Equivalence class NR_4.0_73286.25 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8H6L|1|5A (rep) | U5 spliceosomal RNA | pre-mRNA, U5 snRNA, U6 snRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of human exon-defined spliceosome in the early B state. | Electron microscopy | 2.6 | 2024-05-01 |
| 2 | 8H6K|1|5A | U5 spliceosomal RNA | U5 snRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of human exon-defined spliceosome in the mature B state. | Electron microscopy | 2.7 | 2024-05-01 |
| 3 | 8C6J|1|5 | U5 spliceosomal RNA | PM5 5' Exon, U5 snRNA | Homo sapiens | Eukarya | RF00020 | Human spliceosomal PM5 C* complex | Electron microscopy | 2.8 | 2023-07-12 |
| 4 | 6QW6|1|5 | U5 spliceosomal RNA | U5 snRNA | Homo sapiens | Eukarya | RF00020 | Structure of the human U5.U4/U6 tri-snRNP at 2.9A resolution. | Electron microscopy | 2.92 | 2019-04-17 |
| 5 | 7DVQ|1|B | U5 spliceosomal RNA | pre-mRNA, U5 snRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM Structure of the Activated Human Minor Spliceosome (minor Bact Complex) | Electron microscopy | 2.89 | 2021-03-31 |
| 6 | 7QTT|1|e | U5 spliceosomal RNA | MINX, U5 snRNA | Homo sapiens | Eukarya | RF00020 | Structural organization of a late activated human spliceosome (Baqr, core region) | Electron microscopy | 3.1 | 2023-05-10 |
| 7 | 8QPE|1|5 | U5 spliceosomal RNA | oligo1, oligo2, U5 snRNA, U6 snRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM Structure of Pre-B-like Complex (core part) | Electron microscopy | 3.1 | 2024-05-22 |
| 8 | 8Q7N|1|5 | U5 spliceosomal RNA | U5 snRNA | Homo sapiens | Eukarya | RF00020 | cryo-EM structure of the human spliceosomal B complex protomer (tri-snRNP core region) | Electron microscopy | 3.1 | 2024-01-24 |
| 9 | 8H6E|1|5A | U5 spliceosomal RNA | U5 snRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of human exon-defined spliceosome in the late pre-B state. | Electron microscopy | 3.2 | 2024-05-01 |
| 10 | 8H6J|1|5A | U5 spliceosomal RNA | U5 snRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of human exon-defined spliceosome in the mature pre-B state. | Electron microscopy | 3.25 | 2024-05-01 |
| 11 | 8Q7Q|1|5 | U5 spliceosomal RNA | U5 snRNA | Homo sapiens | Eukarya | RF00020 | Structure of the recycling U5 snRNP bound to chaperones CD2BP2 and TSSC4 (State 2) | Electron microscopy | 3.2 | 2024-04-17 |
| 12 | 8Q91|1|5 | U5 spliceosomal RNA | U5 snRNA | Homo sapiens | Eukarya | RF00020 | Structure of the human 20S U5 snRNP core | Electron microscopy | 3.1 | 2024-03-27 |
| 13 | 6QX9|1|5 | U5 spliceosomal RNA | U5 snRNA | Homo sapiens | Eukarya | RF00020 | Structure of a human fully-assembled precatalytic spliceosome (pre-B complex). | Electron microscopy | 3.28 | 2019-04-17 |
| 14 | 8RC0|1|5 | U5 spliceosomal RNA | U5 snRNA | Homo sapiens | Eukarya | RF00020 | Structure of the human 20S U5 snRNP | Electron microscopy | 3.2 | 2024-03-27 |
| 15 | 8QOZ|1|5 | U5 spliceosomal RNA | 5'ss RNA oligo, U5 snRNA, U6 snRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM Structure of Pre-B+5'ss+ATPgammaS Complex (core part) | Electron microscopy | 3.1 | 2024-05-22 |
| 16 | 9FMD|1|5 | U5 spliceosomal RNA | U5 snRNA | Homo sapiens | Eukarya | RF00020 | Integrative model of the human post-catalytic spliceosome (P-complex) | Electron microscopy | 3.3 | 2024-07-10 |
| 17 | 6QDV|1|5 | U5 spliceosomal RNA | Ligated exons: MINX mRNA, U5 snRNA | Homo sapiens | Eukarya | RF00020 | Human post-catalytic P complex spliceosome | Electron microscopy | 3.3 | 2019-02-20 |
