#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
1157D|A (rep)CRYSTAL AND MOLECULAR STRUCTURE OF R(CGCGAAUUAGCG): AN RNA DUPLEX CONTAINING TWO G(ANTI).A(ANTI) BASE-PAIRSX-ray diffraction1.81994-05-31
217RA|ABRANCHPOINT HELIX FROM YEAST AND BINDING SITE FOR PHAGE GA/MS2 COAT PROTEINS, NMR, 12 STRUCTURESSolution NMR1999-04-20
31A34|BSATELLITE TOBACCO MOSAIC VIRUS/RNA COMPLEXX-ray diffraction1.811998-04-29
41AC3|ASOLUTION STRUCTURE OF AN RNA-DNA HYBRID DUPLEX CONTAINING A 3'-THIOFORMACETAL LINKER AND AN RNA A-TRACT, NMR, 8 STRUCTURESSolution NMR1997-06-16
51AL5|Asynthetic constructA-TRACT RNA DODECAMER, NMR, 12 STRUCTURESSolution NMR1997-12-17
61CX5|AANTISENSE DNA/RNA HYBRID CONTAINING MODIFIED BACKBONESolution NMR1999-09-14
71DI2|CCRYSTAL STRUCTURE OF A DSRNA-BINDING DOMAIN COMPLEXED WITH DSRNA: MOLECULAR BASIS OF DOUBLE-STRANDED RNA-PROTEIN INTERACTIONSX-ray diffraction1.91999-12-02
81DRR|ADNA/RNA HYBRID DUPLEX CONTAINING A PURINE-RICH DNA STRAND, NMR, 10 STRUCTURESSolution NMR1998-04-22
91EFO|BCRYSTAL STRUCTURE OF AN ADENINE BULGE IN THE RNA CHAIN OF A DNA/RNA HYBRID, D(CTCCTCTTC)/R(GAAGAGAGAG)X-ray diffraction2.32000-05-29
101FIX|ATHE STRUCTURE OF AN RNA/DNA HYBRID: A SUBSTRATE OF THE RIBONUCLEASE ACTIVITY OF HIV-1 REVERSE TRANSCRIPTASEX-ray diffraction2.31996-12-11
111G4Q|ARNA/DNA HYBRID DECAMER OF CAAAGAAAAG/CTTTTCTTTGX-ray diffraction1.152003-07-08
121JB8|AThe Crystal Structure of an RNA/DNA Hybrid Reveals Novel Intermolecular IntercalationX-ray diffraction2.382003-07-01
131OO7|ADNA.RNA HYBRID DUPLEX CONTAINING A 5-PROPYNE DNA STRAND AND PURINE-RICH RNA STRAND, NMR, 4 STRUCTURESSolution NMR2003-11-11
141PJG|ARNA/DNA Hybrid Decamer of CAAAGAAAAG/CTTTTCTTTGX-ray diffraction1.152003-12-09
151PJO|ACrystal Structure of an RNA/DNA hybrid of HIV-1 PPTX-ray diffraction1.12003-12-09
161R9S|RRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MATCHED NUCLEOTIDEX-ray diffraction4.252004-11-16
171R9T|RRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDEX-ray diffraction3.52004-11-16
181RC7|BCrystal structure of RNase III Mutant E110K from Aquifex Aeolicus complexed with ds-RNA at 2.15 Angstrom ResolutionX-ray diffraction2.152004-03-30
191RNA|ACRYSTALLOGRAPHIC STRUCTURE OF AN RNA HELIX: [U(U-A)6A]2X-ray diffraction2.251991-04-15
201RRD|ADNA/RNA HYBRID DUPLEX CONTAINING A PURINE-RICH RNA STRAND, NMR, 10 STRUCTURESSolution NMR1998-04-22
211RRR|ARNA DUPLEX CONTAINING A PURINE-RICH STRAND, NMR, 10 STRUCTURESSolution NMR1998-04-22
221SFO|RRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEXX-ray diffraction3.612004-03-02
231Y1W|PComplete RNA Polymerase II elongation complexX-ray diffraction42005-01-04
241Y77|PComplete RNA Polymerase II elongation complex with substrate analogue GMPCPPX-ray diffraction4.52005-01-04
251YY0|ACrystal structure of an RNA duplex containing a 2'-amine substitution and a 2'-amide product produced by in-crystal acylation at a C-A mismatchX-ray diffraction3.22005-10-18
261YYK|CCrystal structure of RNase III from Aquifex Aeolicus complexed with double-stranded RNA at 2.5-angstrom resolutionX-ray diffraction2.52005-11-22
271YYO|CCrystal structure of RNase III mutant E110K from Aquifex aeolicus complexed with double-stranded RNA at 2.9-Angstrom ResolutionX-ray diffraction2.92005-11-22
281YYW|ECrystal structure of RNase III from Aquifex aeolicus complexed with double stranded RNA at 2.8-Angstrom ResolutionX-ray diffraction2.82005-11-22
291YZD|ACrystal structure of an RNA duplex containing a site specific 2'-amine substitution at a C-G Watson-Crick base pairX-ray diffraction2.352005-10-18
301Z79|ACrystal structure of an RNA duplex containing site specific 2'-amine substitution at a C-A mismatch (at pH 5)X-ray diffraction2.552005-10-18
311Z7F|ACrystal structure of 16 base pair RNA duplex containing a C-A mismatchX-ray diffraction2.12005-10-18
