#IFECompound(s)RNA source organismTitleMethodResolutionDate
16E1S|1|A (rep)RNA (33-MER)Caldanaerobacter subterraneusCrystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 1: 2-[(dibenzo[b,d]furan-2-yl)oxy]ethan-1-amineX-RAY DIFFRACTION1.82019-04-10
26E1T|1|ARNA (33-MER)Caldanaerobacter subterraneusCrystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 1: 2-[(dibenzo[b,d]furan-2-yl)oxy]ethan-1-amineX-RAY DIFFRACTION1.82019-04-10
36E1W|1|ARNA (33-MER)Caldanaerobacter subterraneusCrystal structure of a class I PreQ1 riboswitch complexed with PreQ1X-RAY DIFFRACTION1.692019-04-10
46E1U|1|ARNA (33-MER)Caldanaerobacter subterraneusCrystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 2: 2-[(dibenzo[b,d]furan-2-yl)oxy]-N,N-dimethylethan-1-amineX-RAY DIFFRACTION1.942019-04-10
57E9E|1|A33-mer RNACaldanaerobacter subterraneus subsp. tengcongensisCrystal structure of a class I PreQ1 riboswitch aptamer (ab13-14) complexed with a cognate ligand-derived photoaffinity probeX-RAY DIFFRACTION1.572021-11-17
66VUH|1|APREQ1 RIBOSWITCHCaldanaerobacter subterraneusAPO PreQ1 riboswitch aptamer grown in Mn2+X-RAY DIFFRACTION22020-06-24
76VUI|1|APREQ1 RIBOSWITCHCaldanaerobacter subterraneusMetabolite-bound PreQ1 riboswitch with Mn2+X-RAY DIFFRACTION2.682020-06-24
87E9I|1|A33-mer RNACaldanaerobacter subterraneus subsp. tengcongensisCrystal structure of a class I PreQ1 riboswitch aptamer (wild-type) complexed with a cognate ligand-derived photoaffinity probeX-RAY DIFFRACTION2.82021-11-17
96E1V|1|ARNA (33-MER)Caldanaerobacter subterraneusCrystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 3: 2-[(9H-carbazol-3-yl)oxy]-N,N-dimethylethan-1-amineX-RAY DIFFRACTION2.562019-04-10
103Q50|1|APREQ1 RIBOSWITCHStructural analysis of a class I PreQ1 riboswitch aptamer in the metabolite-bound stateX-RAY DIFFRACTION2.752011-05-18
113Q51|1|APREQ1 RIBOSWITCHStructural analysis of a class I PreQ1 riboswitch aptamer in the metabolite-free state.X-RAY DIFFRACTION2.852011-05-18
123GCA|1|APreQ1 riboswitchThe structural basis for recognition of the preQ0 metabolite by an unusually small riboswitch aptamer domainX-RAY DIFFRACTION2.752009-03-03

Release history

Release3.2053.2063.2073.2083.2093.2103.2113.2123.2133.2143.2153.2163.2173.2183.2193.2203.2213.2223.2233.2243.2253.2263.2273.2283.2293.2303.2313.2323.2333.2343.2353.2363.2373.2383.2393.2403.2413.2423.2433.2443.2453.2463.247
Date2021-11-172021-11-242021-12-012021-12-082021-12-152021-12-222021-12-292022-01-052022-01-122022-01-192022-01-262022-02-022022-02-092022-02-162022-02-232022-03-022022-03-092022-03-162022-03-232022-03-302022-04-062022-04-132022-04-202022-04-272022-05-042022-05-112022-05-182022-05-252022-06-012022-06-082022-06-152022-06-222022-06-292022-07-062022-07-132022-07-202022-07-272022-08-032022-08-102022-08-172022-08-242022-08-312022-09-07

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_80276.3NR_4.0_80276.23.205(10) 6VUI|1|A, 6VUH|1|A, 6E1W|1|A, 6E1V|1|A, 6E1U|1|A, 6E1T|1|A, 6E1S|1|A, 3Q51|1|A, 3Q50|1|A, 3GCA|1|A(2) 7E9I|1|A, 7E9E|1|A(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16VUI|1|AMetabolite-bound PreQ1 riboswitch with Mn2+X-RAY DIFFRACTION2.6833
26E1U|1|ACrystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 2: 2-[(dibenzo[b,d]furan-2-yl)oxy]-N,N-dimethylethan-1-amineX-RAY DIFFRACTION1.9431
36E1S|1|ACrystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 1: 2-[(dibenzo[b,d]furan-2-yl)oxy]ethan-1-amineX-RAY DIFFRACTION1.831
46E1T|1|ACrystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 1: 2-[(dibenzo[b,d]furan-2-yl)oxy]ethan-1-amineX-RAY DIFFRACTION1.830
56VUH|1|AAPO PreQ1 riboswitch aptamer grown in Mn2+X-RAY DIFFRACTION233
63Q51|1|AStructural analysis of a class I PreQ1 riboswitch aptamer in the metabolite-free state.X-RAY DIFFRACTION2.8532
76E1V|1|ACrystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 3: 2-[(9H-carbazol-3-yl)oxy]-N,N-dimethylethan-1-amineX-RAY DIFFRACTION2.5630
83GCA|1|AThe structural basis for recognition of the preQ0 metabolite by an unusually small riboswitch aptamer domainX-RAY DIFFRACTION2.7533
93Q50|1|AStructural analysis of a class I PreQ1 riboswitch aptamer in the metabolite-bound stateX-RAY DIFFRACTION2.7533
107E9I|1|ACrystal structure of a class I PreQ1 riboswitch aptamer (wild-type) complexed with a cognate ligand-derived photoaffinity probeX-RAY DIFFRACTION2.833
116E1W|1|ACrystal structure of a class I PreQ1 riboswitch complexed with PreQ1X-RAY DIFFRACTION1.6931
127E9E|1|ACrystal structure of a class I PreQ1 riboswitch aptamer (ab13-14) complexed with a cognate ligand-derived photoaffinity probeX-RAY DIFFRACTION1.5731