Equivalence class NR_4.0_79777.2 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8QBL|1|b (rep) | Retron-Eco1-msr, Retron-Eco1-A2 | Escherichia coli BL21(DE3) | Retron-Eco1 filament with inactive effector (E106A, 2 segments) | Electron microscopy | 2.66 | 2024-06-05 | |||
| 2 | 7XJG|1|H+ 7XJG|1|I | RNA (81-MER), RNA (14-MER) | Escherichia coli | Cryo-EM structure of E.coli retron-Ec86 in complex with its effector at 2.5 angstrom | Electron microscopy | 2.51 | 2022-09-14 | |||
| 3 | 7XJG|1|E+ 7XJG|1|F | RNA (81-MER), RNA (14-MER) | Escherichia coli | Cryo-EM structure of E.coli retron-Ec86 in complex with its effector at 2.5 angstrom | Electron microscopy | 2.51 | 2022-09-14 | |||
| 4 | 8QBL|1|C | Retron-Eco1-msr, Retron-Eco1-A2 | Escherichia coli BL21(DE3) | Retron-Eco1 filament with inactive effector (E106A, 2 segments) | Electron microscopy | 2.66 | 2024-06-05 | |||
| 5 | 8QBL|1|R | Retron-Eco1-msr, Retron-Eco1-A2 | Escherichia coli BL21(DE3) | Retron-Eco1 filament with inactive effector (E106A, 2 segments) | Electron microscopy | 2.66 | 2024-06-05 | |||
| 6 | 8QBL|1|W | Retron-Eco1-msr, Retron-Eco1-A2 | Escherichia coli BL21(DE3) | Retron-Eco1 filament with inactive effector (E106A, 2 segments) | Electron microscopy | 2.66 | 2024-06-05 | |||
| 7 | 8QBL|1|M | Retron-Eco1-msr, Retron-Eco1-A2 | Escherichia coli BL21(DE3) | Retron-Eco1 filament with inactive effector (E106A, 2 segments) | Electron microscopy | 2.66 | 2024-06-05 | |||
| 8 | 7V9X|1|H+ 7V9X|1|I | RNA (81-MER), RNA (14-MER) | Escherichia coli | Cryo-EM structure of E.coli retron-Ec86 in complex with its effector at 2.8 angstrom | Electron microscopy | 2.82 | 2022-08-31 | |||
| 9 | 8QBM|1|b | Retron-Eco1-msr, Retron-Eco1-A2 | Escherichia coli BL21(DE3) | Retron-Eco1 filament with ADP-ribosylated Effector (full map with 2 segments) | Electron microscopy | 3.09 | 2024-06-05 | |||
| 10 | 7V9X|1|E+ 7V9X|1|F | RNA (81-MER), RNA (14-MER) | Escherichia coli | Cryo-EM structure of E.coli retron-Ec86 in complex with its effector at 2.8 angstrom | Electron microscopy | 2.82 | 2022-08-31 | |||
| 11 | 8QBK|1|W | Retron-Eco1-msr, Retron-Eco1-A2 | Escherichia coli BL21(DE3) | Retron-Eco1 filament with ADP-ribosylated Effector (local map with 1 segment) | Electron microscopy | 2.99 | 2024-06-05 | |||
| 12 | 8QBL|1|O | Retron-Eco1-msr, Retron-Eco1-A2 | Escherichia coli BL21(DE3) | Retron-Eco1 filament with inactive effector (E106A, 2 segments) | Electron microscopy | 2.66 | 2024-06-05 | |||
| 13 | 7V9U|1|E+ 7V9U|1|F | RNA (81-MER), RNA (5'-R(P*CP*GP*UP*AP*AP*GP*GP*G)-3') | Escherichia coli | Cryo-EM structure of E.coli retron-Ec86 (RT-msDNA-RNA) at 3.2 angstrom | Electron microscopy | 3.12 | 2022-08-31 | |||
| 14 | 8QBM|1|M | Retron-Eco1-msr, Retron-Eco1-A2 | Escherichia coli BL21(DE3) | Retron-Eco1 filament with ADP-ribosylated Effector (full map with 2 segments) | Electron microscopy | 3.09 | 2024-06-05 | |||
| 15 | 8QBM|1|W | Retron-Eco1-msr, Retron-Eco1-A2 | Escherichia coli BL21(DE3) | Retron-Eco1 filament with ADP-ribosylated Effector (full map with 2 segments) | Electron microscopy | 3.09 | 2024-06-05 | |||
| 16 | 8QBK|1|C | Retron-Eco1-msr, Retron-Eco1-A2 | Escherichia coli BL21(DE3) | Retron-Eco1 filament with ADP-ribosylated Effector (local map with 1 segment) | Electron microscopy | 2.99 | 2024-06-05 | |||
| 17 | 8QBK|1|M | Retron-Eco1-msr, Retron-Eco1-A2 | Escherichia coli BL21(DE3) | Retron-Eco1 filament with ADP-ribosylated Effector (local map with 1 segment) | Electron microscopy | 2.99 | 2024-06-05 | |||
| 18 | 7V9U|1|G+ 7V9U|1|H | RNA (81-MER), RNA (5'-R(P*CP*GP*UP*AP*AP*GP*GP*G)-3') | Escherichia coli | Cryo-EM structure of E.coli retron-Ec86 (RT-msDNA-RNA) at 3.2 angstrom | Electron microscopy | 3.12 | 2022-08-31 | |||