321ZBI|CBacillus halodurans RNase H catalytic domain mutant D132N in complex with 12-mer RNA/DNA hybridX-ray diffraction1.852005-07-12
331ZBL|CBacillus halodurans RNase H catalytic domain mutant D192N in complex with 12-mer RNA/DNA hybridX-ray diffraction2.22005-07-12
34205D|ASTRUCTURE OF AN RNA DOUBLE HELIX INCLUDING URACIL-URACIL BASE PAIRS IN AN INTERNAL LOOPX-ray diffraction2.641995-09-15
35219D|ADNA/RNA HYBRID DUPLEX (5'-D(*GP*CP*TP*AP*TP*AP*APS*TP*GP*G)-3')(DOT) (5'-R(*CP*CP*AP*UP*UP*AP*UP*AP*GP*C)-3') WITH A PHOSPHOROTHIOATE MOIETYSolution NMR1995-10-15
36280D|ATHE STRUCTURE OF AN RNA DODECAMER SHOWS HOW TANDEM U-U BASE PAIRS INCREASE THE RANGE OF STABLE RNA STRUCTURES AND THE DIVERSITY OF RECOGNITION SITESX-ray diffraction2.41996-09-30
372E2H|RRNA polymerase II elongation complex at 5 mM Mg2+ with GTPX-ray diffraction3.952006-12-12
382E2I|RRNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dGTPX-ray diffraction3.412006-12-19
392G92|ACrystal Structure Analysis of the RNA Dodecamer CGC-(NF2)-AAUUAGCG, with an Incorporated 2,4-Difluorotoluyl Residue (NF2)X-ray diffraction1.612006-04-18
402H1M|ASynthesis, Oxidation Behavior, Crystallization and Structure of 2'-Methylseleno Guanosine Containing RNAsX-ray diffraction2.92006-07-18
412JA5|Psynthetic constructCPD lesion containing RNA Polymerase II elongation complex AX-ray diffraction3.82007-02-20
422JA6|Psynthetic constructCPD lesion containing RNA Polymerase II elongation complex BX-ray diffraction42007-02-20
432JA7|3synthetic constructCPD lesion containing RNA Polymerase II elongation complex CX-ray diffraction3.82007-02-20
442JA8|Psynthetic constructCPD lesion containing RNA Polymerase II elongation complex DX-ray diffraction3.82007-02-20
452JXQ|ANMR structure of RNA duplexSolution NMR2008-05-20
462JXS|ANMR structure of RNA duplex containing single adenosine bulgeSolution NMR2008-05-20
472KP3|AStructure of ANA-RNA hybrid duplexSolution NMR2010-02-09
482KP4|AStructure of 2'F-ANA/RNA hybrid duplexSolution NMR2010-02-09
492KXZ|AThe Structure of RNA Internal Loops with Tandem AG Pairs: 5'AAGU/3'UGAASolution NMR2010-06-02
502KY0|AThe Structure of RNA Internal Loops with Tandem AG Pairs: 5'GAGC/3'CGAGSolution NMR2010-06-02
512KY1|AThe Structure of RNA Internal Loops with Tandem AG Pairs: 5'UAGA/3'AGAUSolution NMR2010-06-02
522NUG|CCrystal structure of RNase III from Aquifex aeolicus complexed with ds-RNA at 1.7-Angstrom ResolutionX-ray diffraction1.72007-11-20
532NVQ|Rsynthetic constructRNA Polymerase II Elongation Complex in 150 mM Mg+2 with 2'dUTPX-ray diffraction2.92006-12-12
542NVT|RRNA Polymerase II Elongation Complex in 150 mM Mg+2 with GMPCPPX-ray diffraction3.362006-12-12
552NVX|RRNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dUTPX-ray diffraction3.62006-12-19
562NVZ|Rsynthetic constructRNA Polymerase II elongation complex with UTP, updated 11/2006X-ray diffraction4.32006-12-19
572Q1O|ACrystal Structure Analysis of the RNA Dodecamer CGC-NF2-AAUUGGCG, with an Incorporated 2,4-Difluorotoluyl Residue (NF2)X-ray diffraction1.12007-10-30
582Q1R|ACrystal Structure Analysis of the RNA Dodecamer CGCGAAUUAGCG, with a G-A mismatch.X-ray diffraction1.122007-10-30
592QK9|BHuman RNase H catalytic domain mutant D210N in complex with 18-mer RNA/DNA hybridX-ray diffraction2.552007-11-13
602QKB|CHuman RNase H catalytic domain mutant D210N in complex with 20-mer RNA/DNA hybridX-ray diffraction2.42007-11-13
612QKK|CHuman RNase H catalytic domain mutant D210N in complex with 14-mer RNA/DNA hybridX-ray diffraction3.22007-11-13
622R7Z|PCisplatin lesion containing RNA polymerase II elongation complexX-ray diffraction3.82007-11-20
632R92|TElongation complex of RNA polymerase II with artificial RdRP scaffoldX-ray diffraction3.82007-11-27
