Equivalence class NR_4.0_83098.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8XSX|1|CC (rep) | Transfer RNA | E-tRNA | Homo sapiens | Eukarya | RF00005 | Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2 | Electron microscopy | 2.4 | 2024-07-10 |
| 2 | 8K2C|1|CC | Transfer RNA | tRNA-Met | Homo sapiens | Eukarya | RF00005 | Cryo-EM structure of the human 80S ribosome with Tigecycline | Electron microscopy | 2.4 | 2024-07-10 |
| 3 | 8PPL|1|Iw | Transfer RNA | Met-tRNAi(Met) | Homo sapiens | Eukarya | RF00005 | MERS-CoV Nsp1 bound to the human 43S pre-initiation complex | Electron microscopy | 2.65 | 2023-10-18 |
| 4 | 6ZP4|1|1 | Transfer RNA | tRNA | Homo sapiens | Eukarya | RF00005 | SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2 | Electron microscopy | 2.9 | 2020-07-29 |
| 5 | 6QZP|1|S6 | Transfer RNA | E site tRNA (75-MER) | Homo sapiens | Eukarya | RF00005 | High-resolution cryo-EM structure of the human 80S ribosome | Electron microscopy | 2.9 | 2019-04-24 |
| 6 | 7QVP|1|B5 | Transfer RNA | mRNA, tRNA P/E | Homo sapiens | Eukarya | RF00005 | Human collided disome (di-ribosome) stalled on XBP1 mRNA | Electron microscopy | 3 | 2022-10-12 |
| 7 | 8XSY|1|CC | Transfer RNA | E-tRNA | Homo sapiens | Eukarya | RF00005 | Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled) | Electron microscopy | 3 | 2024-07-10 |
| 8 | 8XSZ|1|CC | Transfer RNA | tRNA | Homo sapiens | Eukarya | RF00005 | Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA | Electron microscopy | 3.2 | 2024-07-10 |
| 9 | 8XSZ|1|CD | Transfer RNA | tRNA | Homo sapiens | Eukarya | RF00005 | Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA | Electron microscopy | 3.2 | 2024-07-10 |
| 10 | 7A09|1|f | Transfer RNA | tRNA | Homo sapiens | Eukarya | RF00005 | Structure of a human ABCE1-bound 43S pre-initiation complex - State III | Electron microscopy | 3.5 | 2020-10-14 |
| 11 | 8OZ0|1|y | Transfer RNA | tRNAiMet | Homo sapiens | Eukarya | RF00005 | Structure of a human 48S translation initiation complex with eIF4F and eIF4A | Electron microscopy | 3.5 | 2024-02-07 |
| 12 | 5T2C|1|An | Transfer RNA | tRNA | Homo sapiens | Eukarya | RF00005 | CryoEM structure of the human ribosome at 3.6 Angstrom resolution | Electron microscopy | 3.6 | 2017-01-25 |
| 13 | 6ZMW|1|w | Transfer RNA | Initiator Met-tRNA-i | Homo sapiens | Eukarya | RF00005 | Structure of a human 48S translational initiation complex | Electron microscopy | 3.7 | 2020-09-23 |
| 14 | 7QP7|1|w | Transfer RNA | Initiator Met-tRNA-i, mRNA | Homo sapiens | Eukarya | RF00005 | Structure of the human 48S initiation complex in closed state (h48S AUG closed) | Electron microscopy | 3.7 | 2022-05-11 |
| 15 | 6Y57|1|B4 | Transfer RNA | mRNA, P/E tRNA | Homo sapiens | Eukarya | RF00005 | Structure of human ribosome in hybrid-PRE state | Electron microscopy | 3.5 | 2020-04-15 |
| 16 | 6YBV|1|w | Transfer RNA | Initiator methionine tRNA | Homo sapiens | Eukarya | RF00005 | Structure of a human 48S translational initiation complex - eIF2-TC | Electron microscopy | 3.8 | 2020-09-16 |
| 17 | 4UG0|1|S6 | Transfer RNA | HUMAN INITIATOR MET-TRNA-I | Homo sapiens | Eukarya | RF00005 | STRUCTURE OF THE HUMAN 80S RIBOSOME | Electron microscopy | 3.6 | 2015-06-10 |
Release history
| Release | 3.343 |
|---|---|
| Date | 2024-07-10 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well.
| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6QZP|1|S6 | High-resolution cryo-EM structure of the human 80S ribosome | ELECTRON MICROSCOPY | 2.9 | 75 |
| 2 | 4UG0|1|S6 | STRUCTURE OF THE HUMAN 80S RIBOSOME | ELECTRON MICROSCOPY | 3.6 | 75 |
| 3 | 5T2C|1|An | CryoEM structure of the human ribosome at 3.6 Angstrom resolution | ELECTRON MICROSCOPY | 3.6 | 75 |
| 4 | 7QVP|1|B5 | Human collided disome (di-ribosome) stalled on XBP1 mRNA | ELECTRON MICROSCOPY | 3 | 75 |
| 5 | 6Y57|1|B4 | Structure of human ribosome in hybrid-PRE state | ELECTRON MICROSCOPY | 3.5 | 75 |
| 6 | 7A09|1|f | Structure of a human ABCE1-bound 43S pre-initiation complex - State III | ELECTRON MICROSCOPY | 3.5 | 75 |
| 7 | 6ZP4|1|1 | SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2 | ELECTRON MICROSCOPY | 2.9 | 75 |
| 8 | 8PPL|1|Iw | MERS-CoV Nsp1 bound to the human 43S pre-initiation complex | ELECTRON MICROSCOPY | 2.65 | 67 |
| 9 | 7QP7|1|w | Structure of the human 48S initiation complex in closed state (h48S AUG closed) | ELECTRON MICROSCOPY | 3.7 | 75 |
| 10 | 6YBV|1|w | Structure of a human 48S translational initiation complex - eIF2-TC | ELECTRON MICROSCOPY | 3.8 | 75 |
| 11 | 6ZMW|1|w | Structure of a human 48S translational initiation complex | ELECTRON MICROSCOPY | 3.7 | 75 |
| 12 | 8OZ0|1|y | Structure of a human 48S translation initiation complex with eIF4F and eIF4A | ELECTRON MICROSCOPY | 3.5 | 75 |
| 13 | 8XSZ|1|CD | Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA | ELECTRON MICROSCOPY | 3.2 | 75 |
| 14 | 8K2C|1|CC | Cryo-EM structure of the human 80S ribosome with Tigecycline | ELECTRON MICROSCOPY | 2.4 | 75 |
| 15 | 8XSY|1|CC | Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled) | ELECTRON MICROSCOPY | 3 | 69 |
| 16 | 8XSZ|1|CC | Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA | ELECTRON MICROSCOPY | 3.2 | 75 |
| 17 | 8XSX|1|CC | Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2 | ELECTRON MICROSCOPY | 2.4 | 75 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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