#PDBTitleRNA source organismCompoundsMethodResolutionDate
11A34|B (rep)SATELLITE TOBACCO MOSAIC VIRUS/RNA COMPLEXPROTEIN (SATELLITE TOBACCO MOSAIC VIRUS), RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')X-RAY DIFFRACTION1.811998-04-29
21EFO|BCRYSTAL STRUCTURE OF AN ADENINE BULGE IN THE RNA CHAIN OF A DNA/RNA HYBRID, D(CTCCTCTTC)/R(GAAGAGAGAG)DNA (5'-D(*CP*TP*CP*CP*TP*CP*TP*TP*C)-3'), RNA (5'-R(*GP*AP*AP*GP*AP*GP*AP*GP*AP*G)-3')X-RAY DIFFRACTION2.32000-05-29
31G4Q|ARNA/DNA HYBRID DECAMER OF CAAAGAAAAG/CTTTTCTTTG5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3', 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3'X-RAY DIFFRACTION1.152003-07-08
41JB8|AThe Crystal Structure of an RNA/DNA Hybrid Reveals Novel Intermolecular Intercalation5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3', 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3'X-RAY DIFFRACTION2.382003-07-01
51OO7|ADNA.RNA HYBRID DUPLEX CONTAINING A 5-PROPYNE DNA STRAND AND PURINE-RICH RNA STRAND, NMR, 4 STRUCTURES5'-R(*GP*AP*AP*GP*AP*GP*AP*AP*GP*C)-3', 5'-D(*GP*(5PC)P*(PDU)P*(PDU)P*(5PC)P*(PDU)P*(5PC)P*(PDU)P*(PDU)P*C)-3'SOLUTION NMR2003-11-11
61PJG|ARNA/DNA Hybrid Decamer of CAAAGAAAAG/CTTTTCTTTG5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3', 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3'X-RAY DIFFRACTION1.152003-12-09
71PJO|ACrystal Structure of an RNA/DNA hybrid of HIV-1 PPT5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3', 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3'X-RAY DIFFRACTION1.12003-12-09
81R9S|RRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MATCHED NUCLEOTIDEDNA-directed RNA polymerase II largest subunit, DNA-directed RNA polymerase II 140 kDa polypeptide, DNA-directed RNA polymerase II 45 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide, DNA-directed RNA polymerase II 14.2 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide, DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide, RNA strand, DNA strandX-RAY DIFFRACTION4.252004-11-16
91R9T|RRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDEDNA-directed RNA polymerase II largest subunit, DNA-directed RNA polymerase II 140 kDa polypeptide, DNA-directed RNA polymerase II 45 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide, DNA-directed RNA polymerase II 14.2 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide, DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide, DNA nontemplate strand, RNA strand, DNA template strandX-RAY DIFFRACTION3.52004-11-16
101RRD|ADNA/RNA HYBRID DUPLEX CONTAINING A PURINE-RICH RNA STRAND, NMR, 10 STRUCTURESRNA (5'-R(*GP*AP*AP*GP*AP*GP*AP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*TP*CP*TP*CP*TP*TP*C)-3')SOLUTION NMR1998-04-22
111RRR|ARNA DUPLEX CONTAINING A PURINE-RICH STRAND, NMR, 10 STRUCTURESRNA (5'-R(*GP*AP*AP*GP*AP*GP*AP*AP*GP*C)-3'), RNA (5'-R(*GP*CP*UP*UP*CP*UP*CP*UP*UP*C)-3')SOLUTION NMR1998-04-22
121SFO|RRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEXDNA-directed RNA polymerase II largest subunit, DNA-directed RNA polymerase II 140 kDa polypeptide, DNA-directed RNA polymerase II 45 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide, DNA-directed RNA polymerase II 14.2 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide, DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide, RNA STRAND, DNA STRANDX-RAY DIFFRACTION3.612004-03-02
