Equivalence class NR_4.0_66115.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6CB3|1|B (rep) | RNA (99-MER) | Lactococcus lactis | Crystal structure of the L.Lactis YkoY riboswitch bound to cadmium | X-ray diffraction | 1.89 | 2018-06-13 | |||
| 2 | 6CB3|1|A | RNA (99-MER) | Lactococcus lactis | Crystal structure of the L.Lactis YkoY riboswitch bound to cadmium | X-ray diffraction | 1.89 | 2018-06-13 | |||
| 3 | 6CC3|1|A | yybP-ykoY manganese riboswitch | RNA (101-MER) | Lactococcus lactis | Bacteria | RF00080 | Crystal structure of ykoY-mntP riboswitch chimera bound to cadmium | X-ray diffraction | 2.7 | 2018-06-13 |
| 4 | 6CC3|1|B | yybP-ykoY manganese riboswitch | RNA (101-MER) | Lactococcus lactis | Bacteria | RF00080 | Crystal structure of ykoY-mntP riboswitch chimera bound to cadmium | X-ray diffraction | 2.7 | 2018-06-13 |
| 5 | 6CC1|1|B | yybP-ykoY manganese riboswitch | RNA (94-MER) | Lactococcus lactis | Bacteria | RF00080 | Crystal structure of ykoY-alx riboswitch chimera bound to cadmium | X-ray diffraction | 2.54 | 2018-06-13 |
| 6 | 6CC1|1|A | yybP-ykoY manganese riboswitch | RNA (94-MER) | Lactococcus lactis | Bacteria | RF00080 | Crystal structure of ykoY-alx riboswitch chimera bound to cadmium | X-ray diffraction | 2.54 | 2018-06-13 |
Release history
| Release | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-06-15 | 2018-06-22 | 2018-06-29 | 2018-07-06 | 2018-07-13 | 2018-07-20 | 2018-07-27 | 2018-08-03 | 2018-08-10 | 2018-08-17 | 2018-08-24 | 2018-08-31 | 2018-09-07 | 2018-09-14 | 2018-09-21 | 2018-09-28 | 2018-10-05 | 2018-10-12 | 2018-10-19 | 2018-10-26 | 2018-11-02 | 2018-11-09 | 2018-11-16 | 2018-11-23 | 2018-11-30 | 2018-12-07 | 2018-12-14 | 2018-12-21 | 2018-12-28 | 2019-01-04 | 2019-01-11 | 2019-01-18 | 2019-01-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 6CC1|1|B | Crystal structure of ykoY-alx riboswitch chimera bound to cadmium | X-RAY DIFFRACTION | 2.54 | 100 | |
| 2 | 6CB3|1|B | Crystal structure of the L.Lactis YkoY riboswitch bound to cadmium | X-RAY DIFFRACTION | 1.89 | 99 | |
| 3 | 6CC1|1|A | Crystal structure of ykoY-alx riboswitch chimera bound to cadmium | X-RAY DIFFRACTION | 2.54 | 94 | |
| 4 | 6CB3|1|A | Crystal structure of the L.Lactis YkoY riboswitch bound to cadmium | X-RAY DIFFRACTION | 1.89 | 99 | |
| 5 | 6CC3|1|A | Crystal structure of ykoY-mntP riboswitch chimera bound to cadmium | X-RAY DIFFRACTION | 2.7 | 100 | |
| 6 | 6CC3|1|B | Crystal structure of ykoY-mntP riboswitch chimera bound to cadmium | X-RAY DIFFRACTION | 2.7 | 92 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: