Equivalence class NR_4.0_90506.47 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5TBW|1|1+ 5TBW|1|4 (rep) | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-ray diffraction | 3 | 3307 | 2017-07-26 |
| 2 | 5TBW|1|AR+ 5TBW|1|AT | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-ray diffraction | 3 | 3307 | 2017-07-26 |
| 3 | 4V88|1|A5+ 4V88|1|A8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-ray diffraction | 3 | 3308 | 2014-07-09 |
| 4 | 4V88|1|A1+ 4V88|1|A4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-ray diffraction | 3 | 3307 | 2014-07-09 |
| 5 | 7OSA|1|25S+ 7OSA|1|58S | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-ray diffraction | 3 | 3338 | 2021-12-08 |
| 6 | 5I4L|1|5+ 5I4L|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 3308 | 2016-06-22 |
| 7 | 5I4L|1|1+ 5I4L|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 3307 | 2016-06-22 |
| 8 | 5MEI|1|AR+ 5MEI|1|AT | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Agelastatin A bound to the 80S ribosome | X-ray diffraction | 3.5 | 3307 | 2017-06-28 |
| 9 | 5MEI|1|1+ 5MEI|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Agelastatin A bound to the 80S ribosome | X-ray diffraction | 3.5 | 3307 | 2017-06-28 |
| 10 | 6HHQ|1|AR+ 6HHQ|1|AT | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of compound C45 bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 3305 | 2019-02-20 |
| 11 | 6HHQ|1|1+ 6HHQ|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of compound C45 bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 3307 | 2019-02-20 |
| 12 | 5OBM|1|5+ 5OBM|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Gentamicin bound to the yeast 80S ribosome | X-ray diffraction | 3.4 | 3292 | 2017-12-13 |
| 13 | 5OBM|1|1+ 5OBM|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Gentamicin bound to the yeast 80S ribosome | X-ray diffraction | 3.4 | 3256 | 2017-12-13 |
| 14 | 5LYB|1|5+ 5LYB|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA, aminoacyl-tRNA fragment ACCPmn | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-ray diffraction | 3.25 | 3308 | 2016-11-23 |
| 15 | 5NDV|1|1+ 5NDV|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Paromomycin bound to the yeast 80S ribosome | X-ray diffraction | 3.3 | 3235 | 2017-12-13 |
| 16 | 5ON6|1|1+ 5ON6|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of haemanthamine bound to the 80S ribosome | X-ray diffraction | 3.1 | 3307 | 2018-02-28 |
| 17 | 5LYB|1|1+ 5LYB|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA, aminoacyl-tRNA fragment ACCPmn | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-ray diffraction | 3.25 | 3307 | 2016-11-23 |
| 18 | 5ON6|1|AR+ 5ON6|1|AT | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of haemanthamine bound to the 80S ribosome | X-ray diffraction | 3.1 | 3307 | 2018-02-28 |
| 19 | 7OSM|1|25S+ 7OSM|1|58S | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-ray diffraction | 3 | 3320 | 2021-12-08 |
| 20 | 5NDV|1|5+ 5NDV|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Paromomycin bound to the yeast 80S ribosome | X-ray diffraction | 3.3 | 3245 | 2017-12-13 |
| 21 | 5NDW|1|1+ 5NDW|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome | X-ray diffraction | 3.7 | 3248 | 2017-12-13 |
| 22 | 5NDW|1|5+ 5NDW|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome | X-ray diffraction | 3.7 | 3238 | 2017-12-13 |
| 23 | 5NDG|1|5+ 5NDG|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of geneticin (G418) bound to the yeast 80S ribosome | X-ray diffraction | 3.7 | 3284 | 2017-12-13 |
| 24 | 5NDG|1|1+ 5NDG|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of geneticin (G418) bound to the yeast 80S ribosome | X-ray diffraction | 3.7 | 3236 | 2017-12-13 |
| 25 | 5TGM|1|1+ 5TGM|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA, Peptidyl-tRNA analog ACCA-Leu-Phe | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.5 | 3307 | 2017-01-18 |
| 26 | 5TGM|1|5+ 5TGM|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA, Peptidyl-tRNA analog ACCA-Leu-Phe | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.5 | 3308 | 2017-01-18 |
| 27 | 4V7R|1|B1+ 4V7R|1|B3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast 80S ribosome. | X-ray diffraction | 4 | 3364 | 2014-07-09 |
| 28 | 4V7R|1|D1+ 4V7R|1|D3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast 80S ribosome. | X-ray diffraction | 4 | 3364 | 2014-07-09 |
| 29 | 5DAT|1|5+ 5DAT|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-ray diffraction | 3.15 | 3327 | 2016-08-31 |
| 30 | 5DGV|1|5+ 5DGV|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(8AN)*(Pro)*(Pro))-3') | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.1 | 3307 | 2016-12-14 |
| 31 | 5DAT|1|1+ 5DAT|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-ray diffraction | 3.15 | 3307 | 2016-08-31 |
| 32 | 5DGV|1|1+ 5DGV|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(8AN)*(Pro)*(Pro))-3') | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.1 | 3306 | 2016-12-14 |
