Equivalence class NR_4.0_87323.3 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7S3H|1|R (rep) | Single-guide RNA | Streptococcus pyogenes | Cas9:sgRNA:DNA (S. pyogenes) with 0 RNA:DNA base pairs, open-protein/linear-DNA conformation | Electron microscopy | 2.5 | 2022-04-20 | |||
| 2 | 8YGJ|1|B | RNA (137-MER) | Streptococcus pyogenes | SpCas9-MMLV RT-pegRNA-target DNA complex (elongation 28-nt) | Electron microscopy | 3.2 | 2024-06-05 | |||
| 3 | 8WUS|1|B | RNA (115-MER) | Streptococcus pyogenes | SpCas9-MMLV RT-pegRNA-target DNA complex (termination) | Electron microscopy | 2.9 | 2024-06-05 | |||
| 4 | 8G1I|1|B | sgRNA | Streptococcus pyogenes | SpCas9 with sgRNA and target DNA | Electron microscopy | 3.12 | 2023-05-17 | |||
| 5 | 8T6O|1|B | gRNA | Streptococcus pyogenes | SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 0 bp R-loop | Electron microscopy | 3.1 | 2024-05-01 | |||
| 6 | 7S36|1|R | Single-guide RNA | Streptococcus pyogenes | Cas9:sgRNA:DNA (S. pyogenes) with 0 RNA:DNA base pairs, closed-protein/bent-DNA conformation | Electron microscopy | 3.2 | 2022-04-20 | |||
| 7 | 7S38|1|R | Single-guide RNA | Streptococcus pyogenes | Cas9:sgRNA:DNA (S. pyogenes) forming a 3-base-pair R-loop | Electron microscopy | 3.3 | 2022-04-20 | |||
| 8 | 7S37|1|R | Single-guide RNA | Streptococcus pyogenes | Cas9:sgRNA (S. pyogenes) in the open-protein conformation | Electron microscopy | 3.2 | 2022-04-20 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7S37|1|R | Cas9:sgRNA (S. pyogenes) in the open-protein conformation | ELECTRON MICROSCOPY | 3.2 | 46 |
| 2 | 7S3H|1|R | Cas9:sgRNA:DNA (S. pyogenes) with 0 RNA:DNA base pairs, open-protein/linear-DNA conformation | ELECTRON MICROSCOPY | 2.5 | 30 |
| 3 | 7S38|1|R | Cas9:sgRNA:DNA (S. pyogenes) forming a 3-base-pair R-loop | ELECTRON MICROSCOPY | 3.3 | 87 |
| 4 | 7S36|1|R | Cas9:sgRNA:DNA (S. pyogenes) with 0 RNA:DNA base pairs, closed-protein/bent-DNA conformation | ELECTRON MICROSCOPY | 3.2 | 87 |
| 5 | 8T6O|1|B | SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 0 bp R-loop | ELECTRON MICROSCOPY | 3.1 | 87 |
| 6 | 8WUS|1|B | SpCas9-MMLV RT-pegRNA-target DNA complex (termination) | ELECTRON MICROSCOPY | 2.9 | 115 |
| 7 | 8YGJ|1|B | SpCas9-MMLV RT-pegRNA-target DNA complex (elongation 28-nt) | ELECTRON MICROSCOPY | 3.2 | 136 |
| 8 | 8G1I|1|B | SpCas9 with sgRNA and target DNA | ELECTRON MICROSCOPY | 3.12 | 98 |
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