BGSU RNA Site //

Equivalence class NR_4.0_55511.1 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
11N7A|1|H (rep)RNA/DNA (5'-R(*U)-D(P*(BGM))-R(P*AP*GP*GP*U)-3')RIP-Radiation-damage Induced PhasingX-RAY DIFFRACTION1.22003-03-04
21N7B|1|ARNA/DNA (5'-R(*U)-D(P*(BGM))-R(P*AP*GP*GP*U)-3')RIP-Radiation-damage Induced PhasingX-RAY DIFFRACTION1.42003-03-04
31MDG|1|A5'-R(*UP*(BGM)GP*AP*GP*GP*U)-3'An Alternating Antiparallel Octaplex in an RNA Crystal StructureX-RAY DIFFRACTION1.52003-08-12
41N7A|1|ARNA/DNA (5'-R(*U)-D(P*(BGM))-R(P*AP*GP*GP*U)-3')RIP-Radiation-damage Induced PhasingX-RAY DIFFRACTION1.22003-03-04
51N7B|1|BRNA/DNA (5'-R(*U)-D(P*(BGM))-R(P*AP*GP*GP*U)-3')RIP-Radiation-damage Induced PhasingX-RAY DIFFRACTION1.42003-03-04
61N7A|1|BRNA/DNA (5'-R(*U)-D(P*(BGM))-R(P*AP*GP*GP*U)-3')RIP-Radiation-damage Induced PhasingX-RAY DIFFRACTION1.22003-03-04
71N7B|1|CRNA/DNA (5'-R(*U)-D(P*(BGM))-R(P*AP*GP*GP*U)-3')RIP-Radiation-damage Induced PhasingX-RAY DIFFRACTION1.42003-03-04
81N7A|1|CRNA/DNA (5'-R(*U)-D(P*(BGM))-R(P*AP*GP*GP*U)-3')RIP-Radiation-damage Induced PhasingX-RAY DIFFRACTION1.22003-03-04
91N7B|1|DRNA/DNA (5'-R(*U)-D(P*(BGM))-R(P*AP*GP*GP*U)-3')RIP-Radiation-damage Induced PhasingX-RAY DIFFRACTION1.42003-03-04
101N7A|1|DRNA/DNA (5'-R(*U)-D(P*(BGM))-R(P*AP*GP*GP*U)-3')RIP-Radiation-damage Induced PhasingX-RAY DIFFRACTION1.22003-03-04
111N7B|1|ERNA/DNA (5'-R(*U)-D(P*(BGM))-R(P*AP*GP*GP*U)-3')RIP-Radiation-damage Induced PhasingX-RAY DIFFRACTION1.42003-03-04
121N7A|1|ERNA/DNA (5'-R(*U)-D(P*(BGM))-R(P*AP*GP*GP*U)-3')RIP-Radiation-damage Induced PhasingX-RAY DIFFRACTION1.22003-03-04
131N7A|1|FRNA/DNA (5'-R(*U)-D(P*(BGM))-R(P*AP*GP*GP*U)-3')RIP-Radiation-damage Induced PhasingX-RAY DIFFRACTION1.22003-03-04
141N7B|1|FRNA/DNA (5'-R(*U)-D(P*(BGM))-R(P*AP*GP*GP*U)-3')RIP-Radiation-damage Induced PhasingX-RAY DIFFRACTION1.42003-03-04
151N7B|1|GRNA/DNA (5'-R(*U)-D(P*(BGM))-R(P*AP*GP*GP*U)-3')RIP-Radiation-damage Induced PhasingX-RAY DIFFRACTION1.42003-03-04
161N7A|1|GRNA/DNA (5'-R(*U)-D(P*(BGM))-R(P*AP*GP*GP*U)-3')RIP-Radiation-damage Induced PhasingX-RAY DIFFRACTION1.22003-03-04
171N7B|1|HRNA/DNA (5'-R(*U)-D(P*(BGM))-R(P*AP*GP*GP*U)-3')RIP-Radiation-damage Induced PhasingX-RAY DIFFRACTION1.42003-03-04

Release history

Release2.1242.1252.1262.1272.1282.1292.1302.131
Date2017-04-262017-04-292017-05-092017-05-152017-05-202017-05-272017-06-072017-06-11

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_55511.1NR_4.0_09982.12.124(1) 1MDG|1|A(16) 1N7A|1|A, 1N7A|1|B, 1N7A|1|C, 1N7A|1|D, 1N7A|1|E, 1N7A|1|F, 1N7A|1|G, 1N7A|1|H, 1N7B|1|A, 1N7B|1|B, 1N7B|1|C, 1N7B|1|D, 1N7B|1|E, 1N7B|1|F, 1N7B|1|G, 1N7B|1|H(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_55511.1NR_4.0_78371.12.132(1) 1MDG|1|A(16) 1N7A|1|A, 1N7A|1|B, 1N7A|1|C, 1N7A|1|D, 1N7A|1|E, 1N7A|1|F, 1N7A|1|G, 1N7A|1|H, 1N7B|1|A, 1N7B|1|B, 1N7B|1|C, 1N7B|1|D, 1N7B|1|E, 1N7B|1|F, 1N7B|1|G, 1N7B|1|H(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
11MDG|1|AAn Alternating Antiparallel Octaplex in an RNA Crystal StructureX-RAY DIFFRACTION1.55
21N7A|1|ARIP-Radiation-damage Induced PhasingX-RAY DIFFRACTION1.25
31N7B|1|ARIP-Radiation-damage Induced PhasingX-RAY DIFFRACTION1.45
41N7A|1|DRIP-Radiation-damage Induced PhasingX-RAY DIFFRACTION1.25
51N7B|1|DRIP-Radiation-damage Induced PhasingX-RAY DIFFRACTION1.45
61N7B|1|FRIP-Radiation-damage Induced PhasingX-RAY DIFFRACTION1.45
71N7A|1|FRIP-Radiation-damage Induced PhasingX-RAY DIFFRACTION1.25
81N7B|1|CRIP-Radiation-damage Induced PhasingX-RAY DIFFRACTION1.45
91N7A|1|CRIP-Radiation-damage Induced PhasingX-RAY DIFFRACTION1.25
101N7A|1|ERIP-Radiation-damage Induced PhasingX-RAY DIFFRACTION1.25
111N7B|1|ERIP-Radiation-damage Induced PhasingX-RAY DIFFRACTION1.45
121N7B|1|HRIP-Radiation-damage Induced PhasingX-RAY DIFFRACTION1.45
131N7A|1|HRIP-Radiation-damage Induced PhasingX-RAY DIFFRACTION1.25
141N7A|1|GRIP-Radiation-damage Induced PhasingX-RAY DIFFRACTION1.25
151N7B|1|GRIP-Radiation-damage Induced PhasingX-RAY DIFFRACTION1.45
161N7B|1|BRIP-Radiation-damage Induced PhasingX-RAY DIFFRACTION1.45
171N7A|1|BRIP-Radiation-damage Induced PhasingX-RAY DIFFRACTION1.25