| 33 | 5DGE|1|5+ 5DGE|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(NA))-3') | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-ray diffraction | 3.45 | 3308 | 2017-01-25 |
| 34 | 5TGA|1|5+ 5TGA|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.3 | 3308 | 2016-11-23 |
| 35 | 5DGF|1|5+ 5DGF|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.3 | 3327 | 2016-12-14 |
| 36 | 5TGA|1|1+ 5TGA|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.3 | 3307 | 2016-11-23 |
| 37 | 5DGF|1|1+ 5DGF|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.3 | 3307 | 2016-12-14 |
| 38 | 5DGE|1|1+ 5DGE|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(NA))-3') | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-ray diffraction | 3.45 | 3307 | 2017-01-25 |
| 39 | 5DC3|1|5+ 5DC3|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Complex of yeast 80S ribosome with non-modified eIF5A | X-ray diffraction | 3.25 | 3327 | 2016-06-01 |
| 40 | 5DC3|1|1+ 5DC3|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Complex of yeast 80S ribosome with non-modified eIF5A | X-ray diffraction | 3.25 | 3307 | 2016-06-01 |
| 41 | 6T4Q|1|C1+ 6T4Q|1|C3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination. | Electron microscopy | 2.6 | 3342 | 2019-12-25 |
| 42 | 6WOO|1|5+ 6WOO|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP | Electron microscopy | 2.9 | 3428 | 2020-09-23 |
| 43 | 6TB3|1|BQ+ 6TB3|1|BS | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex | Electron microscopy | 2.8 | 3381 | 2020-04-22 |
| 44 | 6SNT|1|1+ 6SNT|1|3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 5.8S rRNA, Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast 80S ribosome stalled on SDD1 mRNA. | Electron microscopy | 2.8 | 3342 | 2020-03-04 |
| 45 | 7AZY|1|E+ 7AZY|1|G | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Context-specific inhibition of eukaryotic translation by macrolide antibiotics | Electron microscopy | 2.877 | 3319 | 2021-05-19 |
| 46 | 4U4R|1|1+ 4U4R|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-ray diffraction | 2.8 | 3307 | 2014-10-22 |
| 47 | 4U4R|1|5+ 4U4R|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-ray diffraction | 2.8 | 3308 | 2014-10-22 |
| 48 | 4U3U|1|5+ 4U3U|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-ray diffraction | 2.9 | 3308 | 2014-10-22 |
| 49 | 4U3U|1|1+ 4U3U|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-ray diffraction | 2.9 | 3307 | 2014-10-22 |
| 50 | 5T62|1|A+ 5T62|1|C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S Ribosomal RNA, 5.8S Ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex | Electron microscopy | 3.1 | 3362 | 2017-02-08 |
| 51 | 4U3M|1|1+ 4U3M|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25s rRNA, 5.8s rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-ray diffraction | 3 | 3307 | 2014-10-22 |
| 52 | 6YLG|1|1+ 6YLG|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement) | Electron microscopy | 3 | 3193 | 2020-07-29 |
| 53 | 4U4Q|1|5+ 4U4Q|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 3308 | 2014-10-22 |
| 54 | 4U3M|1|5+ 4U3M|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25s rRNA, 5.8s rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-ray diffraction | 3 | 3308 | 2014-10-22 |
| 55 | 4U4U|1|1+ 4U4U|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 3307 | 2014-10-22 |
| 56 | 4U4Q|1|1+ 4U4Q|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 3307 | 2014-10-22 |
| 57 | 4U4U|1|5+ 4U4U|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 3308 | 2014-10-22 |
| 58 | 4U52|1|5+ 4U52|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-ray diffraction | 3 | 3308 | 2014-10-22 |
| 59 | 4U52|1|1+ 4U52|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-ray diffraction | 3 | 3307 | 2014-10-22 |
| 60 | 7RR5|1|C1+ 7RR5|1|C3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structure of ribosomal complex bound with Rbg1/Tma46 | Electron microscopy | 3.23 | 3379 | 2021-11-10 |
| 61 | 6Q8Y|1|BQ+ 6Q8Y|1|BS | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex | Electron microscopy | 3.1 | 3319 | 2019-03-13 |
| 62 | 7OHQ|1|1+ 7OHQ|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Nog1-TAP associated immature ribosomal particle population C from S. cerevisiae | Electron microscopy | 3.1 | 3211 | 2021-11-03 |
| 63 | 6YLH|1|1+ 6YLH|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Rix1-Rea1 pre-60S particle - full composite structure | Electron microscopy | 3.1 | 3193 | 2020-07-29 |
| 64 | 4U6F|1|1+ 4U6F|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 3307 | 2014-10-22 |
| 65 | 6T7T|1|C1+ 6T7T|1|C3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structure of yeast 80S ribosome stalled on poly(A) tract. | Electron microscopy | 3.1 | 3342 | 2019-12-25 |
| 66 | 4U6F|1|5+ 4U6F|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 3308 | 2014-10-22 |
| 67 | 6QIK|1|A+ 6QIK|1|y | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | Electron microscopy | 3.1 | 3302 | 2019-06-26 |