| 18 | 6ZYM|1|5 | U5 spliceosomal RNA | pre-mRNA, U5 snRNA | Homo sapiens | Eukarya | RF00020 | Human C Complex Spliceosome - High-resolution CORE | Electron microscopy | 3.4 | 2020-10-14 |
| 19 | 8Y6O|1|B | U5 spliceosomal RNA | U5 snRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM Structure of the human minor pre-B complex (pre-precatalytic spliceosome) U11 and tri-snRNP part | Electron microscopy | 3.38 | 2024-03-20 |
| 20 | 6ICZ|1|B | U5 spliceosomal RNA | pre-mRNA, U5snRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of a human post-catalytic spliceosome (P complex) at 3.0 angstrom | Electron microscopy | 3 | 2019-03-13 |
| 21 | 7W59|1|B | U5 spliceosomal RNA | pre-mRNA, U5 snRNA | Homo sapiens | Eukarya | RF00020 | The cryo-EM structure of human pre-C*-I complex | Electron microscopy | 3.6 | 2022-06-22 |
| 22 | 7W5A|1|B | U5 spliceosomal RNA | Pre-mRNA, U5 snRNA | Homo sapiens | Eukarya | RF00020 | The cryo-EM structure of human pre-C*-II complex | Electron microscopy | 3.6 | 2022-06-22 |
| 23 | 8QP8|1|5 | U5 spliceosomal RNA | U5 snRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM Structure of Pre-B Complex (core part) | Electron microscopy | 3.5 | 2024-05-22 |
| 24 | 6FF4|1|5 | U5 spliceosomal RNA | pre mRNA, U2 snRNA, U5 snRNA | Homo sapiens | Eukarya | RF00020 | human Bact spliceosome core structure | Electron microscopy | 3.4 | 2018-08-29 |
| 25 | 8Q7V|1|5 | U5 spliceosomal RNA | U5 snRNA | Homo sapiens | Eukarya | RF00020 | Structure of the recycling U5 snRNP bound to chaperones CD2BP2 and TSSC4 (State 1) | Electron microscopy | 3.8 | 2024-04-17 |
| 26 | 8QPA|1|5 | U5 spliceosomal RNA | 5'ss oligo, U5 snRNA, U6 snRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM Structure of Pre-B+5'ssLNG Complex (core part) | Electron microscopy | 3.7 | 2024-05-22 |
| 27 | 8QPB|1|5 | U5 spliceosomal RNA | 5'ss oligo, U5 snRNA, U6 snRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM Structure of Pre-B+ATP Complex (core part) | Electron microscopy | 3.7 | 2024-05-22 |
| 28 | 6ID0|1|B | U5 spliceosomal RNA | U5snRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of a human intron lariat spliceosome prior to Prp43 loaded (ILS1 complex) at 2.9 angstrom resolution | Electron microscopy | 2.9 | 2019-03-13 |
| 29 | 5XJC|1|B | U5 spliceosomal RNA | pre-mRNA, U5 snRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom | Electron microscopy | 3.6 | 2017-07-05 |
| 30 | 8Q7W|1|5 | U5 spliceosomal RNA | U5 snRNA | Homo sapiens | Eukarya | RF00020 | Structure of the recycling U5 snRNP bound to chaperone CD2BP2 (State 3) | Electron microscopy | 3.9 | 2024-04-17 |
| 31 | 6ID1|1|B | U5 spliceosomal RNA | U5snRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of a human intron lariat spliceosome after Prp43 loaded (ILS2 complex) at 2.9 angstrom resolution | Electron microscopy | 2.86 | 2019-03-13 |
| 32 | 6AHD|1|B | U5 spliceosomal RNA | pre-mRNA, U5snRNA | Homo sapiens | Eukarya | RF00020 | The Cryo-EM Structure of Human Pre-catalytic Spliceosome (B complex) at 3.8 angstrom resolution | Electron microscopy | 3.8 | 2018-11-14 |
| 33 | 7ABF|1|5 | U5 spliceosomal RNA | MINX M3 RNA, U5 small nuclear RNA | Homo sapiens | Eukarya | RF00020 | Human pre-Bact-1 spliceosome core structure | Electron microscopy | 3.9 | 2020-12-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well.
| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7QTT|1|e | Structural organization of a late activated human spliceosome (Baqr, core region) | ELECTRON MICROSCOPY | 3.1 | 98 |
| 2 | 8QPB|1|5 | Cryo-EM Structure of Pre-B+ATP Complex (core part) | ELECTRON MICROSCOPY | 3.7 | 79 |
| 3 | 8QOZ|1|5 | Cryo-EM Structure of Pre-B+5'ss+ATPgammaS Complex (core part) | ELECTRON MICROSCOPY | 3.1 | 79 |
| 4 | 8QPE|1|5 | Cryo-EM Structure of Pre-B-like Complex (core part) | ELECTRON MICROSCOPY | 3.1 | 115 |
| 5 | 8QPA|1|5 | Cryo-EM Structure of Pre-B+5'ssLNG Complex (core part) | ELECTRON MICROSCOPY | 3.7 | 79 |
| 6 | 8Q7N|1|5 | cryo-EM structure of the human spliceosomal B complex protomer (tri-snRNP core region) | ELECTRON MICROSCOPY | 3.1 | 115 |
| 7 | 6FF4|1|5 | human Bact spliceosome core structure | ELECTRON MICROSCOPY | 3.4 | 70 |
| 8 | 6ZYM|1|5 | Human C Complex Spliceosome - High-resolution CORE | ELECTRON MICROSCOPY | 3.4 | 74 |
| 9 | 7ABF|1|5 | Human pre-Bact-1 spliceosome core structure | ELECTRON MICROSCOPY | 3.9 | 58 |
| 10 | 8H6L|1|5A | Cryo-EM structure of human exon-defined spliceosome in the early B state. | ELECTRON MICROSCOPY | 2.6 | 115 |
| 11 | 8H6K|1|5A | Cryo-EM structure of human exon-defined spliceosome in the mature B state. | ELECTRON MICROSCOPY | 2.7 | 115 |
| 12 | 6AHD|1|B | The Cryo-EM Structure of Human Pre-catalytic Spliceosome (B complex) at 3.8 angstrom resolution | ELECTRON MICROSCOPY | 3.8 | 115 |
| 13 | 8H6E|1|5A | Cryo-EM structure of human exon-defined spliceosome in the late pre-B state. | ELECTRON MICROSCOPY | 3.2 | 114 |
| 14 | 8H6J|1|5A | Cryo-EM structure of human exon-defined spliceosome in the mature pre-B state. | ELECTRON MICROSCOPY | 3.25 | 114 |
| 15 | 8QP8|1|5 | Cryo-EM Structure of Pre-B Complex (core part) | ELECTRON MICROSCOPY | 3.5 | 71 |
| 16 | 6QW6|1|5 | Structure of the human U5.U4/U6 tri-snRNP at 2.9A resolution. | ELECTRON MICROSCOPY | 2.92 | 104 |
| 17 | 6QX9|1|5 | Structure of a human fully-assembled precatalytic spliceosome (pre-B complex). | ELECTRON MICROSCOPY | 3.28 | 104 |
| 18 | 8Q91|1|5 | Structure of the human 20S U5 snRNP core | ELECTRON MICROSCOPY | 3.1 | 104 |
| 19 | 8RC0|1|5 | Structure of the human 20S U5 snRNP | ELECTRON MICROSCOPY | 3.2 | 104 |
| 20 | 8Q7W|1|5 | Structure of the recycling U5 snRNP bound to chaperone CD2BP2 (State 3) | ELECTRON MICROSCOPY | 3.9 | 104 |
| 21 | 8Q7V|1|5 | Structure of the recycling U5 snRNP bound to chaperones CD2BP2 and TSSC4 (State 1) | ELECTRON MICROSCOPY | 3.8 | 104 |
| 22 | 8Q7Q|1|5 | Structure of the recycling U5 snRNP bound to chaperones CD2BP2 and TSSC4 (State 2) | ELECTRON MICROSCOPY | 3.2 | 104 |
| 23 | 8Y6O|1|B | Cryo-EM Structure of the human minor pre-B complex (pre-precatalytic spliceosome) U11 and tri-snRNP part | ELECTRON MICROSCOPY | 3.38 | 109 |
| 24 | 8C6J|1|5 | Human spliceosomal PM5 C* complex | ELECTRON MICROSCOPY | 2.8 | 113 |
| 25 | 6QDV|1|5 | Human post-catalytic P complex spliceosome | ELECTRON MICROSCOPY | 3.3 | 75 |
| 26 | 7DVQ|1|B | Cryo-EM Structure of the Activated Human Minor Spliceosome (minor Bact Complex) | ELECTRON MICROSCOPY | 2.89 | 90 |
| 27 | 6ICZ|1|B | Cryo-EM structure of a human post-catalytic spliceosome (P complex) at 3.0 angstrom | ELECTRON MICROSCOPY | 3 | 97 |
| 28 | 6ID0|1|B | Cryo-EM structure of a human intron lariat spliceosome prior to Prp43 loaded (ILS1 complex) at 2.9 angstrom resolution | ELECTRON MICROSCOPY | 2.9 | 98 |
| 29 | 6ID1|1|B | Cryo-EM structure of a human intron lariat spliceosome after Prp43 loaded (ILS2 complex) at 2.9 angstrom resolution | ELECTRON MICROSCOPY | 2.86 | 98 |
| 30 | 7W5A|1|B | The cryo-EM structure of human pre-C*-II complex | ELECTRON MICROSCOPY | 3.6 | 84 |
| 31 | 7W59|1|B | The cryo-EM structure of human pre-C*-I complex | ELECTRON MICROSCOPY | 3.6 | 84 |
| 32 | 5XJC|1|B | Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom | ELECTRON MICROSCOPY | 3.6 | 84 |
| 33 | 9FMD|1|5 | Integrative model of the human post-catalytic spliceosome (P-complex) | ELECTRON MICROSCOPY | 3.3 | 92 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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