Equivalence class NR_4.0_87052.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4MSR|1|A+ 4MSR|1|B (rep) | RNA 10mer duplex with six 2'-5'-linkages | RNA 10mer duplex with six 2'-5'-linkages | X-ray diffraction | 1.2 | 2014-02-12 | ||||
| 2 | 5TDJ|1|A | RNA (5'-R(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3') | synthetic construct | RNA decamer duplex with four 2'-5'-linkages | X-ray diffraction | 1.5 | 2017-01-11 | |||
| 3 | 4MS9|1|A | Native RNA duplex 10mer | Native RNA-10mer Structure: ccggcgccgg | X-ray diffraction | 1.32 | 2014-02-12 | ||||
| 4 | 4MSB|1|A+ 4MSB|1|B | RNA 10mer duplex with two 2'-5'-linkages | RNA 10mer duplex with two 2'-5'-linkages | X-ray diffraction | 1.55 | 2014-02-12 | ||||
| 5 | 5TDK|1|A+ 5TDK|1|B | RNA (5'-R(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3') | synthetic construct | RNA decamer duplex with eight 2'-5'-linkages | X-ray diffraction | 1.43 | 2017-01-11 | |||
| 6 | 5TDJ|1|B | RNA (5'-R(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3') | synthetic construct | RNA decamer duplex with four 2'-5'-linkages | X-ray diffraction | 1.5 | 2017-01-11 | |||
| 7 | 4MSB|1|C+ 4MSB|1|D | RNA 10mer duplex with two 2'-5'-linkages | RNA 10mer duplex with two 2'-5'-linkages | X-ray diffraction | 1.55 | 2014-02-12 | ||||
| 8 | 4MSB|1|E+ 4MSB|1|F | RNA 10mer duplex with two 2'-5'-linkages | RNA 10mer duplex with two 2'-5'-linkages | X-ray diffraction | 1.55 | 2014-02-12 |
Release history
| Release | 2.132 | 2.133 | 2.134 | 2.135 | 2.136 | 2.137 | 2.138 | 2.139 | 2.140 | 2.141 | 2.142 | 2.143 | 2.144 | 2.145 | 2.146 | 2.147 | 2.148 | 2.149 | 2.150 | 2.151 | 2.152 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2017-06-21 | 2017-06-24 | 2017-06-28 | 2017-07-04 | 2017-07-10 | 2017-07-15 | 2017-07-26 | 2017-07-31 | 2017-08-05 | 2017-08-12 | 2017-08-19 | 2017-08-26 | 2017-09-03 | 2017-09-09 | 2017-09-16 | 2017-09-23 | 2017-09-30 | 2017-10-07 | 2017-10-14 | 2017-10-21 | 2017-10-28 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_87052.1 | NR_4.0_47763.1 | 2.132 | (8) 4MS9|1|A, 4MSB|1|A+4MSB|1|B, 4MSB|1|C+4MSB|1|D, 4MSB|1|E+4MSB|1|F, 4MSR|1|A+4MSR|1|B, 5TDJ|1|A, 5TDJ|1|B, 5TDK|1|A+5TDK|1|B | (0) | (6) 100D|1|A+100D|1|B, 161D|1|A, 161D|1|B, 393D|1|A, 393D|1|B, 394D|1|A+394D|1|B |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_87052.1 | NR_4.0_71188.1 | 2.153 | (8) 4MS9|1|A, 4MSB|1|A+4MSB|1|B, 4MSB|1|C+4MSB|1|D, 4MSB|1|E+4MSB|1|F, 4MSR|1|A+4MSR|1|B, 5TDJ|1|A, 5TDJ|1|B, 5TDK|1|A+5TDK|1|B | (0) | (6) 100D|1|A+100D|1|B, 161D|1|A, 161D|1|B, 393D|1|A, 393D|1|B, 394D|1|A+394D|1|B |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well.
| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4MSR|1|A+4MSR|1|B | RNA 10mer duplex with six 2'-5'-linkages | X-RAY DIFFRACTION | 1.2 | 12 |
| 2 | 5TDK|1|A+5TDK|1|B | RNA decamer duplex with eight 2'-5'-linkages | X-RAY DIFFRACTION | 1.43 | 10 |
| 3 | 4MSB|1|A+4MSB|1|B | RNA 10mer duplex with two 2'-5'-linkages | X-RAY DIFFRACTION | 1.55 | 10 |
| 4 | 4MSB|1|C+4MSB|1|D | RNA 10mer duplex with two 2'-5'-linkages | X-RAY DIFFRACTION | 1.55 | 10 |
| 5 | 5TDJ|1|B | RNA decamer duplex with four 2'-5'-linkages | X-RAY DIFFRACTION | 1.5 | 10 |
| 6 | 5TDJ|1|A | RNA decamer duplex with four 2'-5'-linkages | X-RAY DIFFRACTION | 1.5 | 10 |
| 7 | 4MS9|1|A | Native RNA-10mer Structure: ccggcgccgg | X-RAY DIFFRACTION | 1.32 | 10 |
| 8 | 4MSB|1|E+4MSB|1|F | RNA 10mer duplex with two 2'-5'-linkages | X-RAY DIFFRACTION | 1.55 | 10 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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