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Equivalence class NR_4.0_88517.4 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14JNG|1|L (rep)RNA (42-MER)Schmallenberg virus nucleoprotein-RNA complexX-ray diffraction2.122013-07-31
25UK4|1|xRNA (45-MER)Vicugna pacosVESICULAR STOMATITS VIRUS N PROTEIN IN COMPLEX WITH INHIBITORY NANOBODY 1307X-ray diffraction3.22017-04-19
35UK4|1|vRNA (45-MER)Vicugna pacosVESICULAR STOMATITS VIRUS N PROTEIN IN COMPLEX WITH INHIBITORY NANOBODY 1307X-ray diffraction3.22017-04-19
45UK4|1|wRNA (45-MER)Vicugna pacosVESICULAR STOMATITS VIRUS N PROTEIN IN COMPLEX WITH INHIBITORY NANOBODY 1307X-ray diffraction3.22017-04-19
55UK4|1|uRNA (45-MER)Vicugna pacosVESICULAR STOMATITS VIRUS N PROTEIN IN COMPLEX WITH INHIBITORY NANOBODY 1307X-ray diffraction3.22017-04-19
64BHH|1|RPOLY-URIDINE 45-MERsynthetic constructCrystal structure of tetramer of La Crosse virus nucleoprotein in complex with ssRNAX-ray diffraction3.42013-04-24
74J1G|1|ERNA (45-MER)Leanyer orthobunyavirus nucleoprotein-ssRNA complexX-ray diffraction2.792013-04-10
83ZLA|1|IRNAEscherichia coliCrystal structure of the nucleocapsid protein from Bunyamwera virus bound to RNAX-ray diffraction3.22013-05-01
93ZLA|1|JRNAEscherichia coliCrystal structure of the nucleocapsid protein from Bunyamwera virus bound to RNAX-ray diffraction3.22013-05-01
103PU4|1|RRNA (45-MER)synthetic constructCrystal Structure of a vesicular stomatitis virus nucleocapsid-polyU complexX-ray diffraction32011-01-12
112GIC|1|R45-MERCrystal Structure of a vesicular stomatitis virus nucleocapsid-RNA complexX-ray diffraction2.922006-08-22
123HHZ|1|RRNA (45-MER)Escherichia coliComplex of the vesicular stomatitis virus nucleocapsid and the nucleocapsid-binding domain of the phosphoproteinX-ray diffraction3.52009-07-28
136BJY|1|RRNA (45-MER)Indiana vesiculovirusVSV Nucleocapsid with Polyamide BoundX-ray diffraction3.462018-02-28
146H25|1|RU44 ssRNAsynthetic constructHuman nuclear RNA exosome EXO-10-MPP6 complexElectron microscopy3.82018-08-15

Release history

Release3.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.953.963.973.98
Date2018-08-172018-08-242018-08-312018-09-072018-09-142018-09-212018-09-282018-10-052018-10-122018-10-192018-10-262018-11-022018-11-092018-11-162018-11-232018-11-302018-12-072018-12-142018-12-212018-12-282019-01-042019-01-112019-01-182019-01-252019-02-012019-02-082019-02-152019-02-222019-03-012019-03-082019-03-152019-03-222019-03-292019-04-052019-04-122019-04-192019-04-262019-05-032019-05-102019-05-172019-05-242019-05-312019-06-072019-06-142019-06-212019-06-282019-07-052019-07-122019-07-192019-07-262019-08-022019-08-092019-08-162019-08-232019-08-282019-09-042019-09-112019-09-192019-09-252019-10-032019-10-092019-10-162019-10-232019-10-30

