#PDBTitleRNA source organismCompoundsMethodResolutionDate
1488D|D (rep)CATALYTIC RNA ENZYME-PRODUCT COMPLEXRNA RIBOZYME STRAND, FIRST RNA FRAGMENT OF CLEAVED SUBSTRATE, SECOND RNA FRAGMENT OF CLEAVED SUBSTRATE, UNCLEAVED RNA SUBSTRATEX-RAY DIFFRACTION3.12000-03-06
21MME|BTHE CRYSTAL STRUCTURE OF AN ALL-RNA HAMMERHEAD RIBOZYME: A PROPOSED MECHANISM FOR RNA CATALYTIC CLEAVAGERNA HAMMERHEAD RIBOZYME, RNA HAMMERHEAD RIBOZYME, RNA HAMMERHEAD RIBOZYME, RNA HAMMERHEAD RIBOZYMEX-RAY DIFFRACTION3.11996-02-06
31NYI|BCrosslinked Hammerhead Ribozyme Initial State5'-R(P*GP*UP*GP*GP*UP*CP*UP*GP*AP*UP*GP*AP*GP*GP*CP*C)-3', 5'-R(*GP*CP*CP*GP*AP*AP*AP*CP*UP*CP*GP*UP*AP*AP*GP*AP*GP*UP*CP*AP*CP*CP*AP*C)-3'X-RAY DIFFRACTION2.852004-02-24
41Q29|BHammerhead Ribozyme with 5'-5' G-G linkage: Conformational change experiment5'-R(*GP*GP*UP*GP*GP*UP*CP*UP*GP*AP*UP*GP*AP*GP*GP*CP*C)-3', RibozymeX-RAY DIFFRACTION32004-02-24
5299D|BCAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: THE HAMMERHEAD RIBOZYMERNA HAMMERHEAD RIBOZYME, RNA HAMMERHEAD RIBOZYMEX-RAY DIFFRACTION31997-01-24
6300D|BCAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: RNA HAMMERHEAD RIBOZYME, MN(II)-SOAKEDRNA HAMMERHEAD RIBOZYME, RNA HAMMERHEAD RIBOZYMEX-RAY DIFFRACTION31997-01-24
7301D|BCAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: RNA HAMMERHEAD RIBOZYME, MG(II)-SOAKEDRNA HAMMERHEAD RIBOZYME, RNA HAMMERHEAD RIBOZYMEX-RAY DIFFRACTION31997-01-24
8359D|BINHIBITION OF THE HAMMERHEAD RIBOZYME CLEAVAGE REACTION BY SITE-SPECIFIC BINDING OF TB(III)RNA HAMMERHEAD RIBOZYME, RNA HAMMERHEAD RIBOZYMEX-RAY DIFFRACTION2.91997-11-07
9379D|BTHE STRUCTURAL BASIS OF HAMMERHEAD RIBOZYME SELF-CLEAVAGERNA (5'-R(*GP*UP*GP*GP*UP*CP*UP*GP*AP*UP*GP*AP*GP*GP*CP*C)-3'), RNA (5'-R(*GP*GP*CP*CP*GP*AP*AP*AP*CP*UP*CP*GP*UP*AP*AP*GP*A P*GP*UP*CP*AP*CP*CP*AP*C)-3')X-RAY DIFFRACTION3.11998-02-11

