Equivalence class NR_4.0_87052.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4MSR|1|A+ 4MSR|1|B (rep) | RNA 10mer duplex with six 2'-5'-linkages | RNA 10mer duplex with six 2'-5'-linkages | X-ray diffraction | 1.2 | 2014-02-12 | ||||
| 2 | 5TDJ|1|A | RNA (5'-R(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3') | synthetic construct | Synthetic | RNA decamer duplex with four 2'-5'-linkages | X-ray diffraction | 1.5 | 2017-01-11 | ||
| 3 | 4MS9|1|A | Native RNA duplex 10mer | Native RNA-10mer Structure: ccggcgccgg | X-ray diffraction | 1.32 | 2014-02-12 | ||||
| 4 | 4MSB|1|A+ 4MSB|1|B | RNA 10mer duplex with two 2'-5'-linkages | RNA 10mer duplex with two 2'-5'-linkages | X-ray diffraction | 1.55 | 2014-02-12 | ||||
| 5 | 5TDK|1|A+ 5TDK|1|B | RNA (5'-R(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3') | synthetic construct | Synthetic | RNA decamer duplex with eight 2'-5'-linkages | X-ray diffraction | 1.43 | 2017-01-11 | ||
| 6 | 5TDJ|1|B | RNA (5'-R(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3') | synthetic construct | Synthetic | RNA decamer duplex with four 2'-5'-linkages | X-ray diffraction | 1.5 | 2017-01-11 | ||
| 7 | 4MSB|1|C+ 4MSB|1|D | RNA 10mer duplex with two 2'-5'-linkages | RNA 10mer duplex with two 2'-5'-linkages | X-ray diffraction | 1.55 | 2014-02-12 | ||||
| 8 | 4MSB|1|E+ 4MSB|1|F | RNA 10mer duplex with two 2'-5'-linkages | RNA 10mer duplex with two 2'-5'-linkages | X-ray diffraction | 1.55 | 2014-02-12 |
Release history
| Release | 2.132 | 2.133 | 2.134 | 2.135 | 2.136 | 2.137 | 2.138 | 2.139 | 2.140 | 2.141 | 2.142 | 2.143 | 2.144 | 2.145 | 2.146 | 2.147 | 2.148 | 2.149 | 2.150 | 2.151 | 2.152 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2017-06-21 | 2017-06-24 | 2017-06-28 | 2017-07-04 | 2017-07-10 | 2017-07-15 | 2017-07-26 | 2017-07-31 | 2017-08-05 | 2017-08-12 | 2017-08-19 | 2017-08-26 | 2017-09-03 | 2017-09-09 | 2017-09-16 | 2017-09-23 | 2017-09-30 | 2017-10-07 | 2017-10-14 | 2017-10-21 | 2017-10-28 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_87052.1 | NR_4.0_47763.1 | 2.132 | (8) 5TDJ|1|B, 4MS9|1|A, 5TDJ|1|A, 4MSR|1|A+4MSR|1|B, 4MSB|1|E+4MSB|1|F, 4MSB|1|C+4MSB|1|D, 5TDK|1|A+5TDK|1|B, 4MSB|1|A+4MSB|1|B | (0) | (6) 100D|1|A+100D|1|B, 393D|1|B, 161D|1|A, 161D|1|B, 393D|1|A, 394D|1|A+394D|1|B |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_87052.1 | NR_4.0_71188.1 | 2.153 | (8) 4MSB|1|A+4MSB|1|B, 4MSR|1|A+4MSR|1|B, 5TDK|1|A+5TDK|1|B, 5TDJ|1|B, 4MSB|1|E+4MSB|1|F, 4MS9|1|A, 5TDJ|1|A, 4MSB|1|C+4MSB|1|D | (0) | (6) 394D|1|A+394D|1|B, 393D|1|A, 161D|1|A, 393D|1|B, 161D|1|B, 100D|1|A+100D|1|B |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4MSR|1|A+4MSR|1|B | RNA 10mer duplex with six 2'-5'-linkages | X-RAY DIFFRACTION | 1.2 | 12 |
| 2 | 5TDK|1|A+5TDK|1|B | RNA decamer duplex with eight 2'-5'-linkages | X-RAY DIFFRACTION | 1.43 | 10 |
| 3 | 4MSB|1|A+4MSB|1|B | RNA 10mer duplex with two 2'-5'-linkages | X-RAY DIFFRACTION | 1.55 | 10 |
| 4 | 4MSB|1|C+4MSB|1|D | RNA 10mer duplex with two 2'-5'-linkages | X-RAY DIFFRACTION | 1.55 | 10 |
| 5 | 5TDJ|1|B | RNA decamer duplex with four 2'-5'-linkages | X-RAY DIFFRACTION | 1.5 | 10 |
| 6 | 5TDJ|1|A | RNA decamer duplex with four 2'-5'-linkages | X-RAY DIFFRACTION | 1.5 | 10 |
| 7 | 4MS9|1|A | Native RNA-10mer Structure: ccggcgccgg | X-RAY DIFFRACTION | 1.32 | 10 |
| 8 | 4MSB|1|E+4MSB|1|F | RNA 10mer duplex with two 2'-5'-linkages | X-RAY DIFFRACTION | 1.55 | 10 |