| 68 | 7B7D|1|LA+ 7B7D|1|LC | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs | Electron microscopy | 3.3 | 3381 | 2021-03-10 |
| 69 | 6XIR|1|1+ 6XIR|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 35S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress | Electron microscopy | 3.2 | 3271 | 2020-08-26 |
| 70 | 5M1J|1|14+ 5M1J|1|44 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Nonstop ribosomal complex bound with Dom34 and Hbs1 | Electron microscopy | 3.3 | 3453 | 2017-01-18 |
| 71 | 4U4N|1|5+ 4U4N|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 3308 | 2014-10-22 |
| 72 | 6TNU|1|BQ+ 6TNU|1|BS | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs. | Electron microscopy | 3.1 | 3342 | 2020-04-22 |
| 73 | 4U4Z|1|5+ 4U4Z|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 3308 | 2014-10-22 |
| 74 | 4U4N|1|1+ 4U4N|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 3307 | 2014-10-22 |
| 75 | 4U4Z|1|1+ 4U4Z|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 3307 | 2014-10-22 |
| 76 | 6RZZ|1|A+ 6RZZ|1|y | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | Electron microscopy | 3.2 | 3302 | 2019-06-26 |
| 77 | 6T7I|1|C1+ 6T7I|1|C3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination. | Electron microscopy | 3.2 | 3342 | 2019-12-25 |
| 78 | 7BT6|1|1+ 7BT6|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RDN25-1 rRNA, RDN5.8-1 rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1) | Electron microscopy | 3.12 | 3120 | 2020-10-28 |
| 79 | 7BTB|1|1+ 7BTB|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RDN25-1 rRNA, RDN5.8-1 rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2) | Electron microscopy | 3.22 | 3216 | 2020-10-28 |
| 80 | 4U3N|1|5+ 4U3N|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 3308 | 2014-10-22 |
| 81 | 4U4Y|1|5+ 4U4Y|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 3308 | 2014-10-22 |
| 82 | 3JCT|1|1+ 3JCT|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RDN25-1 rRNA, RDN58-1 rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-em structure of eukaryotic pre-60S ribosomal subunits | Electron microscopy | 3.08 | 3216 | 2016-06-01 |
| 83 | 4U3N|1|1+ 4U3N|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 3307 | 2014-10-22 |
| 84 | 4U55|1|5+ 4U55|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 3308 | 2014-10-22 |
| 85 | 4U4Y|1|1+ 4U4Y|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 3307 | 2014-10-22 |
| 86 | 6S47|1|AA+ 6S47|1|AC | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1 | Electron microscopy | 3.28 | 3307 | 2019-07-24 |
| 87 | 4U51|1|5+ 4U51|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 3308 | 2014-10-22 |
| 88 | 4U51|1|1+ 4U51|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 3307 | 2014-10-22 |
| 89 | 4U55|1|1+ 4U55|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 3307 | 2014-10-22 |
| 90 | 4U50|1|5+ 4U50|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 3308 | 2014-10-22 |
| 91 | 6R87|1|1+ 6R87|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1) | Electron microscopy | 3.4 | 3474 | 2019-06-26 |
| 92 | 5H4P|1|1+ 5H4P|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1 | Electron microscopy | 3.07 | 3249 | 2017-01-25 |
| 93 | 6M62|1|1+ 6M62|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RDN25-1 rRNA, RDN58-1 rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state. | Electron microscopy | 3.2 | 3130 | 2020-08-26 |
| 94 | 4U50|1|1+ 4U50|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 3307 | 2014-10-22 |
| 95 | 6Z6K|1|C1+ 6Z6K|1|C3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes | Electron microscopy | 3.4 | 3284 | 2020-07-29 |
| 96 | 6Z6J|1|C1+ 6Z6J|1|C3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition | Electron microscopy | 3.4 | 3284 | 2020-07-29 |
| 97 | 6R86|1|1+ 6R86|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast Vms1-60S ribosomal subunit complex (post-state) | Electron microscopy | 3.4 | 3418 | 2019-07-31 |
| 98 | 6RI5|1|A+ 6RI5|1|y | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S RNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | Electron microscopy | 3.3 | 3303 | 2019-06-26 |
| 99 | 7OF1|1|1+ 7OF1|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Nog1-TAP associated immature ribosomal particle population A from S. cerevisiae | Electron microscopy | 3.1 | 2945 | 2021-11-03 |
| 100 | 5JUP|1|B+ 5JUP|1|C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit) | Electron microscopy | 3.5 | 3467 | 2016-10-05 |
| 101 | 6HD7|1|1+ 6HD7|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 5.8S rRNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of the ribosome-NatA complex | Electron microscopy | 3.4 | 3493 | 2018-12-19 |
| 102 | 6QT0|1|A+ 6QT0|1|y | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | Electron microscopy | 3.4 | 3320 | 2019-06-26 |
| 103 | 4U53|1|1+ 4U53|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-ray diffraction | 3.3 | 3307 | 2014-10-22 |
