#IFECompound(s)RNA source organismTitleMethodResolutionDate
14IOA|1|X (rep)23S ribosomal RNADeinococcus radioduransCrystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION3.22013-03-06
24IO9|1|X23S ribosomal RNADeinococcus radioduransCrystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION3.22013-03-06
35JVG|1|X23S ribosomal RNADeinococcus radioduransThe large ribosomal subunit from Deinococcus radiodurans in complex with avilamycinX-RAY DIFFRACTION3.432016-11-09
45DM6|1|X23S ribosomal RNADeinococcus radioduransCrystal structure of the 50S ribosomal subunit from Deinococcus radioduransX-RAY DIFFRACTION2.92015-11-11
55JVH|1|X23S ribosomal RNADeinococcus radioduransThe crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicinX-RAY DIFFRACTION3.582016-11-09
64IOC|1|X23S ribosomal RNADeinococcus radioduransCrystal structure of compound 4f bound to large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION3.62013-03-06
74U67|1|X23s RNADeinococcus radioduransCrystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22X-RAY DIFFRACTION3.652015-08-05
84WFN|1|X23S ribosomal RNADeinococcus radioduransCrystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22 in complex with erythromycinX-RAY DIFFRACTION3.542015-12-23
93PIO|1|XRIBOSOMAL 23S RNADeinococcus radioduransCrystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-RAY DIFFRACTION3.252011-02-23
105DM7|1|X23S ribosomal RNADeinococcus radioduransCrystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with hygromycin AX-RAY DIFFRACTION32015-11-11
113PIP|1|XRIBOSOMAL 23S RNADeinococcus radioduransCrystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-RAY DIFFRACTION3.452011-02-23
123DLL|1|XrRNA-23S ribosomal RNADeinococcus radioduransThe oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA positioningX-RAY DIFFRACTION3.52008-09-16
131OND|1|023S RIBOSOMAL RNADeinococcus radioduransTHE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTICX-RAY DIFFRACTION3.42003-04-15
142AAR|1|023S ribosomal RNADeinococcus radioduransStructure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.X-RAY DIFFRACTION3.52005-08-23
151Y69|1|023S ribosomal RNADeinococcus radioduransRRF domain I in complex with the 50S ribosomal subunit from Deinococcus radioduransX-RAY DIFFRACTION3.332005-03-01
163JQ4|1|A23S ribosomal RNADeinococcus radioduransThe structure of the complex of the large ribosomal subunit from D. Radiodurans with the antibiotic lankacidinX-RAY DIFFRACTION3.522010-09-08
173FWO|1|A23S RIBOSOMAL RNADeinococcus radioduransThe large ribosomal subunit from Deinococcus radiodurans complexed with MethymycinX-RAY DIFFRACTION3.712010-01-19
182ZJR|1|Xribosomal 23S RNADeinococcus radioduransRefined native structure of the large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION2.912008-06-17
193CF5|1|XRRNA-23S RIBOSOMAL RNADeinococcus radioduransThiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radioduransX-RAY DIFFRACTION3.32008-06-17
202ZJQ|1|Xribosomal 23S RNADeinococcus radioduransInteraction of L7 with L11 induced by Microccocin binding to the Deinococcus radiodurans 50S subunitX-RAY DIFFRACTION3.32008-06-17
212OGM|1|023S ribosomal RNADeinococcus radioduransThe crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative SB-571519X-RAY DIFFRACTION3.52007-05-01
222ZJP|1|XRIBOSOMAL 23S RNADeinococcus radioduransThiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radioduransX-RAY DIFFRACTION3.72008-06-17
232OGO|1|023S ribosomal RNADeinococcus radioduransThe crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)X-RAY DIFFRACTION3.662007-05-01
242OGN|1|023S ribosomal RNADeinococcus radioduransThe crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative SB-280080X-RAY DIFFRACTION3.562007-05-01
255DM8|1|XDeinococcus radiodurans R1 chromosome 1, complete sequenceCrystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycinX-RAY DIFFRACTION3.12016-10-05
261JZX|1|A23S rRNADeinococcus radioduransStructural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in EubacteriaX-RAY DIFFRACTION3.12001-10-26
271NKW|1|023S ribosomal RNADeinococcus radioduransCrystal Structure Of The Large Ribosomal Subunit From Deinococcus RadioduransX-RAY DIFFRACTION3.12003-02-11
281NWY|1|023S RIBOSOMAL RRNADeinococcus radioduransCOMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCINX-RAY DIFFRACTION3.32003-03-18
291NJP|1|023S ribosomal RNADeinococcus radioduransThe crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)X-RAY DIFFRACTION3.52003-02-11
301NWX|1|023S RIBOSOMAL RNADeinococcus radioduransCOMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773X-RAY DIFFRACTION3.52003-03-18
311J5A|1|A23S RRNADeinococcus radioduransSTRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIAX-RAY DIFFRACTION3.52002-03-08
321JZY|1|A23S rRNADeinococcus radioduransStructural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in EubacteriaX-RAY DIFFRACTION3.52001-10-26
331K01|1|A23S rRNADeinococcus radioduransStructural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in EubacteriaX-RAY DIFFRACTION3.52001-10-26
341NJM|1|023S ribosomal RNADeinococcus radioduransThe crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycinX-RAY DIFFRACTION3.62003-02-11
351NJN|1|023S ribosomal RNADeinococcus radioduransThe crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycinX-RAY DIFFRACTION3.72003-02-11
361NJO|1|023S ribosomal RNA, RNA ACC(Puromycin)Deinococcus radioduransThe crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)X-RAY DIFFRACTION3.72003-02-11
371SM1|1|023S RIBOSOMAL RNADeinococcus radioduransCOMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTINX-RAY DIFFRACTION3.422004-08-03
381P9X|1|023S RIBOSOMAL RNADeinococcus radioduransTHE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TELITHROMYCIN KETOLIDE ANTIBIOTICX-RAY DIFFRACTION3.42003-08-05
391JZZ|1|A23S rRNADeinococcus radioduransStructural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in EubacteriaX-RAY DIFFRACTION3.82001-10-26
401Z58|1|223S RIBOSOMAL RNADeinococcus radioduransCrystal structure of a complex of the ribosome large subunit with rapamycinX-RAY DIFFRACTION3.82005-06-28
412D3O|1|023S RIBOSOMAL RNADeinococcus radioduransStructure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radioduransX-RAY DIFFRACTION3.352005-12-06
421XBP|1|023S RIBOSOMAL RNADeinococcus radioduransInhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with TiamulinX-RAY DIFFRACTION3.52005-03-01
432O44|1|A23S rRNADeinococcus radioduransStructure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycinX-RAY DIFFRACTION3.32007-12-04
442O43|1|A23S rRNADeinococcus radioduransStructure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide erythromycylamineX-RAY DIFFRACTION3.62007-12-04
452O45|1|A23S rRNADeinococcus radioduransStructure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874X-RAY DIFFRACTION3.62007-12-04

