Equivalence class NR_4.0_52752.5 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6ZM7|1|L7 (rep) | 5S ribosomal RNA | 5S ribosomal RNA | Homo sapiens | Eukarya | RF00001 | SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex | Electron microscopy | 2.7 | 2020-07-29 |
| 2 | 6Y6X|1|L7 | 5S ribosomal RNA | 5S ribosomal RNA | Homo sapiens | Eukarya | RF00001 | Tetracenomycin X bound to the human ribosome | Electron microscopy | 2.8 | 2020-07-08 |
| 3 | 6Z6N|1|L7 | 5S ribosomal RNA | 5S rRNA | Homo sapiens | Eukarya | RF00001 | Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1) | Electron microscopy | 2.9 | 2020-07-29 |
| 4 | 6QZP|1|L7 | 5S ribosomal RNA | 5S rRNA (120-MER) | Homo sapiens | Eukarya | RF00001 | High-resolution cryo-EM structure of the human 80S ribosome | Electron microscopy | 2.9 | 2019-04-24 |
| 5 | 6EK0|1|L7 | 5S ribosomal RNA | Homo sapiens | Eukarya | High-resolution cryo-EM structure of the human 80S ribosome | Electron microscopy | 2.9 | 2018-01-24 | ||
| 6 | 6Z6L|1|L7 | 5S ribosomal RNA | 5S rRNA | Homo sapiens | Eukarya | RF00001 | Cryo-EM structure of human CCDC124 bound to 80S ribosomes | Electron microscopy | 3 | 2020-07-29 |
| 7 | 6ZME|1|L7 | 5S ribosomal RNA | 5S ribosomal RNA | Homo sapiens | Eukarya | RF00001 | SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex | Electron microscopy | 3 | 2020-08-12 |
| 8 | 6Z6M|1|L7 | 5S ribosomal RNA | 5S rRNA | Homo sapiens | Eukarya | RF00001 | Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1 | Electron microscopy | 3.1 | 2020-07-29 |
| 9 | 6OLE|1|E | 5S ribosomal RNA | 5S ribosomal RNA | Homo sapiens | Eukarya | RF00001 | Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs | Electron microscopy | 3.1 | 2019-06-19 |
| 10 | 6Y2L|1|L7 | 5S ribosomal RNA | 5S ribosomal RNA | Homo sapiens | Eukarya | RF00001 | Structure of human ribosome in POST state | Electron microscopy | 3 | 2020-04-15 |
| 11 | 6OM0|1|E | 5S ribosomal RNA | 5S ribosomal RNA | Homo sapiens | Eukarya | RF00001 | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs | Electron microscopy | 3.1 | 2019-06-19 |
| 12 | 6Y0G|1|L7 | 5S ribosomal RNA | 5S rRNA | Homo sapiens | Eukarya | RF00001 | Structure of human ribosome in classical-PRE state | Electron microscopy | 3.2 | 2020-04-15 |
| 13 | 6OLG|1|A4 | 5S ribosomal RNA | 5S ribosomal RNA | Homo sapiens | Eukarya | RF00001 | Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA) | Electron microscopy | 3.4 | 2019-06-19 |
| 14 | 6OLI|1|E | 5S ribosomal RNA | 5S ribosomal RNA | Homo sapiens | Eukarya | RF00001 | Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC) | Electron microscopy | 3.5 | 2019-06-19 |
| 15 | 6Y57|1|L7 | 5S ribosomal RNA | 5S ribosomal RNA | Homo sapiens | Eukarya | RF00001 | Structure of human ribosome in hybrid-PRE state | Electron microscopy | 3.5 | 2020-04-15 |
| 16 | 5T2C|1|B | 5S ribosomal RNA | 5S rRNA | Homo sapiens | Eukarya | RF00001 | CryoEM structure of the human ribosome at 3.6 Angstrom resolution | Electron microscopy | 3.6 | 2017-01-25 |
| 17 | 4UG0|1|L7 | 5S ribosomal RNA | 5S ribosomal RNA | Homo sapiens | Eukarya | RF00001 | STRUCTURE OF THE HUMAN 80S RIBOSOME | Electron microscopy | 3.6 | 2015-06-10 |
| 18 | 6OM7|1|E | 5S ribosomal RNA | 5S ribosomal RNA | Homo sapiens | Eukarya | RF00001 | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs | Electron microscopy | 3.7 | 2019-06-19 |
| 19 | 6OLF|1|E | 5S ribosomal RNA | 5S ribosomal RNA | Homo sapiens | Eukarya | RF00001 | Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs | Electron microscopy | 3.9 | 2019-06-19 |
| 20 | 6IP5|1|1B | 5S ribosomal RNA | 5S ribosomal RNA | Homo sapiens | Eukarya | RF00001 | Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii) | Electron microscopy | 3.9 | 2019-05-29 |
| 21 | 6OLZ|1|A4 | 5S ribosomal RNA | 5S ribosomal RNA | Homo sapiens | Eukarya | RF00001 | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA | Electron microscopy | 3.9 | 2019-06-19 |