| 104 | 6N8M|1|A+ 6N8M|1|C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 5.8S RNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit | Electron microscopy | 3.5 | 3361 | 2019-03-13 |
| 105 | 6N8O|1|A+ 6N8O|1|C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 5.8S rRNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit | Electron microscopy | 3.5 | 3359 | 2019-03-13 |
| 106 | 4U53|1|5+ 4U53|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-ray diffraction | 3.3 | 3308 | 2014-10-22 |
| 107 | 7OH3|1|1+ 7OH3|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Nog1-TAP associated immature ribosomal particle population B from S. cerevisiae | Electron microscopy | 3.4 | 3168 | 2021-11-03 |
| 108 | 6SV4|1|YQ+ 6SV4|1|YS | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | The cryo-EM structure of SDD1-stalled collided trisome. | Electron microscopy | 3.3 | 3284 | 2020-03-04 |
| 109 | 6SV4|1|BQ+ 6SV4|1|BS | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | The cryo-EM structure of SDD1-stalled collided trisome. | Electron microscopy | 3.3 | 3284 | 2020-03-04 |
| 110 | 6SV4|1|ZQ+ 6SV4|1|ZS | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | The cryo-EM structure of SDD1-stalled collided trisome. | Electron microscopy | 3.3 | 3284 | 2020-03-04 |
| 111 | 6R84|1|1+ 6R84|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1) | Electron microscopy | 3.6 | 3474 | 2019-06-26 |
| 112 | 6N8L|1|1+ 6N8L|1|3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 5.8S rRNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit | Electron microscopy | 3.6 | 3358 | 2019-03-13 |
| 113 | 6N8K|1|1+ 6N8K|1|3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 5.8S rRNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit | Electron microscopy | 3.6 | 3358 | 2019-03-13 |
| 114 | 5APO|1|5+ 5APO|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1 | Electron microscopy | 3.41 | 3270 | 2015-12-16 |
| 115 | 6QTZ|1|A+ 6QTZ|1|y | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | Electron microscopy | 3.5 | 3302 | 2019-06-26 |
| 116 | 6N8J|1|1+ 6N8J|1|3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 5.8S rRNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit | Electron microscopy | 3.5 | 3205 | 2019-03-13 |
| 117 | 6OIG|1|5+ 6OIG|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Subunit joining exposes nascent pre-40S rRNA for processing and quality control | Electron microscopy | 3.8 | 3401 | 2020-09-30 |
| 118 | 4U56|1|1+ 4U56|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-ray diffraction | 3.45 | 3307 | 2014-10-22 |
| 119 | 4U56|1|5+ 4U56|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-ray diffraction | 3.45 | 3308 | 2014-10-22 |
| 120 | 6N8N|1|A+ 6N8N|1|C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 5.8S rRNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit | Electron microscopy | 3.8 | 3361 | 2019-03-13 |
| 121 | 7NRC|1|LA+ 7NRC|1|LC | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA (3184-MER), 5.8S rRNA (158-MER) | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A | Electron microscopy | 3.9 | 3342 | 2021-05-05 |
| 122 | 5MC6|1|BQ+ 5MC6|1|BS | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae | Electron microscopy | 3.8 | 3323 | 2017-01-18 |
| 123 | 6GQB|1|1+ 6GQB|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 5.8S ribosomal RNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin) | Electron microscopy | 3.9 | 3381 | 2018-07-11 |
| 124 | 5JUU|1|B+ 5JUU|1|C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit) | Electron microscopy | 4 | 3465 | 2016-10-05 |
| 125 | 6T83|1|1b+ 6T83|1|3b | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structure of yeast disome (di-ribosome) stalled on poly(A) tract. | Electron microscopy | 4 | 3342 | 2019-12-25 |
| 126 | 5JUT|1|B+ 5JUT|1|C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit) | Electron microscopy | 4 | 3467 | 2016-10-05 |
| 127 | 5JUO|1|B+ 5JUO|1|C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit) | Electron microscopy | 4 | 3467 | 2016-10-05 |
| 128 | 6T83|1|Aa+ 6T83|1|Ca | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structure of yeast disome (di-ribosome) stalled on poly(A) tract. | Electron microscopy | 4 | 3284 | 2019-12-25 |
| 129 | 6S05|1|A+ 6S05|1|y | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | Electron microscopy | 3.9 | 3302 | 2019-06-26 |
| 130 | 6GQV|1|1+ 6GQV|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP) | Electron microscopy | 4 | 3381 | 2018-07-11 |
| 131 | 6FT6|1|1+ 6FT6|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 7S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors | Electron microscopy | 3.9 | 3220 | 2018-03-28 |
| 132 | 6ELZ|1|1+ 6ELZ|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmes | Electron microscopy | 3.3 | 2615 | 2017-12-27 |
| 133 | 5APN|1|5+ 5APN|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1 | Electron microscopy | 3.91 | 3270 | 2015-12-16 |
