#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14WF9|1|Y (rep)5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycinX-ray diffraction3.432015-10-21
25HKV|1|Y5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycinX-ray diffraction3.662017-05-03
34WFA|1|Y5S ribosomal RNA5S rRNAStaphylococcus aureusBacteriaRF00001The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolidX-ray diffraction3.392015-10-21
45HL7|1|Y5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulinX-ray diffraction3.552016-12-21
54WCE|1|Y5S ribosomal RNA5S rRNAStaphylococcus aureusBacteriaRF00001The crystal structure of the large ribosomal subunit of Staphylococcus aureusX-ray diffraction3.532015-10-21
64WFB|1|Y5S ribosomal RNA5S rRNAStaphylococcus aureusBacteriaRF00001The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205X-ray diffraction3.432015-10-21
75NRG|1|Y5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02X-ray diffraction3.442017-08-09
86S0Z|1|B5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin.Electron microscopy2.32019-08-21
96S0X|1|B5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.Electron microscopy2.422019-08-21
106HMA|1|B5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunitElectron microscopy2.652018-11-14
117ASM|1|B5S ribosomal RNA5S rRNAStaphylococcus aureusBacteriaRF00001Staphylococcus aureus 50S after 30 minutes incubation at 37CElectron microscopy2.482021-11-17
127ASP|1|35S ribosomal RNA5S rRNAStaphylococcus aureusBacteriaRF00001Staphylococcus aureus 70S after 50 minutes incubation at 37CElectron microscopy2.862021-11-17
135NGM|1|AB5S ribosomal RNA5S Ribosomal RNAStaphylococcus aureusBacteriaRF000012.9S structure of the 70S ribosome composing the S. aureus 100S complexElectron microscopy2.92017-10-04
147ASO|1|C5S ribosomal RNA5SStaphylococcus aureusBacteriaRF00001Staphylococcus aureus 70S after 30 minutes incubation at 37CElectron microscopy3.112021-11-17
157NHM|1|B5S ribosomal RNA5S rRNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF0000170S ribosome from Staphylococcus aureusElectron microscopy3.12021-05-05
167NHL|1|B5S ribosomal RNA5S rRNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF00001VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureusElectron microscopy3.12021-05-05
176YEF|1|B5S ribosomal RNA5S rRNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF0000170S initiation complex with assigned rRNA modifications from Staphylococcus aureusElectron microscopy3.22021-01-27
187ASN|1|B5S ribosomal RNA5SStaphylococcus aureusBacteriaRF00001Staphylococcus aureus 50S after 30 minutes incubation a 37CElectron microscopy2.732021-11-17
196SJ6|1|B5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureusElectron microscopy3.232020-04-08
205T7V|1|C5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)Electron microscopy3.62017-05-31
216S12|1|B5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).Electron microscopy3.22019-08-21
225ND8|1|B5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001Hibernating ribosome from Staphylococcus aureus (Unrotated state)Electron microscopy3.72017-06-28
235ND9|1|B5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001Hibernating ribosome from Staphylococcus aureus (Rotated state)Electron microscopy3.72017-06-28
245LI0|1|B5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF0000170S ribosome from Staphylococcus aureusElectron microscopy3.82016-12-28
255TCU|1|C5S ribosomal RNA5S rRNA CHAINStaphylococcus aureusBacteriaRF00001Methicillin sensitive Staphylococcus aureus 70S ribosomeElectron microscopy3.92017-05-24
266S13|1|B5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).Electron microscopy3.582019-08-21

Release history

Release3.2053.2063.2073.2083.2093.2103.2113.2123.2133.2143.215
Date2021-11-172021-11-242021-12-012021-12-082021-12-152021-12-222021-12-292022-01-052022-01-122022-01-192022-01-26

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15T7V|1|CMethicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)ELECTRON MICROSCOPY3.6114
25HL7|1|YThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulinX-RAY DIFFRACTION3.55114
35NRG|1|YThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02X-RAY DIFFRACTION3.44114
45HKV|1|YThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycinX-RAY DIFFRACTION3.66114
54WCE|1|YThe crystal structure of the large ribosomal subunit of Staphylococcus aureusX-RAY DIFFRACTION3.53114
64WFA|1|YThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolidX-RAY DIFFRACTION3.39114
74WF9|1|YThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycinX-RAY DIFFRACTION3.43114
84WFB|1|YThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205X-RAY DIFFRACTION3.43114
95LI0|1|B70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.8114
105ND9|1|BHibernating ribosome from Staphylococcus aureus (Rotated state)ELECTRON MICROSCOPY3.7114
115ND8|1|BHibernating ribosome from Staphylococcus aureus (Unrotated state)ELECTRON MICROSCOPY3.7114
125TCU|1|CMethicillin sensitive Staphylococcus aureus 70S ribosomeELECTRON MICROSCOPY3.9114
137ASP|1|3Staphylococcus aureus 70S after 50 minutes incubation at 37CELECTRON MICROSCOPY2.86114
147ASO|1|CStaphylococcus aureus 70S after 30 minutes incubation at 37CELECTRON MICROSCOPY3.11114
156YEF|1|B70S initiation complex with assigned rRNA modifications from Staphylococcus aureusELECTRON MICROSCOPY3.2115
167ASM|1|BStaphylococcus aureus 50S after 30 minutes incubation at 37CELECTRON MICROSCOPY2.48115
176HMA|1|BImproved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunitELECTRON MICROSCOPY2.65115
187NHM|1|B70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.1113
197NHL|1|BVgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.1113
205NGM|1|AB2.9S structure of the 70S ribosome composing the S. aureus 100S complexELECTRON MICROSCOPY2.9115
216S0Z|1|BErythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin.ELECTRON MICROSCOPY2.3114
226S0X|1|BErythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.ELECTRON MICROSCOPY2.42115
236S12|1|BErythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).ELECTRON MICROSCOPY3.2115
246S13|1|BErythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).ELECTRON MICROSCOPY3.58115
256SJ6|1|BCryo-EM structure of 50S-RsfS complex from Staphylococcus aureusELECTRON MICROSCOPY3.23112
267ASN|1|BStaphylococcus aureus 50S after 30 minutes incubation a 37CELECTRON MICROSCOPY2.73106
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