642VUM|Psynthetic constructAlpha-amanitin inhibited complete RNA polymerase II elongation complexX-ray diffraction3.42008-06-17
652YU9|Rsynthetic constructRNA polymerase II elongation complex in 150 mm MG+2 with UTPX-ray diffraction3.42007-04-24
66353D|ACRYSTAL STRUCTURE OF DOMAIN A OF THERMUS FLAVUS 5S RRNA AND THE CONTRIBUTION OF WATER MOLECULES TO ITS STRUCTUREX-ray diffraction2.41997-11-10
67397D|AA 1.3 A RESOLUTION CRYSTAL STRUCTURE OF THE HIV-1 TRANS-ACTIVATION RESPONSE REGION RNA STEM REVEALS A METAL ION-DEPENDENT BULGE CONFORMATIONX-ray diffraction1.31998-09-11
683ADL|BStructure of TRBP2 and its molecule implications for miRNA processingX-ray diffraction2.22010-05-26
693BSU|DHybrid-binding domain of human RNase H1 in complex with 12-mer RNA/DNAX-ray diffraction2.12008-03-25
703CGP|BX-ray structure of a pseudouridine-containing yeast spliceosomal U2 snRNA-intron branch site duplex bound to iodide ionsX-ray diffraction1.572008-07-01
713CGQ|BX-ray structure of a pseudouridine-containing yeast spliceosomal U2 snRNA-intron branch site duplexX-ray diffraction2.552008-07-01
723CGR|BX-ray structure containing the pseudouridylated U2 snRNA and intron branch site consensus sequencesX-ray diffraction2.12008-07-01
733CGS|BX-ray structure containing the pseudouridylated U2 snRNA and mammalian intron branch site consensus sequencesX-ray diffraction1.652008-07-01
743GTG|RBacktracked RNA polymerase II complex with 12mer RNAX-ray diffraction3.782009-06-09
753GTJ|RBacktracked RNA polymerase II complex with 13mer RNAX-ray diffraction3.422009-06-09
763GTL|RBacktracked RNA polymerase II complex with 13mer with G<>U mismatchX-ray diffraction3.382009-06-09
773GTM|Msynthetic constructCo-complex of Backtracked RNA polymerase II with TFIISX-ray diffraction3.82009-06-09
783GTO|RBacktracked RNA polymerase II complex with 15mer RNAX-ray diffraction42009-06-09
793GTP|RBacktracked RNA polymerase II complex with 24mer RNAX-ray diffraction3.92009-06-09
803GTQ|RBacktracked RNA polymerase II complex induced by damageX-ray diffraction3.82009-06-09
813HOU|3Complete RNA polymerase II elongation complex I with a T-U mismatchX-ray diffraction3.22009-07-28
823HOV|PComplete RNA polymerase II elongation complex IIX-ray diffraction3.52009-07-28
833HOW|3Complete RNA polymerase II elongation complex III with a T-U mismatch and a frayed RNA 3'-uridineX-ray diffraction3.62009-07-28
843HOX|PComplete RNA polymerase II elongation complex VX-ray diffraction3.652009-07-28
853HOY|PComplete RNA polymerase II elongation complex VIX-ray diffraction3.42009-07-28
863HOZ|PComplete RNA polymerase II elongation complex IV with a T-U mismatch and a frayed RNA 3'-guanineX-ray diffraction3.652009-07-28
873I4M|P8-oxoguanine containing RNA polymerase II elongation complex DX-ray diffraction3.72009-09-08
883I4N|P8-oxoguanine containing RNA polymerase II elongation complex EX-ray diffraction3.92009-09-08
893LRN|CCrystal structure of human RIG-I CTD bound to a 14 bp GC 5' ppp dsRNAX-ray diffraction2.62010-06-02
903M3Y|RRNA polymerase II elongation complex CX-ray diffraction3.182010-05-12
913M4O|RRNA polymerase II elongation complex BX-ray diffraction3.572010-05-12
923NCU|CStructural and functional insights into pattern recognition by the innate immune receptor RIG-IX-ray diffraction2.552010-06-30
933OG8|CCrystal structure of human RIG-I CTD bound to a 14-bp blunt-ended dsRNAX-ray diffraction2.42010-11-03
94404D|ACRYSTAL STRUCTURE OF THE RNA/DNA HYBRID R(GAAGAGAAGC). D(GCTTCTCTTC)X-ray diffraction2.51998-12-14
95405D|ASTRUCTURE OF A 16-MER RNA DUPLEX R(GCAGACUUAAAUCUGC)2 WITH WOBBLE LIKE A.C MISMATCHESX-ray diffraction2.51999-01-13

Release history

Release0.170.18
Date2011-05-142011-05-21

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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
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