| 134 | 6YLY|1|1+ 6YLY|1|3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | pre-60S State NE2 (TAP-Flag-Nop53) | Electron microscopy | 3.8 | 2834 | 2020-07-29 |
| 135 | 4U4O|1|5+ 4U4O|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Geneticin bound to the yeast 80S ribosome | X-ray diffraction | 3.6 | 3308 | 2014-10-22 |
| 136 | 4U4O|1|1+ 4U4O|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Geneticin bound to the yeast 80S ribosome | X-ray diffraction | 3.6 | 3307 | 2014-10-22 |
| 137 | 6YLX|1|1+ 6YLX|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | pre-60S State NE1 (TAP-Flag-Nop53) | Electron microscopy | 3.9 | 2692 | 2020-07-29 |
| 138 | 5GAK|1|1+ 5GAK|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A | Electron microscopy | 3.88 | 3323 | 2016-02-24 |
| 139 | 7OHX|1|1+ 7OHX|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population A | Electron microscopy | 3.3 | 1709 | 2021-11-03 |
| 140 | 7OHV|1|1+ 7OHV|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population C | Electron microscopy | 3.9 | 2296 | 2021-11-03 |
| 141 | 6EM1|1|1+ 6EM1|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes | Electron microscopy | 3.6 | 1943 | 2017-12-27 |
| 142 | 6EM3|1|1 | Large subunit ribosomal RNA | 25S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 | State A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes | Electron microscopy | 3.2 | 1250 | 2017-12-27 |
| 143 | 7OHU|1|1+ 7OHU|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population B | Electron microscopy | 3.7 | 1840 | 2021-11-03 |
| 144 | 7OHY|1|1+ 7OHY|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population B | Electron microscopy | 3.9 | 1837 | 2021-11-03 |
| 145 | 7OHW|1|1+ 7OHW|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population B | Electron microscopy | 3.5 | 1788 | 2021-11-03 |
| 146 | 7OHP|1|1+ 7OHP|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population A | Electron microscopy | 3.9 | 1716 | 2021-11-03 |
| 147 | 6C0F|1|1+ 6C0F|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 5.8S rRNA, Saccharomyces cerevisiae S288c 35S pre-ribosomal RNA miscRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast nucleolar pre-60S ribosomal subunit (state 2) | Electron microscopy | 3.7 | 1515 | 2018-03-14 |
| 148 | 5Z3G|1|A+ 5Z3G|1|B | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP) | Electron microscopy | 3.65 | 1657 | 2018-04-11 |
Release history
| Release | 3.208 | 3.209 | 3.210 | 3.211 | 3.212 | 3.213 | 3.214 | 3.215 | 3.216 | 3.217 | 3.218 | 3.219 | 3.220 | 3.221 | 3.222 | 3.223 | 3.224 | 3.225 | 3.226 | 3.227 | 3.228 | 3.229 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2021-12-08 | 2021-12-15 | 2021-12-22 | 2021-12-29 | 2022-01-05 | 2022-01-12 | 2022-01-19 | 2022-01-26 | 2022-02-02 | 2022-02-09 | 2022-02-16 | 2022-02-23 | 2022-03-02 | 2022-03-09 | 2022-03-16 | 2022-03-23 | 2022-03-30 | 2022-04-06 | 2022-04-13 | 2022-04-20 | 2022-04-27 | 2022-05-04 |
Parents
Children
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 6EM3|1|1 | State A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes | ELECTRON MICROSCOPY | 3.2 | 1250 | |
| 2 | 6OIG|1|5+ 6OIG|1|8 | Subunit joining exposes nascent pre-40S rRNA for processing and quality control | ELECTRON MICROSCOPY | 3.8 | 3401 | |
| 3 | 6XIR|1|1+ 6XIR|1|4 | Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress | ELECTRON MICROSCOPY | 3.2 | 3271 | |
| 4 | 6WOO|1|5+ 6WOO|1|8 | CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP | ELECTRON MICROSCOPY | 2.9 | 3428 | |
| 5 | 5JUT|1|B+ 5JUT|1|C | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit) | ELECTRON MICROSCOPY | 4 | 3467 | |
| 6 | 5JUU|1|B+ 5JUU|1|C | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit) | ELECTRON MICROSCOPY | 4 | 3465 | |
| 7 | 5JUP|1|B+ 5JUP|1|C | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit) | ELECTRON MICROSCOPY | 3.5 | 3467 | |
| 8 | 5JUO|1|B+ 5JUO|1|C | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit) | ELECTRON MICROSCOPY | 4 | 3467 | |
| 9 | 6R86|1|1+ 6R86|1|4 | Yeast Vms1-60S ribosomal subunit complex (post-state) | ELECTRON MICROSCOPY | 3.4 | 3418 | |
| 10 | 6Z6K|1|C1+ 6Z6K|1|C3 | Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes | ELECTRON MICROSCOPY | 3.4 | 3284 | |
| 11 | 6Z6J|1|C1+ 6Z6J|1|C3 | Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition | ELECTRON MICROSCOPY | 3.4 | 3284 | |
| 12 | 6R87|1|1+ 6R87|1|4 | Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1) | ELECTRON MICROSCOPY | 3.4 | 3474 | |
| 13 | 6R84|1|1+ 6R84|1|4 | Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1) | ELECTRON MICROSCOPY | 3.6 | 3474 | |
| 14 | 5APN|1|5+ 5APN|1|8 | Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1 | ELECTRON MICROSCOPY | 3.91 | 3270 | |
| 15 | 5APO|1|5+ 5APO|1|8 | Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1 | ELECTRON MICROSCOPY | 3.41 | 3270 | |
