#IFECompound(s)RNA source organismTitleMethodResolutionDate
13PF5|1|R (rep)hexaribouracil (rU6)Crystal structure of Bs-CspB in complex with rU6X-RAY DIFFRACTION1.682011-09-21
23PEW|1|BRNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')S. cerevisiae Dbp5 L327V bound to RNA and ADP BeF3X-RAY DIFFRACTION1.52011-03-23
33PEY|1|BRNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')S. cerevisiae Dbp5 bound to RNA and ADP BeF3X-RAY DIFFRACTION1.42011-03-23
44ALP|1|EHEXA URIDINEsynthetic constructThe Lin28b Cold shock domain in complex with hexauridineX-RAY DIFFRACTION1.482012-09-05
52HYI|1|F5'-R(*UP*UP*UP*UP*UP*U)-3'Structure of the human exon junction complex with a trapped DEAD-box helicase bound to RNAX-RAY DIFFRACTION2.32006-08-15
63EX7|1|FRNA (5'-R(*UP*UP*UP*UP*UP*U)-3')The crystal structure of EJC in its transition stateX-RAY DIFFRACTION2.32008-12-09
73EX7|1|JRNA (5'-R(*UP*UP*UP*UP*UP*U)-3')The crystal structure of EJC in its transition stateX-RAY DIFFRACTION2.32008-12-09
82HYI|1|L5'-R(*UP*UP*UP*UP*UP*U)-3'Structure of the human exon junction complex with a trapped DEAD-box helicase bound to RNAX-RAY DIFFRACTION2.32006-08-15
94NL3|1|R5'-R(*UP*UP*UP*UP*UP*U)-3'Crystal Structure of Listeria monocytogenes Hfq in complex with U6 RNAX-RAY DIFFRACTION3.12014-09-10
104NL3|1|Z5'-R(*UP*UP*UP*UP*UP*U)-3'Crystal Structure of Listeria monocytogenes Hfq in complex with U6 RNAX-RAY DIFFRACTION3.12014-09-10
113O8R|1|CRNA (5'-R(P*UP*(5BU)P*UP*UP*UP*U)-3')Visualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCVX-RAY DIFFRACTION2.32011-01-05
123O8C|1|CRNA (5'-R(P*UP*(5BU)P*UP*UP*UP*U)-3')Visualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCVX-RAY DIFFRACTION22011-01-05
135BTE|1|CRNA (5'-R(P*UP*(U37)P*(U37)P*UP*UP*U)-3')Homo sapiensCrystal structure of Ashbya gossypii Rai1 in complex with pU(S)6-Mn2+X-RAY DIFFRACTION2.42015-07-22
145BTE|1|DRNA (5'-R(P*UP*(U37)P*(U37)P*UP*UP*U)-3')Homo sapiensCrystal structure of Ashbya gossypii Rai1 in complex with pU(S)6-Mn2+X-RAY DIFFRACTION2.42015-07-22
151N34|1|ZA-SITE MESSENGER RNA FRAGMENTThermus thermophilusStructure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon positionX-RAY DIFFRACTION3.82002-11-29
163PF5|1|Shexaribouracil (rU6)Crystal structure of Bs-CspB in complex with rU6X-RAY DIFFRACTION1.682011-09-21

Release history

Release2.462.472.482.492.502.512.522.532.542.552.562.572.582.592.602.612.622.63
Date2015-10-232015-10-302015-11-062015-11-132015-11-202015-11-272015-12-042015-12-112015-12-182015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-19