131Y1W|PComplete RNA Polymerase II elongation complexDNA-directed RNA polymerase II largest subunit, DNA-directed RNA polymerase II 140 kDa polypeptide, DNA-directed RNA polymerase II 45 kDa polypeptide, DNA-directed RNA polymerase II 32 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide, DNA-directed RNA polymerase II 19 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide, DNA-directed RNA polymerase II subunit 9, DNA-directed RNA polymerases I/II/III subunit 10, DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide, 5'-D(*AP*AP*GP*TP*AP*CP*T)-3', 5'-R(*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3', 5'-D(P*AP*GP*TP*AP*CP*TP*TP*AP*CP*GP*CP*CP*TP*GP*GP*TP*CP*AP*T)-3'X-RAY DIFFRACTION42005-01-04
141Y77|PComplete RNA Polymerase II elongation complex with substrate analogue GMPCPPDNA-directed RNA polymerase II largest subunit, DNA-directed RNA polymerase II 140 kDa polypeptide, DNA-directed RNA polymerase II 45 kDa polypeptide, DNA-directed RNA polymerase II 32 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide, DNA-directed RNA polymerase II 19 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide, DNA-directed RNA polymerase II subunit 9, DNA-directed RNA polymerases I/II/III subunit 10, DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide, 5'-D(*AP*AP*GP*TP*AP*CP*T)-3', 5'-R(*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3', 5'-D(P*AP*GP*TP*AP*CP*TP*TP*AP*CP*T*CP*GP*CP*CP*TP*GP*GP*TP*CP*TP*G)-3'X-RAY DIFFRACTION4.52005-01-04
152E2H|RRNA polymerase II elongation complex at 5 mM Mg2+ with GTPDNA-directed RNA polymerase II largest subunit, DNA-directed RNA polymerase II 140 kDa polypeptide, DNA-directed RNA polymerase II 45 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide, DNA-directed RNA polymerase II subunit 9, DNA-directed RNA polymerases I/II/III subunit 10, DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide, 5'-D(*CP*TP*GP*CP*TP*TP*AP*TP*CP*GP*GP*TP*AP*G)-3', 5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3', 28-MER DNA template strandX-RAY DIFFRACTION3.952006-12-12
162E2I|RRNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dGTPDNA-directed RNA polymerase II largest subunit, DNA-directed RNA polymerase II 140 kDa polypeptide, DNA-directed RNA polymerase II 45 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide, DNA-directed RNA polymerase II subunit 9, DNA-directed RNA polymerases I/II/III subunit 10, DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide, 5'-D(*CP*TP*GP*CP*TP*TP*AP*TP*CP*GP*GP*TP*AP*G)-3', 5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3', 28-MER DNA template strandX-RAY DIFFRACTION3.412006-12-19
172JA5|PCPD lesion containing RNA Polymerase II elongation complex Asynthetic constructDNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerase II subunit RPB4, DNA-directed RNA polymerases I, II, and III subunit RPABC1, DNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerase II subunit RPB7, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerases I, II, and III subunit RPABC4, 5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP *AP*GP*CP*T)-3', 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3', 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP *CP*TP*TTP*TP*TP*CP*CP*BRUP*GP*GP*TP*CP*AP*TP*T)-3'X-RAY DIFFRACTION3.82007-02-20
182JA6|PCPD lesion containing RNA Polymerase II elongation complex BDNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT, DNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASE II 45KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASE II 32KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASE II 19KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9, DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10, DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE, 5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP *AP*GP*CP*T)-3', 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3', 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP *CP*TP*TP*TTP*TP*CP*CP*BRUP*GP*GP*TP*CP*AP*TP*T)-3'X-RAY DIFFRACTION42007-02-20