| 16 | 6QT0|1|A+ 6QT0|1|y | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | ELECTRON MICROSCOPY | 3.4 | 3320 | |
| 17 | 5NDW|1|5+ 5NDW|1|8 | Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.7 | 3238 | |
| 18 | 6SV4|1|ZQ+ 6SV4|1|ZS | The cryo-EM structure of SDD1-stalled collided trisome. | ELECTRON MICROSCOPY | 3.3 | 3284 | |
| 19 | 6SV4|1|YQ+ 6SV4|1|YS | The cryo-EM structure of SDD1-stalled collided trisome. | ELECTRON MICROSCOPY | 3.3 | 3284 | |
| 20 | 6SV4|1|BQ+ 6SV4|1|BS | The cryo-EM structure of SDD1-stalled collided trisome. | ELECTRON MICROSCOPY | 3.3 | 3284 | |
| 21 | 6T83|1|Aa+ 6T83|1|Ca | Structure of yeast disome (di-ribosome) stalled on poly(A) tract. | ELECTRON MICROSCOPY | 4 | 3284 | |
| 22 | 5NDG|1|5+ 5NDG|1|8 | Crystal structure of geneticin (G418) bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.7 | 3284 | |
| 23 | 5NDV|1|5+ 5NDV|1|8 | Crystal structure of Paromomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 3245 | |
| 24 | 4U4O|1|5+ 4U4O|1|8 | Crystal structure of Geneticin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.6 | 3308 | |
| 25 | 4U56|1|5+ 4U56|1|8 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.45 | 3308 | |
| 26 | 4U3N|1|5+ 4U3N|1|8 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 3308 | |
| 27 | 4V88|1|A5+ 4V88|1|A8 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 3308 | |
| 28 | 4U4R|1|5+ 4U4R|1|8 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 3308 | |
| 29 | 4U3U|1|5+ 4U3U|1|8 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 3308 | |
| 30 | 4U4Y|1|5+ 4U4Y|1|8 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 3308 | |
| 31 | 4U3M|1|5+ 4U3M|1|8 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3308 | |
| 32 | 4U6F|1|5+ 4U6F|1|8 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 3308 | |
| 33 | 4U4Q|1|5+ 4U4Q|1|8 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3308 | |
| 34 | 4U4U|1|5+ 4U4U|1|8 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3308 | |
| 35 | 4U51|1|5+ 4U51|1|8 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 3308 | |
| 36 | 4U52|1|5+ 4U52|1|8 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3308 | |
| 37 | 4U50|1|5+ 4U50|1|8 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 3308 | |
| 38 | 4U53|1|5+ 4U53|1|8 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 3308 | |
| 39 | 5I4L|1|5+ 5I4L|1|8 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 3308 | |
| 40 | 4U4N|1|5+ 4U4N|1|8 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 3308 | |
| 41 | 4U55|1|5+ 4U55|1|8 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 3308 | |
| 42 | 4U4Z|1|5+ 4U4Z|1|8 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 3308 | |
| 43 | 5LYB|1|5+ 5LYB|1|8 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-RAY DIFFRACTION | 3.25 | 3308 | |
| 44 | 5TGA|1|5+ 5TGA|1|8 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.3 | 3308 | |
| 45 | 5TGM|1|5+ 5TGM|1|8 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.5 | 3308 | |
| 46 | 5DGV|1|5+ 5DGV|1|8 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.1 | 3307 | |
| 47 | 5DGE|1|5+ 5DGE|1|8 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-RAY DIFFRACTION | 3.45 | 3308 | |
| 48 | 5DC3|1|5+ 5DC3|1|8 | Complex of yeast 80S ribosome with non-modified eIF5A | X-RAY DIFFRACTION | 3.25 | 3327 | |
| 49 | 5DAT|1|5+ 5DAT|1|8 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-RAY DIFFRACTION | 3.15 | 3327 | |
| 50 | 5DGF|1|5+ 5DGF|1|8 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.3 | 3327 | |
| 51 | 5OBM|1|5+ 5OBM|1|8 | Crystal structure of Gentamicin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.4 | 3292 | |
| 52 | 5TBW|1|AR+ 5TBW|1|AT | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3307 | |
| 53 | 6HHQ|1|AR+ 6HHQ|1|AT | Crystal structure of compound C45 bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 3305 | |
| 54 | 5ON6|1|AR+ 5ON6|1|AT | Crystal structure of haemanthamine bound to the 80S ribosome | X-RAY DIFFRACTION | 3.1 | 3307 | |
| 55 | 5MEI|1|AR+ 5MEI|1|AT | Crystal structure of Agelastatin A bound to the 80S ribosome | X-RAY DIFFRACTION | 3.5 | 3307 | |
| 56 | 5OBM|1|1+ 5OBM|1|4 | Crystal structure of Gentamicin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.4 | 3256 | |
| 57 | 4U4O|1|1+ 4U4O|1|4 | Crystal structure of Geneticin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.6 | 3307 | |
| 58 | 5DGF|1|1+ 5DGF|1|4 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.3 | 3307 | |
| 59 | 5DAT|1|1+ 5DAT|1|4 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-RAY DIFFRACTION | 3.15 | 3307 | |
| 60 | 6HHQ|1|1+ 6HHQ|1|4 | Crystal structure of compound C45 bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 3307 | |
| 61 | 5MEI|1|1+ 5MEI|1|4 | Crystal structure of Agelastatin A bound to the 80S ribosome | X-RAY DIFFRACTION | 3.5 | 3307 | |
| 62 | 5ON6|1|1+ 5ON6|1|4 | Crystal structure of haemanthamine bound to the 80S ribosome | X-RAY DIFFRACTION | 3.1 | 3307 | |
