BGSU RNA Site //

Equivalence class NR_4.0_68467.10 Current

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
17NWI|1|2 (rep)Transfer RNAP-Site tRNA, mRNAOryctolagus cuniculusEukaryaRF00005Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin SElectron microscopy3.132021-07-07
26T59|1|23Transfer RNAP-site tRNAOryctolagus cuniculusEukaryaRF00005Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complexElectron microscopy3.112019-11-27
37TM3|1|qTransfer RNAP-site tRNAOryctolagus cuniculusEukaryaRF00005Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass transloconElectron microscopy3.252022-10-19
45LZS|1|2Transfer RNAtRNA, mRNAOryctolagus cuniculusEukaryaRF00005Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BElectron microscopy3.312016-11-30
55LZV|1|2Transfer RNAP-site tRNA, mRNA (UGA stop codon)Oryctolagus cuniculusEukaryaRF00005Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.Electron microscopy3.352016-11-30
66GZ5|1|BvTransfer RNAP/P-site-tRNA, mRNAOryctolagus cuniculusEukaryaRF00005tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)Electron microscopy3.52018-12-05
75LZZ|1|2Transfer RNAP-site tRNA, mRNAOryctolagus cuniculusEukaryaRF00005Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)Electron microscopy3.472016-11-30
85LZW|1|2Transfer RNAP-site tRNA, mRNA (truncated)Oryctolagus cuniculusEukaryaRF00005Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.Electron microscopy3.532016-11-30
96GZ4|1|BvTransfer RNAap/P-site tRNA, mRNAOryctolagus cuniculusEukaryaRF00005tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)Electron microscopy3.62018-12-05
106GZ3|1|BvTransfer RNAap/P-site tRNA, mRNAOryctolagus cuniculusEukaryaRF00005tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)Electron microscopy3.62018-12-05
116MTB|1|2Transfer RNAP-site tRNA, mRNAOryctolagus cuniculusEukaryaRF00005Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)Electron microscopy3.62018-11-21
125LZX|1|2Transfer RNAP-site tRNA, mRNA (UGA stop codon)Oryctolagus cuniculusEukaryaRF00005Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.Electron microscopy3.672016-11-30
135LZT|1|2Transfer RNAP-site tRNA, mRNA (UGA stop codon)Oryctolagus cuniculusEukaryaRF00005Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.Electron microscopy3.652016-11-30
146FRK|1|2Transfer RNAtRNAOryctolagus cuniculusEukaryaRF00005Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complexElectron microscopy3.72018-03-28
157TUT|1|qTransfer RNAP-site tRNAOryctolagus cuniculusEukaryaRF00005Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass transloconElectron microscopy3.882022-10-19
163JAH|1|2Transfer RNAtRNA(Val), mRNAOryctolagus cuniculusEukaryaRF00005Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonElectron microscopy3.452015-08-12
176HCF|1|23Transfer RNAP-site tRNA, mRNAOryctolagus cuniculusEukaryaRF00005Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codonElectron microscopy3.92018-10-17
183JAG|1|2Transfer RNAtRNA(Val), mRNAOryctolagus cuniculusEukaryaRF00005Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonElectron microscopy3.652015-08-12
193JAI|1|2Transfer RNAtRNA(Val), mRNAOryctolagus cuniculusEukaryaRF00005Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonElectron microscopy3.652015-08-12
205LZU|1|2Transfer RNAP-site tRNA, mRNA (UGA stop codon)Oryctolagus cuniculusEukaryaRF00005Structure of the mammalian ribosomal termination complex with accommodated eRF1Electron microscopy3.752016-11-30
213JAJ|1|3Transfer RNAVal tRNAOryctolagus cuniculusEukaryaRF00005Structure of the engaged state of the mammalian SRP-ribosome complexElectron microscopy3.752015-08-05
223JAN|1|3Transfer RNAVal tRNAOryctolagus cuniculusEukaryaRF00005Structure of the scanning state of the mammalian SRP-ribosome complexElectron microscopy3.752015-08-05

Release history

Release3.2533.2543.2553.2563.2573.2583.2593.2603.2613.2623.2633.2643.2653.2663.2673.2683.2693.2703.2713.2723.2733.2743.275
Date2022-10-192022-10-262022-11-022022-11-092022-11-162022-11-232022-11-302022-12-072022-12-142022-12-212022-12-282023-01-042023-01-112023-01-182023-01-252023-02-012023-02-082023-02-152023-02-222023-03-012023-03-082023-03-152023-03-22

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_68467.10NR_4.0_68467.93.253(20) 3JAN|1|3, 3JAJ|1|3, 7NWI|1|2, 3JAI|1|2, 6T59|1|23, 3JAH|1|2, 6MTB|1|2, 3JAG|1|2, 6HCF|1|23, 6GZ5|1|Bv, 6GZ4|1|Bv, 6GZ3|1|Bv, 6FRK|1|2, 5LZZ|1|2, 5LZX|1|2, 5LZW|1|2, 5LZV|1|2, 5LZU|1|2, 5LZT|1|2, 5LZS|1|2(2) 7TM3|1|q, 7TUT|1|q(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17NWI|1|2Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin SELECTRON MICROSCOPY3.1376
26HCF|1|23Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codonELECTRON MICROSCOPY3.976
35LZU|1|2Structure of the mammalian ribosomal termination complex with accommodated eRF1ELECTRON MICROSCOPY3.7576
45LZS|1|2Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.3176
56MTB|1|2Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)ELECTRON MICROSCOPY3.676
65LZZ|1|2Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.4776
75LZX|1|2Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.ELECTRON MICROSCOPY3.6776
85LZW|1|2Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.ELECTRON MICROSCOPY3.5376
95LZT|1|2Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.ELECTRON MICROSCOPY3.6576
105LZV|1|2Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.3576
113JAH|1|2Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.4576
123JAG|1|2Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonELECTRON MICROSCOPY3.6576
133JAI|1|2Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonELECTRON MICROSCOPY3.6576
146T59|1|23Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complexELECTRON MICROSCOPY3.1176
157TM3|1|qStructure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass transloconELECTRON MICROSCOPY3.2576
167TUT|1|qStructure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass transloconELECTRON MICROSCOPY3.8876
173JAJ|1|3Structure of the engaged state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.7576
183JAN|1|3Structure of the scanning state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.7576
196FRK|1|2Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complexELECTRON MICROSCOPY3.776
206GZ5|1|BvtRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)ELECTRON MICROSCOPY3.576
216GZ3|1|BvtRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)ELECTRON MICROSCOPY3.676
226GZ4|1|BvtRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)ELECTRON MICROSCOPY3.676