#IFECompound(s)RNA source organismTitleMethodResolutionDate
15D8T|1|A+ 5D8T|1|B (rep)RNA oligonucleotide containing (S)-C5'-Me-2'-FURNA octamer containing (S)-5' methyl, 2'-F U.X-RAY DIFFRACTION1.22016-06-29
26CY2|1|A+ 6CY2|1|BRNA (5'-R(*(CBV)P*GP*AP*AP*(UOA)P*UP*CP*G)-3')RNA octamer containing 2'-OMe, 4'Calpha-OMe U.X-RAY DIFFRACTION1.42018-08-29
36CXZ|1|A+ 6CXZ|1|BRNA (5'-R(*CP*GP*AP*AP*(U4M)P*UP*CP*G)-3')RNA octamer containing 2'-F, 4'-Calpha-Me U.X-RAY DIFFRACTION1.52018-08-29
45VR4|1|C+ 5VR4|1|DRNA (5'-R(*CP*GP*AP*AP*(UMO)P*UP*CP*G)-3')RNA octamer containing 2'-F-4'-OMe U.X-RAY DIFFRACTION1.52017-10-04
55VR4|1|A+ 5VR4|1|BRNA (5'-R(*CP*GP*AP*AP*(UMO)P*UP*CP*G)-3')RNA octamer containing 2'-F-4'-OMe U.X-RAY DIFFRACTION1.52017-10-04
66CY4|1|C+ 6CY4|1|DRNA (5'-R(*(CBV)P*GP*AP*AP*(UOB)P*UP*CP*G)-3')RNA octamer containing 2'-OMe, 4'- Cbeta-OMe U.X-RAY DIFFRACTION1.852018-08-29
76CY4|1|A+ 6CY4|1|BRNA (5'-R(*(CBV)P*GP*AP*AP*(UOB)P*UP*CP*G)-3')RNA octamer containing 2'-OMe, 4'- Cbeta-OMe U.X-RAY DIFFRACTION1.852018-08-29
86CY4|1|E+ 6CY4|1|FRNA (5'-R(*(CBV)P*GP*AP*AP*(UOB)P*UP*CP*G)-3')RNA octamer containing 2'-OMe, 4'- Cbeta-OMe U.X-RAY DIFFRACTION1.852018-08-29
96CY4|1|G+ 6CY4|1|HRNA (5'-R(*(CBV)P*GP*AP*AP*(UOB)P*UP*CP*G)-3')RNA octamer containing 2'-OMe, 4'- Cbeta-OMe U.X-RAY DIFFRACTION1.852018-08-29
105DER|1|A+ 5DER|1|BRNA oligonucleotide containing (R)-C5'-Me-2'-FURNA oligonucleotide containing (R)-C5'-ME-2'F UX-RAY DIFFRACTION1.82016-06-29
115DER|1|C+ 5DER|1|DRNA oligonucleotide containing (R)-C5'-Me-2'-FURNA oligonucleotide containing (R)-C5'-ME-2'F UX-RAY DIFFRACTION1.82016-06-29
126CY0|1|A+ 6CY0|1|BRNA (5'-R(*(CBV)P*GP*AP*AP*(UFB)P*UP*CP*G)-3')RNA octamer containing 2'-F, 4'-Cbeta-OMe U.X-RAY DIFFRACTION2.42018-08-29
136CY0|1|C+ 6CY0|1|DRNA (5'-R(*(CBV)P*GP*AP*AP*(UFB)P*UP*CP*G)-3')RNA octamer containing 2'-F, 4'-Cbeta-OMe U.X-RAY DIFFRACTION2.42018-08-29
146CY0|1|E+ 6CY0|1|FRNA (5'-R(*(CBV)P*GP*AP*AP*(UFB)P*UP*CP*G)-3')RNA octamer containing 2'-F, 4'-Cbeta-OMe U.X-RAY DIFFRACTION2.42018-08-29
156CY0|1|G+ 6CY0|1|HRNA (5'-R(*(CBV)P*GP*AP*AP*(UFB)P*UP*CP*G)-3')RNA octamer containing 2'-F, 4'-Cbeta-OMe U.X-RAY DIFFRACTION2.42018-08-29

Release history

Release3.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.95
Date2019-05-242019-05-312019-06-072019-06-142019-06-212019-06-282019-07-052019-07-122019-07-192019-07-262019-08-022019-08-092019-08-162019-08-232019-08-282019-09-042019-09-112019-09-192019-09-252019-10-032019-10-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_87665.1NR_4.0_07963.13.75(1) 6CY4|1|C+6CY4|1|D(14) 6CY4|1|G+6CY4|1|H, 6CY4|1|E+6CY4|1|F, 6CY4|1|A+6CY4|1|B, 6CY2|1|A+6CY2|1|B, 6CY0|1|G+6CY0|1|H, 6CY0|1|E+6CY0|1|F, 6CY0|1|C+6CY0|1|D, 6CY0|1|A+6CY0|1|B, 6CXZ|1|A+6CXZ|1|B, 5VR4|1|C+5VR4|1|D, 5VR4|1|A+5VR4|1|B, 5DER|1|C+5DER|1|D, 5DER|1|A+5DER|1|B, 5D8T|1|A+5D8T|1|B(0)