| 19 | 8QBK|1|R | Retron-Eco1-msr, Retron-Eco1-A2 | Escherichia coli BL21(DE3) | Retron-Eco1 filament with ADP-ribosylated Effector (local map with 1 segment) | Electron microscopy | 2.99 | 2024-06-05 | |||
| 20 | 8QBM|1|R | Retron-Eco1-msr, Retron-Eco1-A2 | Escherichia coli BL21(DE3) | Retron-Eco1 filament with ADP-ribosylated Effector (full map with 2 segments) | Electron microscopy | 3.09 | 2024-06-05 | |||
| 21 | 8QBM|1|O | Retron-Eco1-msr, Retron-Eco1-A2 | Escherichia coli BL21(DE3) | Retron-Eco1 filament with ADP-ribosylated Effector (full map with 2 segments) | Electron microscopy | 3.09 | 2024-06-05 | |||
| 22 | 8QBM|1|C | Retron-Eco1-msr, Retron-Eco1-A2 | Escherichia coli BL21(DE3) | Retron-Eco1 filament with ADP-ribosylated Effector (full map with 2 segments) | Electron microscopy | 3.09 | 2024-06-05 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 8QBL|1|b | Retron-Eco1 filament with inactive effector (E106A, 2 segments) | ELECTRON MICROSCOPY | 2.66 | 61 |
| 2 | 8QBM|1|b | Retron-Eco1 filament with ADP-ribosylated Effector (full map with 2 segments) | ELECTRON MICROSCOPY | 3.09 | 61 |
| 3 | 8QBK|1|R | Retron-Eco1 filament with ADP-ribosylated Effector (local map with 1 segment) | ELECTRON MICROSCOPY | 2.99 | 61 |
| 4 | 8QBK|1|W | Retron-Eco1 filament with ADP-ribosylated Effector (local map with 1 segment) | ELECTRON MICROSCOPY | 2.99 | 61 |
| 5 | 8QBK|1|C | Retron-Eco1 filament with ADP-ribosylated Effector (local map with 1 segment) | ELECTRON MICROSCOPY | 2.99 | 61 |
| 6 | 8QBM|1|R | Retron-Eco1 filament with ADP-ribosylated Effector (full map with 2 segments) | ELECTRON MICROSCOPY | 3.09 | 61 |
| 7 | 8QBM|1|C | Retron-Eco1 filament with ADP-ribosylated Effector (full map with 2 segments) | ELECTRON MICROSCOPY | 3.09 | 61 |
| 8 | 8QBM|1|W | Retron-Eco1 filament with ADP-ribosylated Effector (full map with 2 segments) | ELECTRON MICROSCOPY | 3.09 | 61 |
| 9 | 8QBM|1|M | Retron-Eco1 filament with ADP-ribosylated Effector (full map with 2 segments) | ELECTRON MICROSCOPY | 3.09 | 61 |
| 10 | 8QBL|1|C | Retron-Eco1 filament with inactive effector (E106A, 2 segments) | ELECTRON MICROSCOPY | 2.66 | 61 |
| 11 | 8QBL|1|M | Retron-Eco1 filament with inactive effector (E106A, 2 segments) | ELECTRON MICROSCOPY | 2.66 | 58 |
| 12 | 8QBL|1|W | Retron-Eco1 filament with inactive effector (E106A, 2 segments) | ELECTRON MICROSCOPY | 2.66 | 61 |
| 13 | 8QBL|1|R | Retron-Eco1 filament with inactive effector (E106A, 2 segments) | ELECTRON MICROSCOPY | 2.66 | 61 |
| 14 | 8QBM|1|O | Retron-Eco1 filament with ADP-ribosylated Effector (full map with 2 segments) | ELECTRON MICROSCOPY | 3.09 | 61 |
| 15 | 8QBL|1|O | Retron-Eco1 filament with inactive effector (E106A, 2 segments) | ELECTRON MICROSCOPY | 2.66 | 61 |
| 16 | 8QBK|1|M | Retron-Eco1 filament with ADP-ribosylated Effector (local map with 1 segment) | ELECTRON MICROSCOPY | 2.99 | 61 |
| 17 | 7V9X|1|H+7V9X|1|I | Cryo-EM structure of E.coli retron-Ec86 in complex with its effector at 2.8 angstrom | ELECTRON MICROSCOPY | 2.82 | 58 |
| 18 | 7XJG|1|H+7XJG|1|I | Cryo-EM structure of E.coli retron-Ec86 in complex with its effector at 2.5 angstrom | ELECTRON MICROSCOPY | 2.51 | 58 |
| 19 | 7XJG|1|E+7XJG|1|F | Cryo-EM structure of E.coli retron-Ec86 in complex with its effector at 2.5 angstrom | ELECTRON MICROSCOPY | 2.51 | 58 |
| 20 | 7V9X|1|E+7V9X|1|F | Cryo-EM structure of E.coli retron-Ec86 in complex with its effector at 2.8 angstrom | ELECTRON MICROSCOPY | 2.82 | 58 |
| 21 | 7V9U|1|G+7V9U|1|H | Cryo-EM structure of E.coli retron-Ec86 (RT-msDNA-RNA) at 3.2 angstrom | ELECTRON MICROSCOPY | 3.12 | 58 |
| 22 | 7V9U|1|E+7V9U|1|F | Cryo-EM structure of E.coli retron-Ec86 (RT-msDNA-RNA) at 3.2 angstrom | ELECTRON MICROSCOPY | 3.12 | 57 |
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