Equivalence class NR_4.0_56118.5 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6ASO|1|I (rep) | U6 spliceosomal RNA | Saccharomyces cerevisiae strain HB_S_GIMBLETTROAD_9 chromosome XII sequence | Saccharomyces cerevisiae | Eukarya | RF00026 | Structure of yeast U6 snRNP with 3'-phosphate terminated U6 RNA | X-ray diffraction | 2.71 | 2018-05-09 |
| 2 | 5VSU|1|I | U6 spliceosomal RNA | Saccharomyces cerevisiae strain T8 chromosome XII sequence | Saccharomyces cerevisiae | Eukarya | RF00026 | Structure of yeast U6 snRNP with 2'-phosphate terminated U6 RNA | X-ray diffraction | 3.1 | 2018-05-09 |
| 3 | 5MPS|1|6 | U6 spliceosomal RNA | Saccharomyces cerevisiae strain T.52_2H chromosome XII sequence, U2 snRNA, Yeast UBC4 gene for ubiquitin-conjugating enzyme | Saccharomyces cerevisiae | Eukarya | RF00026 | Structure of a spliceosome remodeled for exon ligation | Electron microscopy | 3.85 | 2017-01-18 |
| 4 | 5YLZ|1|D | U6 spliceosomal RNA | U6 snRNA, mRNA/intron lariat, U2 snRNA | Saccharomyces cerevisiae | Eukarya | RF00026 | Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstrom | Electron microscopy | 3.6 | 2018-07-18 |
| 5 | 5GMK|1|E+ 5GMK|1|L | U6 spliceosomal RNA + U2 splicesomal small nuclear RNA | U6 snRNA, U2 snRNA, Intron_BPS, 5'-Splicing Site | Saccharomyces cerevisiae | Eukarya | RF00026 + RF00004 | Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution | Electron microscopy | 3.4 | 2016-08-17 |
| 6 | 5WSG|1|E | U6 spliceosomal RNA | Saccharomyces cerevisiae S288c SNR6 snRNA, RNA (91-MER), 3'-intron-lariat, 5'-intron-lariat | Saccharomyces cerevisiae | Eukarya | RF00026 | Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolution | Electron microscopy | 4 | 2017-01-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_56118.5 | NR_4.0_56118.4 | 3.31 | (5) 6ASO|1|I, 5WSG|1|E, 5VSU|1|I, 5MPS|1|6, 5GMK|1|E+5GMK|1|L | (1) 5YLZ|1|D | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_56118.5 | NR_4.0_56118.6 | 3.33 | (6) 6ASO|1|I, 5YLZ|1|D, 5WSG|1|E, 5VSU|1|I, 5MPS|1|6, 5GMK|1|E+5GMK|1|L | (0) | (1) 5Y88|1|D |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5YLZ|1|D | Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstrom | ELECTRON MICROSCOPY | 3.6 | 103 |
| 2 | 5WSG|1|E | Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolution | ELECTRON MICROSCOPY | 4 | 103 |
| 3 | 5GMK|1|E+5GMK|1|L | Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution | ELECTRON MICROSCOPY | 3.4 | 103 |
| 4 | 5MPS|1|6 | Structure of a spliceosome remodeled for exon ligation | ELECTRON MICROSCOPY | 3.85 | 99 |
| 5 | 6ASO|1|I | Structure of yeast U6 snRNP with 3'-phosphate terminated U6 RNA | X-RAY DIFFRACTION | 2.71 | 69 |
| 6 | 5VSU|1|I | Structure of yeast U6 snRNP with 2'-phosphate terminated U6 RNA | X-RAY DIFFRACTION | 3.1 | 72 |