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_74924.1NR_all_04871.12.46(6) 2HYI|1|L, 3PEW|1|B, 2HYI|1|F, 3EX7|1|J, 3EX7|1|F, 3PEY|1|B(10) 3PF5|1|S, 4NL3|1|R, 3PF5|1|R, 4ALP|1|E, 3O8R|1|C, 3O8C|1|C, 1N34|1|Z, 5BTE|1|D, 5BTE|1|C, 4NL3|1|Z(0)
NR_4.0_74924.1NR_all_18444.12.46(2) 4NL3|1|Z, 4NL3|1|R(14) 3EX7|1|J, 3EX7|1|F, 2HYI|1|L, 2HYI|1|F, 1N34|1|Z, 5BTE|1|D, 5BTE|1|C, 4ALP|1|E, 3PF5|1|S, 3PF5|1|R, 3PEY|1|B, 3PEW|1|B, 3O8R|1|C, 3O8C|1|C(0)
NR_4.0_74924.1NR_all_18746.12.46(1) 4ALP|1|E(15) 5BTE|1|D, 5BTE|1|C, 4NL3|1|Z, 4NL3|1|R, 3PF5|1|S, 3PF5|1|R, 3PEY|1|B, 3PEW|1|B, 3O8R|1|C, 3O8C|1|C, 3EX7|1|J, 3EX7|1|F, 2HYI|1|L, 2HYI|1|F, 1N34|1|Z(0)
NR_4.0_74924.1NR_all_19137.12.46(1) 3PF5|1|R(15) 3PEW|1|B, 3O8R|1|C, 3O8C|1|C, 3EX7|1|J, 3EX7|1|F, 2HYI|1|L, 2HYI|1|F, 1N34|1|Z, 5BTE|1|D, 5BTE|1|C, 4NL3|1|Z, 4NL3|1|R, 4ALP|1|E, 3PF5|1|S, 3PEY|1|B(0)
NR_4.0_74924.1NR_all_29388.12.46(1) 3O8R|1|C(15) 5BTE|1|D, 5BTE|1|C, 4NL3|1|Z, 4NL3|1|R, 4ALP|1|E, 3PF5|1|S, 3PF5|1|R, 3PEY|1|B, 3PEW|1|B, 3O8C|1|C, 3EX7|1|J, 3EX7|1|F, 2HYI|1|L, 2HYI|1|F, 1N34|1|Z(0)
NR_4.0_74924.1NR_all_43373.12.46(2) 5BTE|1|C, 5BTE|1|D(14) 3PF5|1|R, 3PEY|1|B, 3PEW|1|B, 3O8R|1|C, 3O8C|1|C, 3EX7|1|J, 3EX7|1|F, 2HYI|1|L, 2HYI|1|F, 1N34|1|Z, 4NL3|1|Z, 4NL3|1|R, 4ALP|1|E, 3PF5|1|S(0)
NR_4.0_74924.1NR_all_55158.12.46(1) 3PF5|1|S(15) 5BTE|1|D, 5BTE|1|C, 3O8R|1|C, 4NL3|1|Z, 3O8C|1|C, 4NL3|1|R, 3EX7|1|J, 4ALP|1|E, 3EX7|1|F, 3PF5|1|R, 2HYI|1|L, 3PEY|1|B, 2HYI|1|F, 3PEW|1|B, 1N34|1|Z(0)
NR_4.0_74924.1NR_all_57041.12.46(1) 1N34|1|Z(15) 3O8C|1|C, 3EX7|1|J, 3EX7|1|F, 2HYI|1|L, 2HYI|1|F, 5BTE|1|D, 5BTE|1|C, 4NL3|1|Z, 4NL3|1|R, 4ALP|1|E, 3PF5|1|S, 3PF5|1|R, 3PEY|1|B, 3PEW|1|B, 3O8R|1|C(0)
NR_4.0_74924.1NR_all_99214.12.46(1) 3O8C|1|C(15) 5BTE|1|D, 5BTE|1|C, 4NL3|1|Z, 4NL3|1|R, 4ALP|1|E, 3PF5|1|S, 3PF5|1|R, 3PEY|1|B, 3PEW|1|B, 3O8R|1|C, 3EX7|1|J, 3EX7|1|F, 2HYI|1|L, 2HYI|1|F, 1N34|1|Z(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
13O8R|1|CVisualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCVX-RAY DIFFRACTION2.35
23O8C|1|CVisualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCVX-RAY DIFFRACTION25
33PF5|1|SCrystal structure of Bs-CspB in complex with rU6X-RAY DIFFRACTION1.681
42HYI|1|FStructure of the human exon junction complex with a trapped DEAD-box helicase bound to RNAX-RAY DIFFRACTION2.36
52HYI|1|LStructure of the human exon junction complex with a trapped DEAD-box helicase bound to RNAX-RAY DIFFRACTION2.36
63PEW|1|BS. cerevisiae Dbp5 L327V bound to RNA and ADP BeF3X-RAY DIFFRACTION1.56
73PEY|1|BS. cerevisiae Dbp5 bound to RNA and ADP BeF3X-RAY DIFFRACTION1.46
83EX7|1|FThe crystal structure of EJC in its transition stateX-RAY DIFFRACTION2.36
93EX7|1|JThe crystal structure of EJC in its transition stateX-RAY DIFFRACTION2.36
101N34|1|ZStructure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon positionX-RAY DIFFRACTION3.84
115BTE|1|CCrystal structure of Ashbya gossypii Rai1 in complex with pU(S)6-Mn2+X-RAY DIFFRACTION2.44
125BTE|1|DCrystal structure of Ashbya gossypii Rai1 in complex with pU(S)6-Mn2+X-RAY DIFFRACTION2.44
133PF5|1|RCrystal structure of Bs-CspB in complex with rU6X-RAY DIFFRACTION1.689
144NL3|1|ZCrystal Structure of Listeria monocytogenes Hfq in complex with U6 RNAX-RAY DIFFRACTION3.16
154NL3|1|RCrystal Structure of Listeria monocytogenes Hfq in complex with U6 RNAX-RAY DIFFRACTION3.16
164ALP|1|EThe Lin28b Cold shock domain in complex with hexauridineX-RAY DIFFRACTION1.486