| 63 | 4U52|1|1+ 4U52|1|4 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3307 | |
| 64 | 4U50|1|1+ 4U50|1|4 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 3307 | |
| 65 | 4U53|1|1+ 4U53|1|4 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 3307 | |
| 66 | 4U55|1|1+ 4U55|1|4 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 3307 | |
| 67 | 4U4Z|1|1+ 4U4Z|1|4 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 3307 | |
| 68 | 4U3N|1|1+ 4U3N|1|4 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 3307 | |
| 69 | 4V88|1|A1+ 4V88|1|A4 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 3307 | |
| 70 | 4U4R|1|1+ 4U4R|1|4 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 3307 | |
| 71 | 4U3U|1|1+ 4U3U|1|4 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 3307 | |
| 72 | 4U3M|1|1+ 4U3M|1|4 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3307 | |
| 73 | 4U6F|1|1+ 4U6F|1|4 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 3307 | |
| 74 | 4U51|1|1+ 4U51|1|4 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 3307 | |
| 75 | 4U4Q|1|1+ 4U4Q|1|4 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3307 | |
| 76 | 4U4U|1|1+ 4U4U|1|4 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3307 | |
| 77 | 4U4N|1|1+ 4U4N|1|4 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 3307 | |
| 78 | 5I4L|1|1+ 5I4L|1|4 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 3307 | |
| 79 | 5TGA|1|1+ 5TGA|1|4 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.3 | 3307 | |
| 80 | 5LYB|1|1+ 5LYB|1|4 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-RAY DIFFRACTION | 3.25 | 3307 | |
| 81 | 4U56|1|1+ 4U56|1|4 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.45 | 3307 | |
| 82 | 4U4Y|1|1+ 4U4Y|1|4 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 3307 | |
| 83 | 5TBW|1|1+ 5TBW|1|4 | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3307 | |
| 84 | 5DC3|1|1+ 5DC3|1|4 | Complex of yeast 80S ribosome with non-modified eIF5A | X-RAY DIFFRACTION | 3.25 | 3307 | |
| 85 | 5DGE|1|1+ 5DGE|1|4 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-RAY DIFFRACTION | 3.45 | 3307 | |
| 86 | 5DGV|1|1+ 5DGV|1|4 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.1 | 3306 | |
| 87 | 5TGM|1|1+ 5TGM|1|4 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.5 | 3307 | |
| 88 | 6S47|1|AA+ 6S47|1|AC | Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1 | ELECTRON MICROSCOPY | 3.28 | 3307 | |
| 89 | 5NDG|1|1+ 5NDG|1|4 | Crystal structure of geneticin (G418) bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.7 | 3236 | |
| 90 | 5NDW|1|1+ 5NDW|1|4 | Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.7 | 3248 | |
| 91 | 5M1J|1|14+ 5M1J|1|44 | Nonstop ribosomal complex bound with Dom34 and Hbs1 | ELECTRON MICROSCOPY | 3.3 | 3453 | |
| 92 | 5H4P|1|1+ 5H4P|1|4 | Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1 | ELECTRON MICROSCOPY | 3.07 | 3249 | |
| 93 | 7B7D|1|LA+ 7B7D|1|LC | Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs | ELECTRON MICROSCOPY | 3.3 | 3381 | |
| 94 | 5NDV|1|1+ 5NDV|1|4 | Crystal structure of Paromomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 3235 | |
| 95 | 6T83|1|1b+ 6T83|1|3b | Structure of yeast disome (di-ribosome) stalled on poly(A) tract. | ELECTRON MICROSCOPY | 4 | 3342 | |
| 96 | 6TB3|1|BQ+ 6TB3|1|BS | yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex | ELECTRON MICROSCOPY | 2.8 | 3381 | |
| 97 | 6SNT|1|1+ 6SNT|1|3 | Yeast 80S ribosome stalled on SDD1 mRNA. | ELECTRON MICROSCOPY | 2.8 | 3342 | |
| 98 | 6T4Q|1|C1+ 6T4Q|1|C3 | Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination. | ELECTRON MICROSCOPY | 2.6 | 3342 | |
| 99 | 6T7T|1|C1+ 6T7T|1|C3 | Structure of yeast 80S ribosome stalled on poly(A) tract. | ELECTRON MICROSCOPY | 3.1 | 3342 | |
| 100 | 6T7I|1|C1+ 6T7I|1|C3 | Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination. | ELECTRON MICROSCOPY | 3.2 | 3342 | |
| 101 | 6Q8Y|1|BQ+ 6Q8Y|1|BS | Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex | ELECTRON MICROSCOPY | 3.1 | 3319 | |
| 102 | 7AZY|1|E+ 7AZY|1|G | Context-specific inhibition of eukaryotic translation by macrolide antibiotics | ELECTRON MICROSCOPY | 2.877 | 3319 | |
| 103 | 5MC6|1|BQ+ 5MC6|1|BS | Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae | ELECTRON MICROSCOPY | 3.8 | 3323 | |
| 104 | 7NRC|1|LA+ 7NRC|1|LC | Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A | ELECTRON MICROSCOPY | 3.9 | 3342 | |
| 105 | 6TNU|1|BQ+ 6TNU|1|BS | Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs. | ELECTRON MICROSCOPY | 3.1 | 3342 | |
| 106 | 5GAK|1|1+ 5GAK|1|4 | Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A | ELECTRON MICROSCOPY | 3.88 | 3323 | |
| 107 | 6HD7|1|1+ 6HD7|1|4 | Cryo-EM structure of the ribosome-NatA complex | ELECTRON MICROSCOPY | 3.4 | 3493 | |
| 108 | 7RR5|1|C1+ 7RR5|1|C3 | Structure of ribosomal complex bound with Rbg1/Tma46 | ELECTRON MICROSCOPY | 3.23 | 3379 | |
| 109 | 6GQV|1|1+ 6GQV|1|4 | Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP) | ELECTRON MICROSCOPY | 4 | 3381 | |