Release history

Release0.10.20.30.40.50.60.70.80.90.100.110.120.130.140.150.160.170.180.190.200.210.220.230.240.250.260.270.280.290.300.310.320.330.340.350.360.370.380.390.400.410.420.430.440.450.460.470.480.490.500.510.520.530.540.550.560.570.580.590.600.610.620.630.640.650.660.670.680.690.700.710.720.730.740.750.760.770.780.790.800.810.820.830.840.850.860.870.880.890.900.910.920.930.940.950.960.970.980.990.1000.1010.1020.1030.1040.1050.1060.1070.1080.1090.1101.01.11.21.31.41.51.61.71.81.91.101.111.121.131.141.151.161.171.181.191.201.211.221.231.241.251.261.271.281.291.301.311.321.331.341.351.361.371.381.391.401.411.421.431.441.451.461.471.481.491.501.511.521.531.541.551.561.571.581.591.601.611.621.631.641.651.661.671.681.691.701.711.721.731.741.751.761.771.781.791.801.811.821.831.841.851.861.871.881.89
Date2011-02-052011-02-122011-02-162011-02-192011-02-262011-03-052011-03-122011-03-192011-03-262011-04-022011-04-092011-04-112011-04-162011-04-232011-04-302011-05-072011-05-142011-05-212011-05-282011-06-042011-06-112011-06-182011-06-252011-07-022011-07-092011-07-162011-07-232011-07-302011-08-062011-08-132011-08-202011-08-272011-09-032011-09-102011-09-172011-09-242011-10-012011-10-082011-10-152011-10-222011-10-292011-11-052011-11-122011-11-192011-11-262011-12-032011-12-102011-12-172011-12-242011-12-312012-01-072012-01-142012-01-212012-01-282012-02-042012-02-112012-02-182012-02-252012-03-032012-03-102012-03-172012-03-242012-03-312012-04-072012-04-142012-04-212012-04-282012-05-052012-05-122012-05-192012-05-262012-06-022012-06-092012-06-162012-06-232012-06-302012-07-072012-07-142012-07-212012-07-282012-08-042012-08-112012-08-182012-08-252012-09-012012-09-082012-09-152012-09-222012-09-292012-10-062012-10-132012-10-202012-10-272012-11-032012-11-102012-11-172012-11-242012-12-012012-12-082012-12-152012-12-222012-12-292013-01-052013-01-122013-01-192013-01-262013-02-022013-02-092013-02-162013-02-232013-03-022013-03-092013-03-162013-03-232013-03-302013-04-062013-04-132013-04-202013-04-272013-05-042013-05-112013-05-182013-05-252013-06-012013-06-082013-06-152013-06-222013-06-292013-07-062013-07-132013-07-202013-07-272013-08-032013-08-102013-08-172013-08-242013-08-312013-09-072013-09-142013-09-212013-09-282013-10-052013-10-122013-10-192013-10-262013-11-092013-11-162013-11-232013-11-302013-12-072013-12-142013-12-212013-12-282014-01-042014-01-112014-01-182014-01-252014-02-012014-02-082014-02-152014-02-222014-03-012014-03-082014-03-172014-03-222014-03-292014-04-052014-04-122014-04-192014-04-262014-05-032014-05-102014-05-172014-05-312014-06-072014-06-132014-06-202014-06-272014-07-042014-07-182014-07-252014-08-012014-08-082014-08-152014-08-222014-08-292014-09-052014-09-122014-09-192014-09-262014-10-032014-10-102014-10-172014-10-242014-10-312014-11-072014-11-142014-11-212014-11-282014-12-05

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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
1379D|BTHE STRUCTURAL BASIS OF HAMMERHEAD RIBOZYME SELF-CLEAVAGEX-RAY DIFFRACTION3.125
21Q29|BHammerhead Ribozyme with 5'-5' G-G linkage: Conformational change experimentX-RAY DIFFRACTION324
31NYI|BCrosslinked Hammerhead Ribozyme Initial StateX-RAY DIFFRACTION2.8524
4299D|BCAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: THE HAMMERHEAD RIBOZYMEX-RAY DIFFRACTION325
5301D|BCAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: RNA HAMMERHEAD RIBOZYME, MG(II)-SOAKEDX-RAY DIFFRACTION325
6300D|BCAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: RNA HAMMERHEAD RIBOZYME, MN(II)-SOAKEDX-RAY DIFFRACTION325
7488D|DCATALYTIC RNA ENZYME-PRODUCT COMPLEXX-RAY DIFFRACTION3.125
8359D|BINHIBITION OF THE HAMMERHEAD RIBOZYME CLEAVAGE REACTION BY SITE-SPECIFIC BINDING OF TB(III)X-RAY DIFFRACTION2.925
91MME|BTHE CRYSTAL STRUCTURE OF AN ALL-RNA HAMMERHEAD RIBOZYME: A PROPOSED MECHANISM FOR RNA CATALYTIC CLEAVAGEX-RAY DIFFRACTION3.125