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_88517.4NR_4.0_88517.33.35(13) 5UK4|1|w, 5UK4|1|v, 5UK4|1|u, 4JNG|1|L, 4J1G|1|E, 4BHH|1|R, 3ZLA|1|J, 3ZLA|1|I, 3PU4|1|R, 3HHZ|1|R, 2GIC|1|R, 6BJY|1|R, 5UK4|1|x(1) 6H25|1|R(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_88517.4NR_4.0_10203.13.99(3) 2GIC|1|R, 6BJY|1|R, 3HHZ|1|R(11) 5UK4|1|u, 3PU4|1|R, 4J1G|1|E, 5UK4|1|x, 5UK4|1|w, 3ZLA|1|J, 3ZLA|1|I, 6H25|1|R, 4BHH|1|R, 4JNG|1|L, 5UK4|1|v(0)
NR_4.0_88517.4NR_4.0_28720.13.99(1) 4J1G|1|E(13) 4BHH|1|R, 5UK4|1|u, 2GIC|1|R, 5UK4|1|w, 3PU4|1|R, 6BJY|1|R, 3ZLA|1|J, 4JNG|1|L, 5UK4|1|v, 3HHZ|1|R, 5UK4|1|x, 3ZLA|1|I, 6H25|1|R(0)
NR_4.0_88517.4NR_4.0_38259.13.99(5) 3PU4|1|R, 5UK4|1|v, 5UK4|1|x, 5UK4|1|u, 5UK4|1|w(9) 6H25|1|R, 4JNG|1|L, 4BHH|1|R, 3HHZ|1|R, 3ZLA|1|J, 4J1G|1|E, 6BJY|1|R, 2GIC|1|R, 3ZLA|1|I(0)
NR_4.0_88517.4NR_4.0_58017.13.99(1) 4JNG|1|L(13) 6BJY|1|R, 3ZLA|1|J, 4J1G|1|E, 5UK4|1|v, 3HHZ|1|R, 5UK4|1|x, 3ZLA|1|I, 6H25|1|R, 4BHH|1|R, 5UK4|1|u, 2GIC|1|R, 5UK4|1|w, 3PU4|1|R(0)
NR_4.0_88517.4NR_4.0_77057.13.99(1) 4BHH|1|R(13) 5UK4|1|u, 2GIC|1|R, 5UK4|1|w, 3PU4|1|R, 6BJY|1|R, 3ZLA|1|J, 4JNG|1|L, 5UK4|1|v, 3HHZ|1|R, 5UK4|1|x, 3ZLA|1|I, 6H25|1|R, 4J1G|1|E(0)
NR_4.0_88517.4NR_4.0_79533.13.99(2) 3ZLA|1|I, 3ZLA|1|J(12) 3HHZ|1|R, 4JNG|1|L, 6BJY|1|R, 4BHH|1|R, 5UK4|1|v, 2GIC|1|R, 5UK4|1|x, 3PU4|1|R, 6H25|1|R, 4J1G|1|E, 5UK4|1|u, 5UK4|1|w(0)
NR_4.0_88517.4NR_4.0_84781.13.99(1) 6H25|1|R(13) 5UK4|1|v, 3PU4|1|R, 5UK4|1|x, 3ZLA|1|J, 4J1G|1|E, 5UK4|1|u, 3HHZ|1|R, 5UK4|1|w, 3ZLA|1|I, 6BJY|1|R, 4BHH|1|R, 4JNG|1|L, 2GIC|1|R(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
1
6BJY|1|R		VSV Nucleocapsid with Polyamide BoundX-RAY DIFFRACTION3.4645
2
2GIC|1|R		Crystal Structure of a vesicular stomatitis virus nucleocapsid-RNA complexX-RAY DIFFRACTION2.9245
3
3HHZ|1|R		Complex of the vesicular stomatitis virus nucleocapsid and the nucleocapsid-binding domain of the phosphoproteinX-RAY DIFFRACTION3.545
4
5UK4|1|u		VESICULAR STOMATITS VIRUS N PROTEIN IN COMPLEX WITH INHIBITORY NANOBODY 1307X-RAY DIFFRACTION3.245
5
5UK4|1|v		VESICULAR STOMATITS VIRUS N PROTEIN IN COMPLEX WITH INHIBITORY NANOBODY 1307X-RAY DIFFRACTION3.245
6
5UK4|1|w		VESICULAR STOMATITS VIRUS N PROTEIN IN COMPLEX WITH INHIBITORY NANOBODY 1307X-RAY DIFFRACTION3.245
7
5UK4|1|x		VESICULAR STOMATITS VIRUS N PROTEIN IN COMPLEX WITH INHIBITORY NANOBODY 1307X-RAY DIFFRACTION3.245
8
3PU4|1|R		Crystal Structure of a vesicular stomatitis virus nucleocapsid-polyU complexX-RAY DIFFRACTION345
9
6H25|1|R		Human nuclear RNA exosome EXO-10-MPP6 complexELECTRON MICROSCOPY3.86
10
4J1G|1|E		Leanyer orthobunyavirus nucleoprotein-ssRNA complexX-RAY DIFFRACTION2.7945
11
3ZLA|1|I		Crystal structure of the nucleocapsid protein from Bunyamwera virus bound to RNAX-RAY DIFFRACTION3.244
12
3ZLA|1|J		Crystal structure of the nucleocapsid protein from Bunyamwera virus bound to RNAX-RAY DIFFRACTION3.244
13
4JNG|1|L		Schmallenberg virus nucleoprotein-RNA complexX-RAY DIFFRACTION2.1242
14
4BHH|1|R		Crystal structure of tetramer of La Crosse virus nucleoprotein in complex with ssRNAX-RAY DIFFRACTION3.444

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