Equivalence class NR_4.0_50848.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5ZEJ|1|A+ 5ZEJ|1|B (rep) | RNA (5'-R(P*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') | synthetic construct | Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with paromomycin | X-ray diffraction | 3.5 | 2018-03-21 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_50848.1 | NR_4.0_19598.3 | 3.59 | (1) 5ZEJ|1|A+5ZEJ|1|B | (0) | (7) 5XZ1|1|A+5XZ1|1|B, 5XZ1|1|C+5XZ1|1|D, 5Z1H|1|B+5Z1H|1|A, 5Z1I|1|A, 5ZEG|1|A+5ZEG|1|B+5ZEG|1|C, 5ZEI|1|A+5ZEI|1|B, 5ZEM|1|A+5ZEM|1|B |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_50848.1 | NR_4.0_71199.1 | 3.75 | (1) 5ZEJ|1|A+5ZEJ|1|B | (0) | (43) 1J7T|1|A+1J7T|1|B, 1LC4|1|A+1LC4|1|B, 1MWL|1|A+1MWL|1|B, 1YRJ|1|A+1YRJ|1|B, 2BE0|1|A+2BE0|1|B, 2BEE|1|A+2BEE|1|B, 2ESI|1|A+2ESI|1|B, 2ESJ|1|A+2ESJ|1|B, 2ET3|1|A+2ET3|1|B, 2ET4|1|A+2ET4|1|B, 2ET5|1|A+2ET5|1|B, 2F4T|1|B+2F4T|1|A, 2G5Q|1|A+2G5Q|1|B, 2PWT|1|A+2PWT|1|B, 3BNL|1|A+3BNL|1|B, 3S4P|1|A+3S4P|1|B, 3TD1|1|B+3TD1|1|A, 3WRU|1|A+3WRU|1|B, 4F8U|1|A+4F8U|1|B, 4F8V|1|A+4F8V|1|B, 4GPW|1|A+4GPW|1|B, 4GPX|1|A+4GPX|1|B, 4GPY|1|A+4GPY|1|B, 4K32|1|A+4K32|1|B, 4P20|1|A+4P20|1|B, 4P3S|1|B+4P3S|1|A, 4PDQ|1|A+4PDQ|1|B, 4WCP|1|A+4WCP|1|B+4WCP|1|C, 4WCQ|1|A+4WCQ|1|B, 4WCR|1|A+4WCR|1|B, 4WCS|1|A+4WCS|1|B, 5BWS|1|A+5BWS|1|B, 5BWS|1|C+5BWS|1|D, 5BXK|1|A+5BXK|1|B, 5BXK|1|C+5BXK|1|D, 5XZ1|1|A+5XZ1|1|B, 5XZ1|1|C+5XZ1|1|D, 5Z1H|1|B+5Z1H|1|A, 5Z1I|1|A, 5Z71|1|B+5Z71|1|A, 5ZEG|1|A+5ZEG|1|B+5ZEG|1|C, 5ZEI|1|A+5ZEI|1|B, 5ZEM|1|A+5ZEM|1|B |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5ZEJ|1|A+5ZEJ|1|B | Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with paromomycin | X-RAY DIFFRACTION | 3.5 | 21 |