192JA7|3CPD lesion containing RNA Polymerase II elongation complex Csynthetic construct5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP *AP*GP*CP*T)-3', 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP *CP*TP*TP*TP*TTP*CP*CP*BRUP*GP*GP*TP*CP*AP*TP*T)-3', 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3', 5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP *AP*GP*CP*T)-3', 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP *CP*TP*TP*TP*TTP*CP*CP*BRUP*GP*GP*TP*CP*AP*TP*T)-3', 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3', DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT, DNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASE II 45KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASE II 32KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASE II 19KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9, DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10, DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDEX-RAY DIFFRACTION3.82007-02-20
202JA8|PCPD lesion containing RNA Polymerase II elongation complex Dsynthetic constructDNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT, DNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASE II 45KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASE II 32KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASE II 19KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9, DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10, DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE, 5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP *AP*GP*CP*T)-3', 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*AP*UP)-3', 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP *CP*TP*TP*TP*TP*TTP*CP*BRUP*GP*GP*TP*CP*AP*TP*T)-3'X-RAY DIFFRACTION3.82007-02-20
212NVQ|RRNA Polymerase II Elongation Complex in 150 mM Mg+2 with 2'dUTPsynthetic constructDNA-directed RNA polymerase II largest subunit, DNA-directed RNA polymerase II 140 kDa polypeptide, DNA-directed RNA polymerase II 45 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide, DNA-directed RNA polymerase II subunit 9, DNA-directed RNA polymerases I/II/III subunit 10, DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide, 5'-D(*CP*TP*GP*CP*TP*TP*AP*TP*CP*GP*GP*TP*AP*G)-3', 5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3', 28-MER DNA template strandX-RAY DIFFRACTION2.92006-12-12
222NVT|RRNA Polymerase II Elongation Complex in 150 mM Mg+2 with GMPCPPDNA-directed RNA polymerase II largest subunit, DNA-directed RNA polymerase II 140 kDa polypeptide, DNA-directed RNA polymerase II 45 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide, DNA-directed RNA polymerase II subunit 9, DNA-directed RNA polymerases I/II/III subunit 10, DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide, 5'-D(*GP*TP*AP*CP*TP*TP*G)-3', 5'-R(*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3', 5'-D(P*CP*AP*AP*GP*TP*AP*CP*TP*TP*AP*CP*GP*CP*CP*TP*GP*GP*TP*CP*TP*T)-3'X-RAY DIFFRACTION3.362006-12-12
232NVX|RRNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dUTPDNA-directed RNA polymerase II largest subunit, DNA-directed RNA polymerase II 140 kDa polypeptide, DNA-directed RNA polymerase II 45 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide, DNA-directed RNA polymerase II subunit 9, DNA-directed RNA polymerases I/II/III subunit 10, DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide, 5'-D(*CP*TP*GP*CP*TP*TP*AP*TP*CP*GP*GP*TP*AP*G)-3', 5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3', 28-MER DNA template strandX-RAY DIFFRACTION3.62006-12-19