| 110 | 6GQB|1|1+ 6GQB|1|4 | Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin) | ELECTRON MICROSCOPY | 3.9 | 3381 | |
| 111 | 7OSA|1|25S+ 7OSA|1|58S | Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-RAY DIFFRACTION | 3 | 3338 | |
| 112 | 7OSM|1|25S+ 7OSM|1|58S | Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-RAY DIFFRACTION | 3 | 3320 | |
| 113 | 6RI5|1|A+ 6RI5|1|y | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | ELECTRON MICROSCOPY | 3.3 | 3303 | |
| 114 | 6QTZ|1|A+ 6QTZ|1|y | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | ELECTRON MICROSCOPY | 3.5 | 3302 | |
| 115 | 6N8O|1|A+ 6N8O|1|C | Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit | ELECTRON MICROSCOPY | 3.5 | 3359 | |
| 116 | 5T62|1|A+ 5T62|1|C | Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex | ELECTRON MICROSCOPY | 3.1 | 3362 | |
| 117 | 4V7R|1|B1+ 4V7R|1|B3 | Yeast 80S ribosome. | X-RAY DIFFRACTION | 4 | 3364 | |
| 118 | 4V7R|1|D1+ 4V7R|1|D3 | Yeast 80S ribosome. | X-RAY DIFFRACTION | 4 | 3364 | |
| 119 | 6S05|1|A+ 6S05|1|y | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | ELECTRON MICROSCOPY | 3.9 | 3302 | |
| 120 | 6RZZ|1|A+ 6RZZ|1|y | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | ELECTRON MICROSCOPY | 3.2 | 3302 | |
| 121 | 6QIK|1|A+ 6QIK|1|y | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | ELECTRON MICROSCOPY | 3.1 | 3302 | |
| 122 | 6N8N|1|A+ 6N8N|1|C | Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit | ELECTRON MICROSCOPY | 3.8 | 3361 | |
| 123 | 6N8M|1|A+ 6N8M|1|C | Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit | ELECTRON MICROSCOPY | 3.5 | 3361 | |
| 124 | 6N8L|1|1+ 6N8L|1|3 | Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit | ELECTRON MICROSCOPY | 3.6 | 3358 | |
| 125 | 6N8K|1|1+ 6N8K|1|3 | Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit | ELECTRON MICROSCOPY | 3.6 | 3358 | |
| 126 | 7OF1|1|1+ 7OF1|1|2 | Nog1-TAP associated immature ribosomal particle population A from S. cerevisiae | ELECTRON MICROSCOPY | 3.1 | 2945 | |
| 127 | 6N8J|1|1+ 6N8J|1|3 | Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit | ELECTRON MICROSCOPY | 3.5 | 3205 | |
| 128 | 6YLY|1|1+ 6YLY|1|3 | pre-60S State NE2 (TAP-Flag-Nop53) | ELECTRON MICROSCOPY | 3.8 | 2834 | |
| 129 | 6YLH|1|1+ 6YLH|1|2 | Rix1-Rea1 pre-60S particle - full composite structure | ELECTRON MICROSCOPY | 3.1 | 3193 | |
| 130 | 6YLG|1|1+ 6YLG|1|2 | Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement) | ELECTRON MICROSCOPY | 3 | 3193 | |
| 131 | 6YLX|1|1+ 6YLX|1|2 | pre-60S State NE1 (TAP-Flag-Nop53) | ELECTRON MICROSCOPY | 3.9 | 2692 | |
| 132 | 7BTB|1|1+ 7BTB|1|2 | Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2) | ELECTRON MICROSCOPY | 3.22 | 3216 | |
| 133 | 6FT6|1|1+ 6FT6|1|2 | Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors | ELECTRON MICROSCOPY | 3.9 | 3220 | |
| 134 | 3JCT|1|1+ 3JCT|1|2 | Cryo-em structure of eukaryotic pre-60S ribosomal subunits | ELECTRON MICROSCOPY | 3.08 | 3216 | |
| 135 | 7OH3|1|1+ 7OH3|1|2 | Nog1-TAP associated immature ribosomal particle population B from S. cerevisiae | ELECTRON MICROSCOPY | 3.4 | 3168 | |
| 136 | 7OHQ|1|1+ 7OHQ|1|2 | Nog1-TAP associated immature ribosomal particle population C from S. cerevisiae | ELECTRON MICROSCOPY | 3.1 | 3211 | |
| 137 | 6M62|1|1+ 6M62|1|2 | Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state. | ELECTRON MICROSCOPY | 3.2 | 3130 | |
| 138 | 7BT6|1|1+ 7BT6|1|2 | Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1) | ELECTRON MICROSCOPY | 3.12 | 3120 | |
| 139 | 5Z3G|1|A+ 5Z3G|1|B | Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP) | ELECTRON MICROSCOPY | 3.65 | 1657 | |
| 140 | 7OHX|1|1+ 7OHX|1|2 | Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population A | ELECTRON MICROSCOPY | 3.3 | 1709 | |
| 141 | 7OHW|1|1+ 7OHW|1|2 | Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population B | ELECTRON MICROSCOPY | 3.5 | 1788 | |
| 142 | 6EM1|1|1+ 6EM1|1|2 | State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes | ELECTRON MICROSCOPY | 3.6 | 1943 | |
| 143 | 6ELZ|1|1+ 6ELZ|1|2 | State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmes | ELECTRON MICROSCOPY | 3.3 | 2615 | |
| 144 | 7OHV|1|1+ 7OHV|1|2 | Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population C | ELECTRON MICROSCOPY | 3.9 | 2296 | |
| 145 | 7OHY|1|1+ 7OHY|1|2 | Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population B | ELECTRON MICROSCOPY | 3.9 | 1837 | |
| 146 | 7OHU|1|1+ 7OHU|1|2 | Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population B | ELECTRON MICROSCOPY | 3.7 | 1840 | |
| 147 | 7OHP|1|1+ 7OHP|1|2 | Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population A | ELECTRON MICROSCOPY | 3.9 | 1716 | |
| 148 | 6C0F|1|1+ 6C0F|1|2 | Yeast nucleolar pre-60S ribosomal subunit (state 2) | ELECTRON MICROSCOPY | 3.7 | 1515 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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