Equivalence class NR_4.0_57046.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6YML|1|A+ 6YML|1|B (rep) | Chains: A,C, Chains: B,D | Roseobacter sp. | Crystal structure of the SAM-SAH riboswitch with decarboxylated SAH | X-ray diffraction | 2.17 | 2020-07-22 | |||
| 2 | 6YMK|1|A+ 6YMK|1|B | Chains: A,C,F,I,M,O, Chains: B,D,G,J,N,P | Roseobacter sp. | Crystal structure of the SAM-SAH riboswitch with AMP | X-ray diffraction | 2.03 | 2020-07-22 | |||
| 3 | 6YMM|1|A+ 6YMM|1|B | Chains: A, Chains: B,D | Roseobacter sp. | Crystal structure of the SAM-SAH riboswitch with SAM from space group P312 | X-ray diffraction | 2.2 | 2020-07-22 | |||
| 4 | 6YMJ|1|M+ 6YMJ|1|N | Chains: A,C,F,I,M,O, Chains: B,D,G,J,N,P | Roseobacter sp. | Crystal structure of the SAM-SAH riboswitch with adenosine | X-ray diffraction | 2.04 | 2020-07-22 | |||
| 5 | 6YMJ|1|F+ 6YMJ|1|G | Chains: A,C,F,I,M,O, Chains: B,D,G,J,N,P | Roseobacter sp. | Crystal structure of the SAM-SAH riboswitch with adenosine | X-ray diffraction | 2.04 | 2020-07-22 | |||
| 6 | 6YMK|1|M+ 6YMK|1|N | Chains: A,C,F,I,M,O, Chains: B,D,G,J,N,P | Roseobacter sp. | Crystal structure of the SAM-SAH riboswitch with AMP | X-ray diffraction | 2.03 | 2020-07-22 | |||
| 7 | 6YMJ|1|A+ 6YMJ|1|B | Chains: A,C,F,I,M,O, Chains: B,D,G,J,N,P | Roseobacter sp. | Crystal structure of the SAM-SAH riboswitch with adenosine | X-ray diffraction | 2.04 | 2020-07-22 | |||
| 8 | 6YMM|1|C+ 6YMM|1|D | Chains: A, Chains: B,D | Roseobacter sp. | Crystal structure of the SAM-SAH riboswitch with SAM from space group P312 | X-ray diffraction | 2.2 | 2020-07-22 | |||
| 9 | 6YMK|1|O+ 6YMK|1|P | Chains: A,C,F,I,M,O, Chains: B,D,G,J,N,P | Roseobacter sp. | Crystal structure of the SAM-SAH riboswitch with AMP | X-ray diffraction | 2.03 | 2020-07-22 | |||
| 10 | 6YMK|1|C+ 6YMK|1|D | Chains: A,C,F,I,M,O, Chains: B,D,G,J,N,P | Roseobacter sp. | Crystal structure of the SAM-SAH riboswitch with AMP | X-ray diffraction | 2.03 | 2020-07-22 | |||
| 11 | 6YMI|1|M+ 6YMI|1|N | Chains: A,C,F,I,M,O, Chains: B,D,G,J,N,P | Roseobacter sp. | Crystal structure of the SAM-SAH riboswitch with AMP | X-ray diffraction | 2.5 | 2020-07-22 | |||
| 12 | 6YMI|1|F+ 6YMI|1|G | Chains: A,C,F,I,M,O, Chains: B,D,G,J,N,P | Roseobacter sp. | Crystal structure of the SAM-SAH riboswitch with AMP | X-ray diffraction | 2.5 | 2020-07-22 | |||
| 13 | 6YMI|1|A+ 6YMI|1|B | Chains: A,C,F,I,M,O, Chains: B,D,G,J,N,P | Roseobacter sp. | Crystal structure of the SAM-SAH riboswitch with AMP | X-ray diffraction | 2.5 | 2020-07-22 | |||
| 14 | 6YMK|1|F+ 6YMK|1|G | Chains: A,C,F,I,M,O, Chains: B,D,G,J,N,P | Roseobacter sp. | Crystal structure of the SAM-SAH riboswitch with AMP | X-ray diffraction | 2.03 | 2020-07-22 | |||
| 15 | 6YMK|1|I+ 6YMK|1|J | Chains: A,C,F,I,M,O, Chains: B,D,G,J,N,P | Roseobacter sp. | Crystal structure of the SAM-SAH riboswitch with AMP | X-ray diffraction | 2.03 | 2020-07-22 | |||
