BGSU RNA Site //

Equivalence class NR_4.0_74023.7 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
16S0X|1|a (rep)Small subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.Electron microscopy2.422019-08-21
25NGM|1|AaSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF001772.9S structure of the 70S ribosome composing the S. aureus 100S complexElectron microscopy2.92017-10-04
37ASP|1|XSmall subunit ribosomal RNA16S rRNAStaphylococcus aureusBacteriaRF00177Staphylococcus aureus 70S after 50 minutes incubation at 37CElectron microscopy2.862021-11-17
47NHL|1|aSmall subunit ribosomal RNA16S rRNA, RNA (5'-R(P*GP*GP*AP*GP*GP*UP*AP*UP*G)-3')Staphylococcus aureus subsp. aureus NCTC 8325BacteriaRF00177VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureusElectron microscopy3.12021-05-05
57NHM|1|aSmall subunit ribosomal RNA16S rRNA, RNA (5'-R(P*GP*GP*AP*GP*GP*UP*NP*NP*NP*NP*NP*NP*AP*UP*G)-3')Staphylococcus aureus subsp. aureus NCTC 8325BacteriaRF0017770S ribosome from Staphylococcus aureusElectron microscopy3.12021-05-05
66YEF|1|aSmall subunit ribosomal RNA16S rRNA, mRNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF0017770S initiation complex with assigned rRNA modifications from Staphylococcus aureusElectron microscopy3.22021-01-27
77ASO|1|XSmall subunit ribosomal RNA16SStaphylococcus aureusBacteriaRF00177Staphylococcus aureus 70S after 30 minutes incubation at 37CElectron microscopy3.112021-11-17
86S13|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).Electron microscopy3.582019-08-21
95ND8|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177Hibernating ribosome from Staphylococcus aureus (Unrotated state)Electron microscopy3.72017-06-28
105ND9|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177Hibernating ribosome from Staphylococcus aureus (Rotated state)Electron microscopy3.72017-06-28
117KWG|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF00177Staphylococcus aureus 30S ribosomal subunit in presence of spermidineElectron microscopy3.752021-01-27
125LI0|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF0017770S ribosome from Staphylococcus aureusElectron microscopy3.82016-12-28
135T7V|1|ASmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)Electron microscopy3.62017-05-31
145TCU|1|ASmall subunit ribosomal RNA16S RRNAStaphylococcus aureusBacteriaRF00177Methicillin sensitive Staphylococcus aureus 70S ribosomeElectron microscopy3.92017-05-24

Release history

Release3.2053.2063.207
Date2021-11-172021-11-242021-12-01

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_74023.7NR_4.0_74023.63.205(12) 5TCU|1|A, 5T7V|1|A, 5NGM|1|Aa, 5ND9|1|a, 5ND8|1|a, 5LI0|1|a, 7NHM|1|a, 7NHL|1|a, 7KWG|1|a, 6YEF|1|a, 6S13|1|a, 6S0X|1|a(2) 7ASO|1|X, 7ASP|1|X(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_74023.7NR_4.0_74023.83.208(14) 6S13|1|a, 6S0X|1|a, 7NHM|1|a, 5TCU|1|A, 7NHL|1|a, 5T7V|1|A, 7KWG|1|a, 5NGM|1|Aa, 7ASP|1|X, 5ND9|1|a, 7ASO|1|X, 5ND8|1|a, 5LI0|1|a, 6YEF|1|a(0) (2) 7BGE|1|a, 7BGD|1|a

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16S13|1|aErythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).ELECTRON MICROSCOPY3.581539
26S0X|1|aErythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.ELECTRON MICROSCOPY2.421539
35NGM|1|Aa2.9S structure of the 70S ribosome composing the S. aureus 100S complexELECTRON MICROSCOPY2.91539
45ND9|1|aHibernating ribosome from Staphylococcus aureus (Rotated state)ELECTRON MICROSCOPY3.71541
57KWG|1|aStaphylococcus aureus 30S ribosomal subunit in presence of spermidineELECTRON MICROSCOPY3.751552
67NHL|1|aVgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.11538
77NHM|1|a70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.11531
85LI0|1|a70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.81547
95ND8|1|aHibernating ribosome from Staphylococcus aureus (Unrotated state)ELECTRON MICROSCOPY3.71542
106YEF|1|a70S initiation complex with assigned rRNA modifications from Staphylococcus aureusELECTRON MICROSCOPY3.21540
115TCU|1|AMethicillin sensitive Staphylococcus aureus 70S ribosomeELECTRON MICROSCOPY3.91464
125T7V|1|AMethicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)ELECTRON MICROSCOPY3.61419
137ASO|1|XStaphylococcus aureus 70S after 30 minutes incubation at 37CELECTRON MICROSCOPY3.111415
147ASP|1|XStaphylococcus aureus 70S after 50 minutes incubation at 37CELECTRON MICROSCOPY2.861447
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