Release history

Release3.03.13.23.33.43.53.63.73.83.93.103.113.123.133.143.153.163.17
Date2017-12-152017-12-222017-12-292018-01-052018-01-122018-01-192018-01-262018-02-022018-02-092018-02-162018-02-232018-03-012018-03-082018-03-152018-03-222018-03-292018-04-062018-04-13

Children

This classDescendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
12O45|1|AStructure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874X-RAY DIFFRACTION3.62766
23JQ4|1|AThe structure of the complex of the large ribosomal subunit from D. Radiodurans with the antibiotic lankacidinX-RAY DIFFRACTION3.522765
33FWO|1|AThe large ribosomal subunit from Deinococcus radiodurans complexed with MethymycinX-RAY DIFFRACTION3.712765
42O44|1|AStructure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycinX-RAY DIFFRACTION3.32766
52O43|1|AStructure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide erythromycylamineX-RAY DIFFRACTION3.62766
62AAR|1|0Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.X-RAY DIFFRACTION3.52766
72OGO|1|0The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)X-RAY DIFFRACTION3.662765
82OGM|1|0The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative SB-571519X-RAY DIFFRACTION3.52766
92OGN|1|0The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative SB-280080X-RAY DIFFRACTION3.562766
101P9X|1|0THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TELITHROMYCIN KETOLIDE ANTIBIOTICX-RAY DIFFRACTION3.42738
111SM1|1|0COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTINX-RAY DIFFRACTION3.422766
121XBP|1|0Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with TiamulinX-RAY DIFFRACTION3.52766
131OND|1|0THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTICX-RAY DIFFRACTION3.42765
141NKW|1|0Crystal Structure Of The Large Ribosomal Subunit From Deinococcus RadioduransX-RAY DIFFRACTION3.12766
151NWX|1|0COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773X-RAY DIFFRACTION3.52766
161NWY|1|0COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCINX-RAY DIFFRACTION3.32766
171NJP|1|0The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)X-RAY DIFFRACTION3.52766
181NJO|1|0The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)X-RAY DIFFRACTION3.72766
191NJN|1|0The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycinX-RAY DIFFRACTION3.72766
201NJM|1|0The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycinX-RAY DIFFRACTION3.62766
211Z58|1|2Crystal structure of a complex of the ribosome large subunit with rapamycinX-RAY DIFFRACTION3.82766
221J5A|1|ASTRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIAX-RAY DIFFRACTION3.52774
231JZZ|1|AStructural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in EubacteriaX-RAY DIFFRACTION3.82774
241JZY|1|AStructural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in EubacteriaX-RAY DIFFRACTION3.52774
251JZX|1|AStructural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in EubacteriaX-RAY DIFFRACTION3.12774
261K01|1|AStructural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in EubacteriaX-RAY DIFFRACTION3.52774
271Y69|1|0RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radioduransX-RAY DIFFRACTION3.332766
283PIP|1|XCrystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-RAY DIFFRACTION3.452644
293PIO|1|XCrystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-RAY DIFFRACTION3.252657
302ZJP|1|XThiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radioduransX-RAY DIFFRACTION3.72686
313CF5|1|XThiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radioduransX-RAY DIFFRACTION3.32686
322ZJQ|1|XInteraction of L7 with L11 induced by Microccocin binding to the Deinococcus radiodurans 50S subunitX-RAY DIFFRACTION3.32686
332ZJR|1|XRefined native structure of the large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION2.912686
344IOA|1|XCrystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION3.22686
354IO9|1|XCrystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION3.22686
364IOC|1|XCrystal structure of compound 4f bound to large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION3.62686
375JVH|1|XThe crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicinX-RAY DIFFRACTION3.582658
384WFN|1|XCrystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22 in complex with erythromycinX-RAY DIFFRACTION3.542680
394U67|1|XCrystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22X-RAY DIFFRACTION3.652667
405JVG|1|XThe large ribosomal subunit from Deinococcus radiodurans in complex with avilamycinX-RAY DIFFRACTION3.432711
415DM7|1|XCrystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with hygromycin AX-RAY DIFFRACTION32780
425DM6|1|XCrystal structure of the 50S ribosomal subunit from Deinococcus radioduransX-RAY DIFFRACTION2.92780
435DM8|1|XCrystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycinX-RAY DIFFRACTION3.12780
443DLL|1|XThe oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA positioningX-RAY DIFFRACTION3.52686
452D3O|1|0Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radioduransX-RAY DIFFRACTION3.352802