| 16 | 6YLB|1|M+ 6YLB|1|N | Chains: A,C,F,I,M,O, Chains: B,D,G,J,N,P | Roseobacter sp. | Crystal structure of the SAM-SAH riboswitch with SAM | X-ray diffraction | 2.12 | 2020-07-22 | |||
| 17 | 6YLB|1|I+ 6YLB|1|J | Chains: A,C,F,I,M,O, Chains: B,D,G,J,N,P | Roseobacter sp. | Crystal structure of the SAM-SAH riboswitch with SAM | X-ray diffraction | 2.12 | 2020-07-22 | |||
| 18 | 6YML|1|C+ 6YML|1|D | Chains: A,C, Chains: B,D | Roseobacter sp. | Crystal structure of the SAM-SAH riboswitch with decarboxylated SAH | X-ray diffraction | 2.17 | 2020-07-22 | |||
| 19 | 6YLB|1|F+ 6YLB|1|G | Chains: A,C,F,I,M,O, Chains: B,D,G,J,N,P | Roseobacter sp. | Crystal structure of the SAM-SAH riboswitch with SAM | X-ray diffraction | 2.12 | 2020-07-22 | |||
| 20 | 6YMI|1|C+ 6YMI|1|D | Chains: A,C,F,I,M,O, Chains: B,D,G,J,N,P | Roseobacter sp. | Crystal structure of the SAM-SAH riboswitch with AMP | X-ray diffraction | 2.5 | 2020-07-22 | |||
| 21 | 6YLB|1|O+ 6YLB|1|P | Chains: A,C,F,I,M,O, Chains: B,D,G,J,N,P | Roseobacter sp. | Crystal structure of the SAM-SAH riboswitch with SAM | X-ray diffraction | 2.12 | 2020-07-22 | |||
| 22 | 6YMI|1|O+ 6YMI|1|P | Chains: A,C,F,I,M,O, Chains: B,D,G,J,N,P | Roseobacter sp. | Crystal structure of the SAM-SAH riboswitch with AMP | X-ray diffraction | 2.5 | 2020-07-22 | |||
| 23 | 6YMJ|1|C+ 6YMJ|1|D | Chains: A,C,F,I,M,O, Chains: B,D,G,J,N,P | Roseobacter sp. | Crystal structure of the SAM-SAH riboswitch with adenosine | X-ray diffraction | 2.04 | 2020-07-22 | |||
| 24 | 6YLB|1|C+ 6YLB|1|D | Chains: A,C,F,I,M,O, Chains: B,D,G,J,N,P | Roseobacter sp. | Crystal structure of the SAM-SAH riboswitch with SAM | X-ray diffraction | 2.12 | 2020-07-22 | |||
| 25 | 6YLB|1|A+ 6YLB|1|B | Chains: A,C,F,I,M,O, Chains: B,D,G,J,N,P | Roseobacter sp. | Crystal structure of the SAM-SAH riboswitch with SAM | X-ray diffraction | 2.12 | 2020-07-22 | |||
| 26 | 6YMI|1|I+ 6YMI|1|J | Chains: A,C,F,I,M,O, Chains: B,D,G,J,N,P | Roseobacter sp. | Crystal structure of the SAM-SAH riboswitch with AMP | X-ray diffraction | 2.5 | 2020-07-22 | |||
| 27 | 6YMJ|1|I+ 6YMJ|1|J | Chains: A,C,F,I,M,O, Chains: B,D,G,J,N,P | Roseobacter sp. | Crystal structure of the SAM-SAH riboswitch with adenosine | X-ray diffraction | 2.04 | 2020-07-22 | |||
| 28 | 6YMJ|1|O+ 6YMJ|1|P | Chains: A,C,F,I,M,O, Chains: B,D,G,J,N,P | Roseobacter sp. | Crystal structure of the SAM-SAH riboswitch with adenosine | X-ray diffraction | 2.04 | 2020-07-22 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6YMK|1|A+6YMK|1|B | Crystal structure of the SAM-SAH riboswitch with AMP | X-RAY DIFFRACTION | 2.03 | 25 |
| 2 | 6YLB|1|A+6YLB|1|B | Crystal structure of the SAM-SAH riboswitch with SAM | X-RAY DIFFRACTION | 2.12 | 25 |
| 3 | 6YLB|1|F+6YLB|1|G | Crystal structure of the SAM-SAH riboswitch with SAM | X-RAY DIFFRACTION | 2.12 | 25 |
| 4 | 6YMK|1|M+6YMK|1|N | Crystal structure of the SAM-SAH riboswitch with AMP | X-RAY DIFFRACTION | 2.03 | 25 |