242NVZ|RRNA Polymerase II elongation complex with UTP, updated 11/2006DNA-directed RNA polymerase II largest subunit, DNA-directed RNA polymerase II 140 kDa polypeptide, DNA-directed RNA polymerase II 45 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide, DNA-directed RNA polymerase II subunit 9, DNA-directed RNA polymerases I/II/III subunit 10, DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide, 5'-D(*CP*TP*GP*CP*TP*TP*AP*TP*CP*GP*GP*TP*AP*G)-3', 5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3', 28-MER DNA template strandX-RAY DIFFRACTION4.32006-12-19
252R7Z|PCisplatin lesion containing RNA polymerase II elongation complexDNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerase II subunit RPB4, DNA-directed RNA polymerases I, II, and III subunit RPABC1, DNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerase II subunit RPB7, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerases I, II, and III subunit RPABC4, 5'-D(*CP*AP*AP*GP*TP*AP*G)-3', 5'-R(*UP*UP*UP*GP*AP*GP*GP*AP*GP*G)-3', 5'-D(*TP*AP*CP*TP*TP*GUP*CP*CP*CP*TP*CP*CP*TP*CP*AP*T)-3'X-RAY DIFFRACTION3.82007-11-20
262VUM|PAlpha-amanitin inhibited complete RNA polymerase II elongation complexDNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4, AMATOXIN, 5'-D(*AP*AP*AP*CP*TP*AP*CP*TP*TP*GP *AP*GP*CP*T)-3', 5'-R(*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3', 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP *GP*TP*TP*AP*CP*GP*CP*CP*BRUP*GP*GP*TP*CP*AP*TP*T)-3'X-RAY DIFFRACTION3.42008-06-17
272YU9|RRNA polymerase II elongation complex in 150 mm MG+2 with UTPDNA-directed RNA polymerase II largest subunit, DNA-directed RNA polymerase II 140 kDa polypeptide, DNA-directed RNA polymerase II 45 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide, DNA-directed RNA polymerase II subunit 9, DNA-directed RNA polymerases I/II/III subunit 10, DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide, 5'-D(*CP*TP*GP*CP*TP*TP*AP*TP*CP*GP*GP*TP*AP*G)-3', 5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3', 28-MER DNA template strandX-RAY DIFFRACTION3.42007-04-24
283HOV|PComplete RNA polymerase II elongation complex IIDNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerase II subunit RPB4, DNA-directed RNA polymerases I, II, and III subunit RPABC1, DNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerase II subunit RPB7, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerases I, II, and III subunit RPABC4, 5'-D(*T*AP*CP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3', 5'-R(*UP*GP*CP*AP*UP*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*CP*A)-3', 5'-D(*AP*GP*CP*TP*CP*AP*A*GP*TP*AP*GP*TP*TP*AP*TP*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*T)-3'X-RAY DIFFRACTION3.52009-07-28
293HOX|PComplete RNA polymerase II elongation complex VDNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerase II subunit RPB4, DNA-directed RNA polymerases I, II, and III subunit RPABC1, DNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerase II subunit RPB7, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerases I, II, and III subunit RPABC4, 5'-D(*AP*CP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3', 5'-R(*UP*GP*CP*AP*UP*UP*U*CP*AP*AP*CP*CP*AP*GP*GP*CP*UP*U)-3', 5'-D(*AP*GP*CP*TP*C*AP*AP*GP*TP*AP*GP*TP*TP*AP*AP*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*T)-3'X-RAY DIFFRACTION3.652009-07-28
