BGSU RNA Site //

Equivalence class NR_4.0_65028.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
1359D|1|B+ 359D|1|A (rep)RNA HAMMERHEAD RIBOZYMEINHIBITION OF THE HAMMERHEAD RIBOZYME CLEAVAGE REACTION BY SITE-SPECIFIC BINDING OF TB(III)X-ray diffraction2.91997-11-07
21MME|1|B+ 1MME|1|ARNA HAMMERHEAD RIBOZYMETHE CRYSTAL STRUCTURE OF AN ALL-RNA HAMMERHEAD RIBOZYME: A PROPOSED MECHANISM FOR RNA CATALYTIC CLEAVAGEX-ray diffraction3.11996-02-06
3299D|1|B+ 299D|1|ARNA HAMMERHEAD RIBOZYMECAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: THE HAMMERHEAD RIBOZYMEX-ray diffraction31997-01-24
4301D|1|B+ 301D|1|ARNA HAMMERHEAD RIBOZYMECAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: RNA HAMMERHEAD RIBOZYME, MG(II)-SOAKEDX-ray diffraction31997-01-24
5300D|1|B+ 300D|1|ARNA HAMMERHEAD RIBOZYMECAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: RNA HAMMERHEAD RIBOZYME, MN(II)-SOAKEDX-ray diffraction31997-01-24
61MME|1|D+ 1MME|1|CRNA HAMMERHEAD RIBOZYMETHE CRYSTAL STRUCTURE OF AN ALL-RNA HAMMERHEAD RIBOZYME: A PROPOSED MECHANISM FOR RNA CATALYTIC CLEAVAGEX-ray diffraction3.11996-02-06
7488D|1|D+ 488D|1|B+ 488D|1|A+ 488D|1|CRNA RIBOZYME STRAND, FIRST RNA FRAGMENT OF CLEAVED SUBSTRATE, SECOND RNA FRAGMENT OF CLEAVED SUBSTRATE, UNCLEAVED RNA SUBSTRATECATALYTIC RNA ENZYME-PRODUCT COMPLEXX-ray diffraction3.12000-03-06
8379D|1|B+ 379D|1|ARNA (5'-R(*GP*UP*GP*GP*UP*CP*UP*GP*AP*UP*GP*AP*GP*GP*CP*C)-3'), RNA (5'-R(*GP*GP*CP*CP*GP*AP*AP*AP*CP*UP*CP*GP*UP*AP*AP*GP*A P*GP*UP*CP*AP*CP*CP*AP*C)-3')THE STRUCTURAL BASIS OF HAMMERHEAD RIBOZYME SELF-CLEAVAGEX-ray diffraction3.11998-02-11

Release history

Release2.02.12.22.32.42.52.62.72.82.92.102.112.122.132.142.152.162.172.182.192.202.212.222.232.242.252.262.272.282.292.302.312.322.332.342.352.362.372.382.392.402.412.422.432.442.452.462.472.482.492.502.512.522.532.542.552.562.572.582.592.602.612.622.632.642.652.662.672.682.692.702.712.722.732.742.752.762.772.782.792.802.812.822.832.842.852.862.872.882.892.902.912.92
Date2014-12-052014-12-122014-12-192014-12-262015-01-022015-01-092015-01-162015-01-232015-01-302015-02-062015-02-132015-02-202015-02-272015-03-062015-03-132015-03-202015-03-272015-04-032015-04-102015-04-172015-04-242015-05-012015-05-082015-05-152015-05-222015-05-292015-06-052015-06-122015-06-192015-06-262015-07-032015-07-102015-07-172015-07-242015-07-312015-08-072015-08-142015-08-212015-08-282015-09-042015-09-112015-09-182015-09-252015-10-022015-10-092015-10-162015-10-232015-10-302015-11-062015-11-132015-11-202015-11-272015-12-042015-12-112015-12-182015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-192016-02-262016-03-042016-03-112016-03-182016-03-252016-04-012016-04-082016-04-152016-04-222016-04-292016-05-062016-05-132016-05-202016-05-272016-06-032016-06-102016-06-172016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-262016-09-022016-09-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_65028.1NR_4.0_65028.22.93(8) 1MME|1|B+1MME|1|A, 488D|1|D+488D|1|B+488D|1|A+488D|1|C, 379D|1|B+379D|1|A, 359D|1|B+359D|1|A, 301D|1|B+301D|1|A, 300D|1|B+300D|1|A, 299D|1|B+299D|1|A, 1MME|1|D+1MME|1|C(0) (2) 1NYI|1|B+1NYI|1|A, 1Q29|1|B+1Q29|1|A

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
1301D|1|B+301D|1|ACAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: RNA HAMMERHEAD RIBOZYME, MG(II)-SOAKEDX-RAY DIFFRACTION325
21MME|1|D+1MME|1|CTHE CRYSTAL STRUCTURE OF AN ALL-RNA HAMMERHEAD RIBOZYME: A PROPOSED MECHANISM FOR RNA CATALYTIC CLEAVAGEX-RAY DIFFRACTION3.125
31MME|1|B+1MME|1|ATHE CRYSTAL STRUCTURE OF AN ALL-RNA HAMMERHEAD RIBOZYME: A PROPOSED MECHANISM FOR RNA CATALYTIC CLEAVAGEX-RAY DIFFRACTION3.125
4359D|1|B+359D|1|AINHIBITION OF THE HAMMERHEAD RIBOZYME CLEAVAGE REACTION BY SITE-SPECIFIC BINDING OF TB(III)X-RAY DIFFRACTION2.925
5299D|1|B+299D|1|ACAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: THE HAMMERHEAD RIBOZYMEX-RAY DIFFRACTION325
6300D|1|B+300D|1|ACAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: RNA HAMMERHEAD RIBOZYME, MN(II)-SOAKEDX-RAY DIFFRACTION325
7488D|1|D+488D|1|B+488D|1|A+488D|1|CCATALYTIC RNA ENZYME-PRODUCT COMPLEXX-RAY DIFFRACTION3.125
8379D|1|B+379D|1|ATHE STRUCTURAL BASIS OF HAMMERHEAD RIBOZYME SELF-CLEAVAGEX-RAY DIFFRACTION3.125