NR_4.0_87665.1NR_4.0_31969.13.75(1) 6CY2|1|A+6CY2|1|B(14) 6CY4|1|G+6CY4|1|H, 6CY4|1|E+6CY4|1|F, 6CY4|1|C+6CY4|1|D, 6CY4|1|A+6CY4|1|B, 6CY0|1|G+6CY0|1|H, 6CY0|1|E+6CY0|1|F, 6CY0|1|C+6CY0|1|D, 6CY0|1|A+6CY0|1|B, 6CXZ|1|A+6CXZ|1|B, 5VR4|1|C+5VR4|1|D, 5VR4|1|A+5VR4|1|B, 5DER|1|C+5DER|1|D, 5DER|1|A+5DER|1|B, 5D8T|1|A+5D8T|1|B(0)
NR_4.0_87665.1NR_4.0_44426.13.75(1) 6CY4|1|A+6CY4|1|B(14) 5D8T|1|A+5D8T|1|B, 6CY4|1|G+6CY4|1|H, 6CY4|1|E+6CY4|1|F, 6CY4|1|C+6CY4|1|D, 6CY2|1|A+6CY2|1|B, 6CY0|1|G+6CY0|1|H, 6CY0|1|E+6CY0|1|F, 6CY0|1|C+6CY0|1|D, 6CY0|1|A+6CY0|1|B, 6CXZ|1|A+6CXZ|1|B, 5VR4|1|C+5VR4|1|D, 5VR4|1|A+5VR4|1|B, 5DER|1|C+5DER|1|D, 5DER|1|A+5DER|1|B(0)
NR_4.0_87665.1NR_4.0_73564.13.75(6) 6CY4|1|G+6CY4|1|H, 6CY0|1|E+6CY0|1|F, 6CY0|1|C+6CY0|1|D, 6CY4|1|E+6CY4|1|F, 6CY0|1|A+6CY0|1|B, 6CY0|1|G+6CY0|1|H(9) 6CXZ|1|A+6CXZ|1|B, 5D8T|1|A+5D8T|1|B, 5VR4|1|C+5VR4|1|D, 6CY4|1|C+6CY4|1|D, 5VR4|1|A+5VR4|1|B, 6CY4|1|A+6CY4|1|B, 5DER|1|C+5DER|1|D, 6CY2|1|A+6CY2|1|B, 5DER|1|A+5DER|1|B(0)
NR_4.0_87665.1NR_4.0_86375.13.75(1) 6CXZ|1|A+6CXZ|1|B(14) 6CY4|1|G+6CY4|1|H, 6CY4|1|E+6CY4|1|F, 6CY4|1|C+6CY4|1|D, 6CY4|1|A+6CY4|1|B, 6CY2|1|A+6CY2|1|B, 6CY0|1|G+6CY0|1|H, 6CY0|1|E+6CY0|1|F, 6CY0|1|C+6CY0|1|D, 6CY0|1|A+6CY0|1|B, 5VR4|1|C+5VR4|1|D, 5VR4|1|A+5VR4|1|B, 5DER|1|C+5DER|1|D, 5DER|1|A+5DER|1|B, 5D8T|1|A+5D8T|1|B(0)
NR_4.0_87665.1NR_4.0_97273.13.75(5) 5VR4|1|C+5VR4|1|D, 5DER|1|A+5DER|1|B, 5D8T|1|A+5D8T|1|B, 5VR4|1|A+5VR4|1|B, 5DER|1|C+5DER|1|D(10) 6CY4|1|A+6CY4|1|B, 6CY0|1|G+6CY0|1|H, 6CY2|1|A+6CY2|1|B, 6CY0|1|E+6CY0|1|F, 6CY0|1|C+6CY0|1|D, 6CY0|1|A+6CY0|1|B, 6CXZ|1|A+6CXZ|1|B, 6CY4|1|G+6CY4|1|H, 6CY4|1|E+6CY4|1|F, 6CY4|1|C+6CY4|1|D(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16CY0|1|A+6CY0|1|BRNA octamer containing 2'-F, 4'-Cbeta-OMe U.X-RAY DIFFRACTION2.46
26CY0|1|G+6CY0|1|HRNA octamer containing 2'-F, 4'-Cbeta-OMe U.X-RAY DIFFRACTION2.46
36CY0|1|E+6CY0|1|FRNA octamer containing 2'-F, 4'-Cbeta-OMe U.X-RAY DIFFRACTION2.46
46CY0|1|C+6CY0|1|DRNA octamer containing 2'-F, 4'-Cbeta-OMe U.X-RAY DIFFRACTION2.46
56CY4|1|E+6CY4|1|FRNA octamer containing 2'-OMe, 4'- Cbeta-OMe U.X-RAY DIFFRACTION1.856
66CY4|1|G+6CY4|1|HRNA octamer containing 2'-OMe, 4'- Cbeta-OMe U.X-RAY DIFFRACTION1.856
76CY4|1|C+6CY4|1|DRNA octamer containing 2'-OMe, 4'- Cbeta-OMe U.X-RAY DIFFRACTION1.856
86CY4|1|A+6CY4|1|BRNA octamer containing 2'-OMe, 4'- Cbeta-OMe U.X-RAY DIFFRACTION1.856
95DER|1|C+5DER|1|DRNA oligonucleotide containing (R)-C5'-ME-2'F UX-RAY DIFFRACTION1.87
105DER|1|A+5DER|1|BRNA oligonucleotide containing (R)-C5'-ME-2'F UX-RAY DIFFRACTION1.87
115VR4|1|C+5VR4|1|DRNA octamer containing 2'-F-4'-OMe U.X-RAY DIFFRACTION1.57
125VR4|1|A+5VR4|1|BRNA octamer containing 2'-F-4'-OMe U.X-RAY DIFFRACTION1.57
136CY2|1|A+6CY2|1|BRNA octamer containing 2'-OMe, 4'Calpha-OMe U.X-RAY DIFFRACTION1.46
146CXZ|1|A+6CXZ|1|BRNA octamer containing 2'-F, 4'-Calpha-Me U.X-RAY DIFFRACTION1.59
155D8T|1|A+5D8T|1|BRNA octamer containing (S)-5' methyl, 2'-F U.X-RAY DIFFRACTION1.26