#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16ZMI|1|CC (rep)Transfer RNAtRNAHomo sapiensEukaryaRF00005SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complexElectron microscopy2.62020-08-19
26ZM7|1|CCTransfer RNAtRNAHomo sapiensEukaryaRF00005SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complexElectron microscopy2.72020-07-29
37XNX|1|CCTransfer RNAtRNAHomo sapiensEukaryaRF00005High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cellsElectron microscopy2.72023-04-05
46ZVH|1|xTransfer RNAE-site tRNAHomo sapiensEukaryaRF00005EDF1-ribosome complexElectron microscopy2.92020-08-19
56Z6N|1|CCTransfer RNAtRNAHomo sapiensEukaryaRF00005Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)Electron microscopy2.92020-07-29
66ZME|1|CCTransfer RNAtRNAHomo sapiensEukaryaRF00005SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complexElectron microscopy32020-08-12
77QVP|1|CCTransfer RNAtNRA E/EHomo sapiensEukaryaRF00005Human collided disome (di-ribosome) stalled on XBP1 mRNAElectron microscopy32022-10-12
86Z6L|1|CCTransfer RNAtRNAHomo sapiensEukaryaRF00005Cryo-EM structure of human CCDC124 bound to 80S ribosomesElectron microscopy32020-07-29
96ZMO|1|CCTransfer RNAtRNAHomo sapiensEukaryaRF00005SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complexElectron microscopy3.12020-08-19

Release history

Release3.3333.3343.3353.3363.3373.3383.3393.3403.3413.3423.343
Date2024-05-012024-05-082024-05-152024-05-222024-05-292024-06-052024-06-122024-06-192024-06-262024-07-032024-07-10

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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17XNX|1|CCHigh resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cellsELECTRON MICROSCOPY2.775
26ZVH|1|xEDF1-ribosome complexELECTRON MICROSCOPY2.975
36ZMO|1|CCSARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complexELECTRON MICROSCOPY3.175
46ZMI|1|CCSARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complexELECTRON MICROSCOPY2.675
56ZM7|1|CCSARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complexELECTRON MICROSCOPY2.775
66ZME|1|CCSARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complexELECTRON MICROSCOPY375
76Z6L|1|CCCryo-EM structure of human CCDC124 bound to 80S ribosomesELECTRON MICROSCOPY375
87QVP|1|CCHuman collided disome (di-ribosome) stalled on XBP1 mRNAELECTRON MICROSCOPY375
96Z6N|1|CCCryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)ELECTRON MICROSCOPY2.975
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