303HOY|PComplete RNA polymerase II elongation complex VIDNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerase II subunit RPB4, DNA-directed RNA polymerases I, II, and III subunit RPABC1, DNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerase II subunit RPB7, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerases I, II, and III subunit RPABC4, 5'-D(*CP*CP*GP*GP*CP*AP*GP*TP*AP*CP*TP*AP*GP*TP*AP*AP*AP*CP*TP*AP*GP*TP*AP*TP*T*GP*AP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*TP*T)-3', 5'-R(*UP*AP*UP*AP*UP*GP*CP*A*UP*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*A)-3', 5'-D(*CP*CP*AP*AP*GP*CP*TP*CP*AP*AP*G*TP*AP*CP*TP*TP*AP*CP*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*TP*AP*CP*TP*AP*GP*TP*AP*CP*TP*GP*CP*C)-3'X-RAY DIFFRACTION3.42009-07-28
313I4M|P8-oxoguanine containing RNA polymerase II elongation complex DDNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerase II subunit RPB4, DNA-directed RNA polymerases I, II, and III subunit RPABC1, DNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerase II subunit RPB7, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerases I, II, and III subunit RPABC4, DNA (5'-D(*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3'), RNA (5'-R(*UP*GP*CP*AP*UP*C*UP*UP*CP*CP*AP*GP*GP*CP*CP*U)-3'), DNA (5'-D(*AP*G*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*AP*(8OG)P*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*T)-3')X-RAY DIFFRACTION3.72009-09-08
323I4N|P8-oxoguanine containing RNA polymerase II elongation complex EDNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerase II subunit RPB4, DNA-directed RNA polymerases I, II, and III subunit RPABC1, DNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerase II subunit RPB7, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerases I, II, and III subunit RPABC4, DNA (5'-D(*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3'), RNA (5'-R(*UP*GP*CP*AP*UP*C*UP*UP*CP*CP*AP*GP*GP*CP*AP*U)-3'), DNA (5'-D(*AP*G*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*AP*(8OG)P*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*T)-3')X-RAY DIFFRACTION3.92009-09-08
333M4O|RRNA polymerase II elongation complex BDNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerases I, II, and III subunit RPABC1, DNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerases I, II, and III subunit RPABC4, DNA (5'-D(P*GP*TP*GP*GP*TP*TP*AP*TP*GP*GP*GP*TP*AP*G)-3'), RNA (5'-R(*AP*UP*GP*GP*AP*GP*AP*GP*GP*A)-3'), DNA (28-MER)X-RAY DIFFRACTION3.572010-05-12
34404D|ACRYSTAL STRUCTURE OF THE RNA/DNA HYBRID R(GAAGAGAAGC). D(GCTTCTCTTC)5'-R(*GP*AP*AP*GP*AP*GP*AP*AP*GP*C)-3', 5'-D(*GP*CP*TP*TP*CP*TP*CP*TP*TP*C)-3'X-RAY DIFFRACTION2.51998-12-14
354BY1|Pelongating RNA Polymerase II-Bye1 TLD complex soaked with AMPCPPsynthetic constructDNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4, 5'-D(*AP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*TP)-3', 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3', 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*AP *TP*TP*CP*CP*BRUP*GP*GP*TP*CP*AP*AP*T)-3', TRANSCRIPTION FACTOR BYE1X-RAY DIFFRACTION3.62013-09-11
364BY7|Pelongating RNA Polymerase II-Bye1 TLD complexsynthetic constructDNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4, , 5'-D(*DAP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*DTP)-3', 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3', 5'-D(*DAP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*DAP *TP*TP*CP*CP*BP*GP*GP*TP*CP*AP*TP*T)-3', TRANSCRIPTION FACTOR BYE1X-RAY DIFFRACTION3.152013-09-11

Release history

Release1.281.291.301.311.321.331.341.351.361.371.381.391.401.411.421.431.441.451.461.471.481.491.501.511.521.531.541.551.561.571.581.591.601.611.621.631.641.651.661.671.681.691.701.711.721.731.741.751.76