| 5 | 6YLB|1|M+6YLB|1|N | Crystal structure of the SAM-SAH riboswitch with SAM | X-RAY DIFFRACTION | 2.12 | 25 |
| 6 | 6YML|1|A+6YML|1|B | Crystal structure of the SAM-SAH riboswitch with decarboxylated SAH | X-RAY DIFFRACTION | 2.17 | 25 |
| 7 | 6YMM|1|A+6YMM|1|B | Crystal structure of the SAM-SAH riboswitch with SAM from space group P312 | X-RAY DIFFRACTION | 2.2 | 25 |
| 8 | 6YMJ|1|A+6YMJ|1|B | Crystal structure of the SAM-SAH riboswitch with adenosine | X-RAY DIFFRACTION | 2.04 | 25 |
| 9 | 6YMI|1|A+6YMI|1|B | Crystal structure of the SAM-SAH riboswitch with AMP | X-RAY DIFFRACTION | 2.5 | 25 |
| 10 | 6YMI|1|M+6YMI|1|N | Crystal structure of the SAM-SAH riboswitch with AMP | X-RAY DIFFRACTION | 2.5 | 25 |
| 11 | 6YMI|1|F+6YMI|1|G | Crystal structure of the SAM-SAH riboswitch with AMP | X-RAY DIFFRACTION | 2.5 | 25 |
| 12 | 6YMK|1|F+6YMK|1|G | Crystal structure of the SAM-SAH riboswitch with AMP | X-RAY DIFFRACTION | 2.03 | 25 |
| 13 | 6YMJ|1|F+6YMJ|1|G | Crystal structure of the SAM-SAH riboswitch with adenosine | X-RAY DIFFRACTION | 2.04 | 25 |
| 14 | 6YMJ|1|M+6YMJ|1|N | Crystal structure of the SAM-SAH riboswitch with adenosine | X-RAY DIFFRACTION | 2.04 | 25 |
| 15 | 6YMM|1|C+6YMM|1|D | Crystal structure of the SAM-SAH riboswitch with SAM from space group P312 | X-RAY DIFFRACTION | 2.2 | 25 |
| 16 | 6YML|1|C+6YML|1|D | Crystal structure of the SAM-SAH riboswitch with decarboxylated SAH | X-RAY DIFFRACTION | 2.17 | 25 |
| 17 | 6YLB|1|C+6YLB|1|D | Crystal structure of the SAM-SAH riboswitch with SAM | X-RAY DIFFRACTION | 2.12 | 25 |
| 18 | 6YMK|1|C+6YMK|1|D | Crystal structure of the SAM-SAH riboswitch with AMP | X-RAY DIFFRACTION | 2.03 | 25 |
| 19 | 6YMJ|1|C+6YMJ|1|D | Crystal structure of the SAM-SAH riboswitch with adenosine | X-RAY DIFFRACTION | 2.04 | 25 |
| 20 | 6YMI|1|C+6YMI|1|D | Crystal structure of the SAM-SAH riboswitch with AMP | X-RAY DIFFRACTION | 2.5 | 25 |
| 21 | 6YMI|1|I+6YMI|1|J | Crystal structure of the SAM-SAH riboswitch with AMP | X-RAY DIFFRACTION | 2.5 | 25 |
| 22 | 6YMI|1|O+6YMI|1|P | Crystal structure of the SAM-SAH riboswitch with AMP | X-RAY DIFFRACTION | 2.5 | 25 |
| 23 | 6YMJ|1|O+6YMJ|1|P | Crystal structure of the SAM-SAH riboswitch with adenosine | X-RAY DIFFRACTION | 2.04 | 25 |
| 24 | 6YMJ|1|I+6YMJ|1|J | Crystal structure of the SAM-SAH riboswitch with adenosine | X-RAY DIFFRACTION | 2.04 | 25 |
| 25 | 6YMK|1|I+6YMK|1|J | Crystal structure of the SAM-SAH riboswitch with AMP | X-RAY DIFFRACTION | 2.03 | 25 |
| 26 | 6YMK|1|O+6YMK|1|P | Crystal structure of the SAM-SAH riboswitch with AMP | X-RAY DIFFRACTION | 2.03 | 25 |
| 27 | 6YLB|1|O+6YLB|1|P | Crystal structure of the SAM-SAH riboswitch with SAM | X-RAY DIFFRACTION | 2.12 | 25 |
| 28 | 6YLB|1|I+6YLB|1|J | Crystal structure of the SAM-SAH riboswitch with SAM | X-RAY DIFFRACTION | 2.12 | 25 |
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