BGSU RNA Site //

Equivalence class NR_4.0_89698.1 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
14PEI|1|Z (rep)RNA (5'-R(*UP*AP*AP*CP*A)-3')synthetic constructSyntheticDbr1 in complex with synthetic branched RNA analogX-ray diffraction1.952014-08-27
24PEI|1|VRNA (5'-R(*UP*AP*AP*CP*A)-3')synthetic constructSyntheticDbr1 in complex with synthetic branched RNA analogX-ray diffraction1.952014-08-27
34PEI|1|WRNA (5'-R(*UP*AP*AP*CP*A)-3')synthetic constructSyntheticDbr1 in complex with synthetic branched RNA analogX-ray diffraction1.952014-08-27
44PEI|1|XRNA (5'-R(*UP*AP*AP*CP*A)-3')synthetic constructSyntheticDbr1 in complex with synthetic branched RNA analogX-ray diffraction1.952014-08-27
54PEI|1|YRNA (5'-R(*UP*AP*AP*CP*A)-3')synthetic constructSyntheticDbr1 in complex with synthetic branched RNA analogX-ray diffraction1.952014-08-27

Release history

Release2.462.472.482.492.502.512.522.532.542.552.562.572.582.592.602.612.622.632.642.652.662.672.682.692.702.712.722.732.742.752.762.772.782.792.802.812.822.832.842.852.862.872.882.892.902.912.922.932.942.952.962.972.982.992.1002.1012.1022.1032.104
Date2015-10-232015-10-302015-11-062015-11-132015-11-202015-11-272015-12-042015-12-112015-12-182015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-192016-02-262016-03-042016-03-112016-03-182016-03-252016-04-012016-04-082016-04-152016-04-222016-04-292016-05-062016-05-132016-05-202016-05-272016-06-032016-06-102016-06-172016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-262016-09-022016-09-092016-09-162016-09-232016-09-302016-10-072016-10-142016-10-212016-10-282016-11-042016-11-112016-11-182016-11-252016-12-02

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_89698.1NR_all_14061.12.46(1) 4PEI|1|Y(4) 4PEI|1|Z, 4PEI|1|X, 4PEI|1|W, 4PEI|1|V(0)
NR_4.0_89698.1NR_all_61160.12.46(1) 4PEI|1|V(4) 4PEI|1|Z, 4PEI|1|Y, 4PEI|1|X, 4PEI|1|W(0)
NR_4.0_89698.1NR_all_85446.12.46(1) 4PEI|1|W(4) 4PEI|1|Z, 4PEI|1|Y, 4PEI|1|X, 4PEI|1|V(0)
NR_4.0_89698.1NR_all_86831.12.46(2) 4PEI|1|X, 4PEI|1|Z(3) 4PEI|1|V, 4PEI|1|Y, 4PEI|1|W(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_89698.1NR_4.0_25521.12.105(5) 4PEI|1|W, 4PEI|1|Z, 4PEI|1|V, 4PEI|1|Y, 4PEI|1|X(0) (5) 5K77|1|Z, 5K77|1|Y, 5K77|1|X, 5K77|1|W, 5K77|1|V

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14PEI|1|XDbr1 in complex with synthetic branched RNA analogX-RAY DIFFRACTION1.953
24PEI|1|ZDbr1 in complex with synthetic branched RNA analogX-RAY DIFFRACTION1.953
34PEI|1|WDbr1 in complex with synthetic branched RNA analogX-RAY DIFFRACTION1.953
44PEI|1|YDbr1 in complex with synthetic branched RNA analogX-RAY DIFFRACTION1.952
54PEI|1|VDbr1 in complex with synthetic branched RNA analogX-RAY DIFFRACTION1.953