Date2013-09-142013-09-212013-09-282013-10-052013-10-122013-10-192013-10-262013-11-092013-11-162013-11-232013-11-302013-12-072013-12-142013-12-212013-12-282014-01-042014-01-112014-01-182014-01-252014-02-012014-02-082014-02-152014-02-222014-03-012014-03-082014-03-172014-03-222014-03-292014-04-052014-04-122014-04-192014-04-262014-05-032014-05-102014-05-172014-05-312014-06-072014-06-132014-06-202014-06-272014-07-042014-07-182014-07-252014-08-012014-08-082014-08-152014-08-222014-08-292014-09-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This classDescendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
12NVT|RRNA Polymerase II Elongation Complex in 150 mM Mg+2 with GMPCPPX-RAY DIFFRACTION3.3610
21EFO|BCRYSTAL STRUCTURE OF AN ADENINE BULGE IN THE RNA CHAIN OF A DNA/RNA HYBRID, D(CTCCTCTTC)/R(GAAGAGAGAG)X-RAY DIFFRACTION2.310
32JA8|PCPD lesion containing RNA Polymerase II elongation complex DX-RAY DIFFRACTION3.811
44BY7|Pelongating RNA Polymerase II-Bye1 TLD complexX-RAY DIFFRACTION3.1511
54BY1|Pelongating RNA Polymerase II-Bye1 TLD complex soaked with AMPCPPX-RAY DIFFRACTION3.611
63HOY|PComplete RNA polymerase II elongation complex VIX-RAY DIFFRACTION3.420
73HOV|PComplete RNA polymerase II elongation complex IIX-RAY DIFFRACTION3.517
83I4M|P8-oxoguanine containing RNA polymerase II elongation complex DX-RAY DIFFRACTION3.716
91OO7|ADNA.RNA HYBRID DUPLEX CONTAINING A 5-PROPYNE DNA STRAND AND PURINE-RICH RNA STRAND, NMR, 4 STRUCTURESSOLUTION NMR10
101RRD|ADNA/RNA HYBRID DUPLEX CONTAINING A PURINE-RICH RNA STRAND, NMR, 10 STRUCTURESSOLUTION NMR10
111RRR|ARNA DUPLEX CONTAINING A PURINE-RICH STRAND, NMR, 10 STRUCTURESSOLUTION NMR10
123I4N|P8-oxoguanine containing RNA polymerase II elongation complex EX-RAY DIFFRACTION3.916
132R7Z|PCisplatin lesion containing RNA polymerase II elongation complexX-RAY DIFFRACTION3.810
142VUM|PAlpha-amanitin inhibited complete RNA polymerase II elongation complexX-RAY DIFFRACTION3.411
151PJG|ARNA/DNA Hybrid Decamer of CAAAGAAAAG/CTTTTCTTTGX-RAY DIFFRACTION1.1510
161G4Q|ARNA/DNA HYBRID DECAMER OF CAAAGAAAAG/CTTTTCTTTGX-RAY DIFFRACTION1.1510
171PJO|ACrystal Structure of an RNA/DNA hybrid of HIV-1 PPTX-RAY DIFFRACTION1.110
181R9S|RRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MATCHED NUCLEOTIDEX-RAY DIFFRACTION4.2510
191R9T|RRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDEX-RAY DIFFRACTION3.510
201SFO|RRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEXX-RAY DIFFRACTION3.6110
212JA6|PCPD lesion containing RNA Polymerase II elongation complex BX-RAY DIFFRACTION411
222NVQ|RRNA Polymerase II Elongation Complex in 150 mM Mg+2 with 2'dUTPX-RAY DIFFRACTION2.910
232E2I|RRNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dGTPX-RAY DIFFRACTION3.4110
242YU9|RRNA polymerase II elongation complex in 150 mm MG+2 with UTPX-RAY DIFFRACTION3.410
252NVX|RRNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dUTPX-RAY DIFFRACTION3.610
262E2H|RRNA polymerase II elongation complex at 5 mM Mg2+ with GTPX-RAY DIFFRACTION3.9510
272NVZ|RRNA Polymerase II elongation complex with UTP, updated 11/2006X-RAY DIFFRACTION4.310
281Y1W|PComplete RNA Polymerase II elongation complexX-RAY DIFFRACTION410
291Y77|PComplete RNA Polymerase II elongation complex with substrate analogue GMPCPPX-RAY DIFFRACTION4.510
302JA5|PCPD lesion containing RNA Polymerase II elongation complex AX-RAY DIFFRACTION3.811
312JA7|3CPD lesion containing RNA Polymerase II elongation complex CX-RAY DIFFRACTION3.811
321A34|BSATELLITE TOBACCO MOSAIC VIRUS/RNA COMPLEXX-RAY DIFFRACTION1.8110
333M4O|RRNA polymerase II elongation complex BX-RAY DIFFRACTION3.5710
343HOX|PComplete RNA polymerase II elongation complex VX-RAY DIFFRACTION3.6518
35404D|ACRYSTAL STRUCTURE OF THE RNA/DNA HYBRID R(GAAGAGAAGC). D(GCTTCTCTTC)X-RAY DIFFRACTION2.510
361JB8|AThe Crystal Structure of an RNA/DNA Hybrid Reveals Novel Intermolecular IntercalationX-RAY DIFFRACTION2.3810