| 22 | 6IP8|1|1B | 5S ribosomal RNA | 5S ribosomal RNA | Homo sapiens | Eukarya | RF00001 | Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv) | Electron microscopy | 3.9 | 2019-05-29 |
| 23 | 5LKS|1|L7 | 5S ribosomal RNA | 5S ribosomal RNA | Homo sapiens | Eukarya | RF00001 | Structure-function insights reveal the human ribosome as a cancer target for antibiotics | Electron microscopy | 3.6 | 2017-04-26 |
| 24 | 5AJ0|1|A4 | 5S ribosomal RNA | 5S ribosomal RNA | Homo sapiens | Eukarya | RF00001 | Cryo electron microscopy of actively translating human polysomes (POST state). | Electron microscopy | 3.5 | 2015-05-20 |
Release history
| Release | 3.139 |
|---|---|
| Date | 2020-08-12 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_52752.5 | NR_4.0_52752.4 | 3.139 | (23) 6OM0|1|E, 6OLZ|1|A4, 6OLI|1|E, 6OLG|1|A4, 6OLF|1|E, 6OLE|1|E, 6IP8|1|1B, 6IP5|1|1B, 6EK0|1|L7, 5T2C|1|B, 5LKS|1|L7, 5AJ0|1|A4, 4UG0|1|L7, 6ZM7|1|L7, 6Z6N|1|L7, 6Z6M|1|L7, 6Z6L|1|L7, 6Y6X|1|L7, 6Y57|1|L7, 6Y2L|1|L7, 6Y0G|1|L7, 6QZP|1|L7, 6OM7|1|E | (1) 6ZME|1|L7 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_52752.5 | NR_4.0_52752.6 | 3.140 | (24) 6EK0|1|L7, 6OM0|1|E, 6Z6M|1|L7, 5T2C|1|B, 6OLZ|1|A4, 6Z6L|1|L7, 6OLI|1|E, 6Y6X|1|L7, 5LKS|1|L7, 6OLG|1|A4, 6Y57|1|L7, 5AJ0|1|A4, 6OLF|1|E, 6Y2L|1|L7, 4UG0|1|L7, 6OLE|1|E, 6Y0G|1|L7, 6ZME|1|L7, 6IP8|1|1B, 6QZP|1|L7, 6ZM7|1|L7, 6IP5|1|1B, 6OM7|1|E, 6Z6N|1|L7 | (0) | (2) 6ZMI|1|L7, 6ZMO|1|L7 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5AJ0|1|A4 | Cryo electron microscopy of actively translating human polysomes (POST state). | ELECTRON MICROSCOPY | 3.5 | 119 |
| 2 | 6OLG|1|A4 | Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA) | ELECTRON MICROSCOPY | 3.4 | 119 |
| 3 | 6OLZ|1|A4 | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA | ELECTRON MICROSCOPY | 3.9 | 119 |
| 4 | 6OLF|1|E | Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs | ELECTRON MICROSCOPY | 3.9 | 119 |
| 5 | 6OM7|1|E | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs | ELECTRON MICROSCOPY | 3.7 | 119 |
| 6 | 6OLI|1|E | Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC) | ELECTRON MICROSCOPY | 3.5 | 119 |
| 7 | 6OLE|1|E | Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs | ELECTRON MICROSCOPY | 3.1 | 119 |
| 8 | 6OM0|1|E | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs | ELECTRON MICROSCOPY | 3.1 | 119 |
| 9 | 6ZME|1|L7 | SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex | ELECTRON MICROSCOPY | 3 | 120 |
| 10 | 6ZM7|1|L7 | SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex | ELECTRON MICROSCOPY | 2.7 | 120 |
| 11 | 6Z6L|1|L7 | Cryo-EM structure of human CCDC124 bound to 80S ribosomes | ELECTRON MICROSCOPY | 3 | 120 |
| 12 | 6Z6N|1|L7 | Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1) | ELECTRON MICROSCOPY | 2.9 | 120 |
| 13 | 6Z6M|1|L7 | Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1 | ELECTRON MICROSCOPY | 3.1 | 120 |
| 14 | 6Y6X|1|L7 | Tetracenomycin X bound to the human ribosome | ELECTRON MICROSCOPY | 2.8 | 120 |
| 15 | 6QZP|1|L7 | High-resolution cryo-EM structure of the human 80S ribosome | ELECTRON MICROSCOPY | 2.9 | 120 |
| 16 | 6EK0|1|L7 | High-resolution cryo-EM structure of the human 80S ribosome | ELECTRON MICROSCOPY | 2.9 | 120 |
| 17 | 6Y0G|1|L7 | Structure of human ribosome in classical-PRE state | ELECTRON MICROSCOPY | 3.2 | 120 |
| 18 | 6Y2L|1|L7 | Structure of human ribosome in POST state | ELECTRON MICROSCOPY | 3 | 120 |
| 19 | 6Y57|1|L7 | Structure of human ribosome in hybrid-PRE state | ELECTRON MICROSCOPY | 3.5 | 120 |
| 20 | 4UG0|1|L7 | STRUCTURE OF THE HUMAN 80S RIBOSOME | ELECTRON MICROSCOPY | 3.6 | 120 |
| 21 | 5T2C|1|B | CryoEM structure of the human ribosome at 3.6 Angstrom resolution | ELECTRON MICROSCOPY | 3.6 | 120 |
| 22 | 6IP5|1|1B | Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii) | ELECTRON MICROSCOPY | 3.9 | 120 |
| 23 | 6IP8|1|1B | Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv) | ELECTRON MICROSCOPY | 3.9 | 120 |
| 24 | 5LKS|1|L7 | Structure-function insights reveal the human ribosome as a cancer target for antibiotics | ELECTRON MICROSCOPY | 3.6 | 120 |