Equivalence class NR_4.0_64918.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6O6X|1|D (rep) | Cyclic RNA cA4 | synthetic construct | Synthetic | Crystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallization | X-ray diffraction | 2.11 | 2019-07-31 | ||
| 2 | 4BA2|1|R | 5'-R(*AP*AP*AP*AP)-3' | Saccharolobus solfataricus | Archaea | Archaeal exosome (Rrp4-Rrp41(D182A)-Rrp42) bound to inorganic phosphate | X-ray diffraction | 2.5 | 2012-10-03 | ||
| 3 | 6O6X|1|C | Cyclic RNA cA4 | synthetic construct | Synthetic | Crystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallization | X-ray diffraction | 2.11 | 2019-07-31 | ||
| 4 | 6O7B|1|C | Cyclic RNA cA4 | synthetic construct | Synthetic | Crystal structure of Csm1-Csm4 cassette in complex with cA4 | X-ray diffraction | 2.4 | 2019-07-31 | ||
| 5 | 6O6V|1|C | Cyclic RNA cA4 | synthetic construct | Synthetic | Crystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6 | X-ray diffraction | 2.35 | 2019-07-31 | ||
| 6 | 6OV0|1|E | RNA (5'-R(*AP*AP*AP*(A23))-3') | synthetic construct | Synthetic | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-ray diffraction | 2.8 | 2019-07-31 | ||
| 7 | 6OV0|1|H | RNA (5'-R(*AP*AP*AP*(A23))-3') | synthetic construct | Synthetic | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-ray diffraction | 2.8 | 2019-07-31 | ||
| 8 | 6OV0|1|G | RNA (5'-R(*AP*AP*AP*(A23))-3') | synthetic construct | Synthetic | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-ray diffraction | 2.8 | 2019-07-31 | ||
| 9 | 6O6V|1|D | Cyclic RNA cA4 | synthetic construct | Synthetic | Crystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6 | X-ray diffraction | 2.35 | 2019-07-31 | ||
| 10 | 6OV0|1|F | RNA (5'-R(*AP*AP*AP*(A23))-3') | synthetic construct | Synthetic | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-ray diffraction | 2.8 | 2019-07-31 | ||
| 11 | 6O7B|1|D | Cyclic RNA cA4 | synthetic construct | Synthetic | Crystal structure of Csm1-Csm4 cassette in complex with cA4 | X-ray diffraction | 2.4 | 2019-07-31 | ||
| 12 | 5E02|1|C | RNA (5'-R(*AP*AP*AP*A)-3') | synthetic construct | Synthetic | Structure of RNA Helicase FRH a Critical Component of the Neurospora Crassa Circadian Clock | X-ray diffraction | 3.8 | 2016-07-06 | ||
| 13 | 6O7I|1|I | RNA (5'-R(P*AP*AP*AP*A)-3') | synthetic construct | Synthetic | Cryo-EM structure of Csm-crRNA-target RNA ternary bigger complex in complex with cA4 in type III-A CRISPR-Cas system | Electron microscopy | 3.2 | 2019-07-31 | ||
| 14 | 6O7H|1|K | Cyclic DNA cA4 | synthetic construct | Synthetic | Cryo-EM structure of Csm-crRNA-target RNA ternary complex in complex with cA4 in type III-A CRISPR-Cas system | Electron microscopy | 2.9 | 2019-07-31 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_64918.1 | NR_4.0_81599.1 | 3.85 | (1) 5E02|1|C | (13) 6OV0|1|H, 6OV0|1|G, 6OV0|1|F, 6OV0|1|E, 6O7I|1|I, 6O7H|1|K, 6O7B|1|D, 6O7B|1|C, 6O6X|1|D, 6O6X|1|C, 6O6V|1|D, 6O6V|1|C, 4BA2|1|R | (0) |
| NR_4.0_64918.1 | NR_4.0_94845.1 | 3.85 | (1) 4BA2|1|R | (13) 6OV0|1|H, 6OV0|1|G, 6OV0|1|F, 6OV0|1|E, 6O7I|1|I, 6O7H|1|K, 6O7B|1|D, 6O7B|1|C, 6O6X|1|D, 6O6X|1|C, 6O6V|1|D, 6O6V|1|C, 5E02|1|C | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_64918.1 | NR_4.0_64918.2 | 3.94 | (14) 6O6V|1|D, 6O7B|1|D, 6OV0|1|F, 6O6V|1|C, 6O7B|1|C, 6OV0|1|E, 5E02|1|C, 6O6X|1|D, 6O7I|1|I, 6OV0|1|H, 4BA2|1|R, 6O6X|1|C, 6O7H|1|K, 6OV0|1|G | (0) | (4) 6R7B|1|D, 6R9R|1|E, 6R9R|1|D, 6R7B|1|E |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6O7B|1|C | Crystal structure of Csm1-Csm4 cassette in complex with cA4 | X-RAY DIFFRACTION | 2.4 | 4 |
| 2 | 6OV0|1|E | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-RAY DIFFRACTION | 2.8 | 3 |
| 3 | 6OV0|1|H | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-RAY DIFFRACTION | 2.8 | 3 |
| 4 | 6O6V|1|D | Crystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6 | X-RAY DIFFRACTION | 2.35 | 4 |
| 5 | 6O6X|1|C | Crystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallization | X-RAY DIFFRACTION | 2.11 | 4 |
| 6 | 6O6X|1|D | Crystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallization | X-RAY DIFFRACTION | 2.11 | 4 |
| 7 | 6O6V|1|C | Crystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6 | X-RAY DIFFRACTION | 2.35 | 4 |
| 8 | 6O7I|1|I | Cryo-EM structure of Csm-crRNA-target RNA ternary bigger complex in complex with cA4 in type III-A CRISPR-Cas system | ELECTRON MICROSCOPY | 3.2 | 4 |
| 9 | 6O7B|1|D | Crystal structure of Csm1-Csm4 cassette in complex with cA4 | X-RAY DIFFRACTION | 2.4 | 4 |
| 10 | 6O7H|1|K | Cryo-EM structure of Csm-crRNA-target RNA ternary complex in complex with cA4 in type III-A CRISPR-Cas system | ELECTRON MICROSCOPY | 2.9 | 4 |
| 11 | 5E02|1|C | Structure of RNA Helicase FRH a Critical Component of the Neurospora Crassa Circadian Clock | X-RAY DIFFRACTION | 3.8 | 4 |
| 12 | 4BA2|1|R | Archaeal exosome (Rrp4-Rrp41(D182A)-Rrp42) bound to inorganic phosphate | X-RAY DIFFRACTION | 2.5 | 4 |
| 13 | 6OV0|1|G | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-RAY DIFFRACTION | 2.8 | 2 |
| 14 | 6OV0|1|F | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-RAY DIFFRACTION | 2.8 | 2 |