3.867
26IP8|1|2mCryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)ELECTRON MICROSCOPY3.91742
36IP5|1|2mCryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)ELECTRON MICROSCOPY3.91742
45LKS|1|S2Structure-function insights reveal the human ribosome as a cancer target for antibioticsELECTRON MICROSCOPY3.61742
54UG0|1|S2STRUCTURE OF THE HUMAN 80S RIBOSOMEELECTRON MICROSCOPY3.61742
65T2C|1|AACryoEM structure of the human ribosome at 3.6 Angstrom resolutionELECTRON MICROSCOPY3.61742
76OLZ|1|B1Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNAELECTRON MICROSCOPY3.91708
86OLG|1|B1Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)ELECTRON MICROSCOPY3.41708
95AJ0|1|B1Cryo electron microscopy of actively translating human polysomes (POST state).ELECTRON MICROSCOPY3.51708
106EK0|1|S2High-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.91706
116QZP|1|S2High-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.91707
126OLE|1|S2Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAsELECTRON MICROSCOPY3.11680
136OLI|1|S2Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)ELECTRON MICROSCOPY3.51680
146OLF|1|S2Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAsELECTRON MICROSCOPY3.91680
156G5H|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - MatureELECTRON MICROSCOPY3.61665
165A2Q|1|2Structure of the HCV IRES bound to the human ribosomeELECTRON MICROSCOPY3.91665
176G5I|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State RELECTRON MICROSCOPY3.51657
186G18|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State CELECTRON MICROSCOPY3.61658
196OM7|1|S2Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAsELECTRON MICROSCOPY3.71680
206OM0|1|S2Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAsELECTRON MICROSCOPY3.11680
216G4S|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State BELECTRON MICROSCOPY41613